RNA id: XM_043224374.1


Basic Information

Item Value
RNA id XM_043224374.1
length 9241
RNA type mRNA
GC content 0.48
exon number 20
gene id casz1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8699825 ~ 8777258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgcgtgtgtacagGAGCAGAACCGTAGaccgagagagggagagagagggagagagagagagagagagagagagagagagatagagagagagaaaggcaggAGGAGCAGTCGAGGAAGGGGCCGGCTCTGTATTCTCTCACCTACCCCCCGTCAAACCACAGGAAGGAGGGGCCAAGCCAAGCTGCCAATCAACCTCACTCGTGGCAGCCGGCATTATCTCTGCTACAAACTATTGACAGATTACATGTCAAGGAGTTTAGTACATGATTGAGAGCAAAAAAGGCGTTTATTGTCAACTACTTTTAGCTTTCCTTTTCTCACAGACCAGCTTACATCTGATGATTTTCAAACAGAgttcagtaatattatgaaagtTACATGCTTGACAGGATTTAACTTCGACTACCCTGAATATGatttcagGTTGACTGAACGTGAAATAATCTGAGATTACAGCACAGAATGATATCATTCACATCATCAGTTGTGTAATTATCATGCAAGAACGAGTGCAAAATGAAGGGATGCGAATGGACACAGTCATCCACGACGGCTGAGAGGAGTTTATGCACTGAAAAGACCTCAGGAAAATCCACGATGGCCGCCAAAAGGAAAGGTGGCCTAAAACTGAATGCGATCTGTGCCAAGCTTAGCAAGCAGGTGGTGTATGACGGCAGTTCCCAGAATGCCGAGGGAGACTCAGATTTAGTGGACAACAGCGAGCGGGGCAGCTTGCACTATGATGAGGGCGACAGGCCTGAAAGCGACTTCCCAGAGGGCCTGACCCTAGGCCAGAGCCTTGAGGAGGACCAGAAACGGCGCGAGGCCATTGAGAAGTGGGTGAACGGCGAGTACGCTGACGATCCACAGTCCTTAGATAGGGGCGAGCTCAGGGGACTCAAACCCAACAATGGGGACGATTGTCCCCCTGAAGGCGTCTATATGGTACAGCCCAAAGGCTGCAGCGATGAAGAAGACAATGCAGAAGAAGCTGACACCATGCCCGGCTCCCATGAGGGCAGTTTTCATGAGGACAGGGACTCGGAGGGCAGCCCACACAAGGACGACAATTACCAGCCCACCACTGAAGCCCCCCCTCGCCAAGTCTCCTTCTCCTCGCAAGGAGAGGCCTCCGCACTACGTGATTACGCCGCCAACACCATGAATGAGTTCTTACACATGTTCGGCTATGATGACCAGCAGGGTCGAGATGAGCTGTCCAAGAAGATCAGCTTTGAAAAACTGAAAGCAGCTACCTCAGATCCCTCATCCCTGAGCAGCGAGGAGGCCACCCGTCGAGCTCGCTTCTCCAAGTATGAGGAGTACATCCGCAAGCTAAAGGCCGGGGAGACCCTGCCCTGGCCTATACACACCAAGCCCGAAGAGCTCAATTCCAAAATGGAGAAGAGTGCTGCCCTCATCCAGCCGGCCCTCGCAGGGTCAGAGGGTCAGATATTTCCACCCGGAATGGACCACAAACAAAGCTCACTCAACCCACCTTCAACCAACCCGTCACACATCCAGAACCTGGCATCCCGCGCCTCCAAGTACGATTACTTCATCCAGAAGCTAAAGATGGGCGAGAGTCTTAGACAACAGAATGGCAATTCCTACAAGCGGCCCTCCAAGTACGACTTGGAGAATGTCAAGTTCCTGCACCTCTTTAAACCCGGAGAGGGCAACCCTGACATGGGCGGTGCCATTGCATTTAAGACCGGCAAGGTCGGCAGGCCGTCAAAGTACGATATACGGAACATCCAGAAGCTCATGCCTGGGAAGGTTGATCCTCCAATGATGCCGAGTGTTCTCCCAGCTACGGCAGGAACCCCAGGAACACCAGTCATCAATACAGCTGCTCCCGCCGGTGTCGTGGGACCTCCCGGGTTGCCCGTAGACCAGGCGGGCCACCTCGGCTTTAACACTGACTACATGAAGTCCAGCTTCTCCAAGACTGACTCCATCACTACTGGAACCGTCTCCTCAGTCAAGAACGGCCTTCCTCCCGAGAAACCTGCCACAGAGGACGTCAACGTGTACCAGAAATATATCGCAAGGTTCTCTGGGAGCCAACACTGTGGCCATGTGCACTGTGCATACCAGTACAGAGAGCATTATCACTGCATGGACCCTGAATGTAACTATCAGAGATTCACCAGTAAGCAGGATGTGATAAGGCATTATAACATGCATAAGAAGCGGGACAACTCCCTGCAGCATGGATTCATGCGCTTCAGCCCTTTGGATGACTGCAGTGTATACTACCATGGCTGCCATCTCAACGGCAAGAGTACCCACTACCACTGCATGCAGGTGGGCTGCAACAAGGTGTACACAAGCACTTCTGATGTCATGACTCATGAGAACTTCCATAAGAAAAATGCACAGCTGATCAACGATGGCTTCCAAAGGTTCCGGGCCACTGAGGATTGTGGGACAGTTGGGTGCCAGTTCTATGGGCAGAAGACCACCCACTTCCACTGCAGACGCCCGGGCTGTACCTTCACCTTTAAGAACAAGTGTGACATCGAGAAGCACAAGAGCTATCACATCAAAGATGACGCTTACGCCAAGGACGGCTTCAAGAAGTTTTACAAATATGAGGAATGCAAATACGAAGGCTGCGTCTACAGCAAGGCCACCAACCATTTTCACTGCATACGCCAAGGCTGCGGCTTCACCTTTACCTCCACCAGCCAGATGACCTCACACAAGCGCAAGCATGAGCGCCGCCACATTCGCTCCTCAGGCGTACTGGGCCTCACTTCCTCCTTTCTGTTGCCCAAAGAGGAGCTGGAAGAGTCTAGCAACGATGACCTCATGGACTACTCAGCCATTAGCAGCAAGAACTCCAGCTTGAGTGCTTCTCCAACAACCCAGCAGTCCTCCACCGTACCACACATGCTGCCCACTCCTACCACCACCATGTCCTCCAGCCACAGCGTCAAACCCACTGCCGCTCTGCCTCCAGCCAGCCGTATTTCAACCCTGCTGTCCCAGGCTCTGCCCAGCAATGTGCCCATGGCCCTAGCACTGTCCAACAGCGCACTGGCAGGTGCTTCCAACCCCTTCTTCCCCCTCATTCCCAGAATGCCCATGTCGCTCACGCCTGCTACCGCCGGTCTGATATCTGCCGCCAGCTCTGGAGGTCACTCCATGCCCAGCGATTCTCTACCCCAGACCTCCACCCCGACTGGGGACCTGGCCGCTGCTACTGTAGCATCCACACCAACTTCTTTTGCTGCATCATCTATAATGGAGAAGATGTCGGCCAGCAAGGGTCTAATATCGCCCATGATGGCCCGACTGGCAGCCGCTGCCCTGAAACCCTCCAGTAACCCAGATGCAGGGATGGGGCAGCCGGCTCAGACAGGCCGGTTTAATCCGGTCGAGGTGAAGCAGGAGCCGGTGGACAGCGCCTCCGCGGCCTCCCAGGAGTCCGTCCAGGAGCACAGCCTGGACCTGAGCAAGAAAGACCACAGCGCTGAATCAAACGGACACCCTGCGTCGGGAAATACATCTCTTTTATCCTCACTTATGAATAAGaTGAATCCTGGTTTCTTCAGTGCTTTGGATCTGAAGTCAGAGCTGGAGGGAGCTCAGGCGGCAGACGGCTCAGATGCAGCTCAGTATCTCAGTAGGGTACTGAAGAGGTCAGACCCAGAGAAACACAACGAGCAGTGGAGAACCTACCTACGCAGgTATGACAATGATGATTTCTGCGAATCCCAATGTGATTTCTTGCACAAGATACATTTTCATTGCCTGGTGGAAGATTGTGGGGCGCTTTTCAGCACGGTGGACGGAGCCATCAAACACGCCAACTTCCACTTCAGAGCCAACCTGAAGGTTAAATCAGAGCCCCCTTTCAACGAGAGCAAGGAATCCAATGATAGCGCCCCTAATCAAATGGCTGCCCCCATTTCCATGGCCAAGACGCCTCCCATGGAGGTGCCCAGCCTGGCTGTGTCAGGGGGCTACAGCTCTTCCCCTTCTCTCCAAGCCTGGAAGCAGCTGGCCGGATCGATTCCCCAACTTCCCGCCTCCATGCCCAGTATGCCAGCCACTTCCCCTCTGGCCACCACCTCGCTGGAAAACGCCAAGCCTCAGGTCAAGCCTGGCTTCCTGCAGTTTCAGGAGAATGATCCTTGTCTGGCCACAGACTGCAAATACTCGAATAAGTTCCACTTCCACTGTCTGTTTGGAAATTGCAAATATGTGTGCAAGACATCCGGGAAGGCTGAATCACATTGCCTGGACCACATTAACCCCAACAACAACCTGGTGAATGTGCGAGACCAGTTCTCCTACTATTCTCTGCAGTGTCTTTGTCCTAACCAGCACTGTGAGTTTCGCATGAGGGGCCATTATCATTGTCTGAGACCCGGCTGTTTCTTCGTCACCAACATCACCACCAAACTTCCCTGGCACATCAAGAAGCACGAGAAAGCTGAAAGACGTGCCGCTAATGGCTTTAAATACTTCACCAAGAGAGAAGAATGTGGCAGACTAGGGTGCAAATACAACCAAGTTAACAGCCACTTCCATTGTATCCGTGAGGGCTGTCAGTTCTCCTTCCTGCTTAAGCACCAGATGACCTCCCATGCCCGCAAACACATGAGGAGGATGCTGGGTAAAAACTTTGACAGAGTTCCTTCCCAGATGGTCTCTCATGGCAACCGACCTGATGACATGCAGCACATGGCCAGTCTAGCTTCGTCCGGTATGGTAGGCAGCCACCCTAATCTGACCCCCAACTTCTCCAGCATGATGGAGGATAATGATGACTACATGGACTACACCGGTGGAGGAAGCCCACTGGGTCTCTCCTCAGAGTCCTCCAACCAAGACCGCAGTTGCACCAGCACCCCCGTGGGCAACGATAGTTCGCCAGCAGGACCGGGCTGTCAGGTCCCTGCCACCACTACCTCTGCTGACTCTCCTCCTTCTTCTCAATCtgcaccacctcctcctccacctcctcttcCACCTCCTCATCAGCCTGTGCTCCAGAGTCagcctccatctctctcttcgGCTCTTCTCCGGCCGCCACTCCCCTCGCTCCCATATCTCCTTTCCCCATCCTGTCTGTCATACTCTCTGCTCAGCGCCTCTCTCGGAGCCACTAGGAGTGTTGTCATGCCAACCAACACACCAGCTTTCAGCCCCATCATTCCTACTTCGTCTTCGGTTAAAAATGACGTCCCTATAGTGCAGGACGCTGCAGGTAACACCATCTCTATTCCAACGGCAACTGGTGCGAAGAAACGCTTCTGGATCATCGAGGACATGTCCCCCTTCGGCAAGCGCCGCAAGACTGCTTCGTCTCGCAAGATGCTGGATGAAGGCATGATGCTAGAAGGGTTCCGCCGCTATGACCTCTATGAGGACTGCAAGGATACAGCCTGTCAGTTCTCCCTGAAGGTAACCCACTATCACTGCACGAGAGAGAACTGTGGCTACAAGTTTTGCGGCCGCACCCACATGTACAAGCATGCCCAGCACCACGACCGTGTGGACAACCTGGTCCTGGATGATTTCAAGCGCTTCAAGTCTTCGTTGTGCTGCAACTTCCCTGATTGCCAGTTCTCCGGTAACAGCACCCATTTCCACTGCCTGCGCTGCGGCTTCCGCTGCACGGACAGCACCAAGGTGACGGCACACCGTAAGCATCATGGCAAACAGGATGTGATCAGCGCCGCCGGTTTCTGCCAGTTCAGCTCCAGTGCGGACTGCGAGGTGGCTGACTGCAAGTACAAGCTGAAGTGTTCGCATTTCCACTGCACTTACCCAGAGTGCAAGCACACGGTGGTGGGCATGTCACAGATGGATTCCCACAAGCGCAAGCATGAGAAGCAGGAGAGGGGAGAGCTGCCTTCTGTCTCCCCCAACCAGGATGGTaaccatcaccaccaccaccaccaccatgtAGGCCTAGCTGTGCCCCCAATGCCCATGAATATGCCCCCGACCTCGCCCAGCACACCGGGGCTGACCCACAACAACATGGCCATGTACCTCCCTTCAGCAGGGGCCGCCGGTGACTACGAACACCCAGGCTCAGCAGTCAACCTCGACAGCTCTCTGAACCTGGGGACAGACACCAACAGTTCCTTGTTCTTCCTGAAAAATGCTGCTGGGTTGGGCCTCAGTGACTCCATGGACCTGAGCAAAAAGTTGCACCGGGAGCCGCTGTCCCTGGCCACCAGGTCTGGCCCTGCTGCTTCAATGGGCCTGGGCAACCCTCAGGACGACACTACCGGCACATCCGGCGACCTTGAAGATGACCTGTCGGCTGAGGAAGAGCCGCTAGCCGAGGaggatgatgacgatgatgacgaTGAAGAGGAGGAAGCAGAGGAGGACATGAATACAGACTCGTATGAAGATTCCATGCCAGAGCCAGAAGTAGACAAAGACAATGGAGAGAGTTTCGATGCTTCCATGAACCACGCTGACACTTCCCAACTGGATAAAGAGGAGCCGGAGGCTGAGCCCTAATCTATGCTGTAGAAGGAGAACTATGAATTCCCTGAACAAACGCAAGTTTGAGTGGCCTCATTTATCATGCTTAGAGACGCAGCAGATGACAAGAAAACAACCAACTACAAGAAAAGTGAAGGcccaaaatgatttattatgatGTTTACAAGATGAccaacattattaatttaattatgcattaaaaaatgaacagaGAAATAGACAGACGAGGCCCTCTTTTACACATGGGTGGCTATGTAAACCTTTTCCTACACATcagtcttttgtgtgtgtgcatgtttgactttaatttatttgatttcatttgttaCTTtctgtgtgtggaaaaaaaaataaggaaaaaacaATCTCTCTATATATGACTATCTATATAAAGTAGATGTGTGGatgttaatgtacattttaattgcagTCACTGGATTGCAGGACCCTCGTACCAACCCGAAACAGACAAAAAGCGTACATTGCAGGAAATCTTTTATAAAGAATGTTGCTCAAATAATTGATTCAGAAACACCTtgtgtcattattattattattgttattgaagTGCAGGGGCCTGCATCATTGCTTTGACTTTTATGCTTCTCcgttgatttttattattattatttacagttatcACAGTTCTCACTTAAACCTGCTGTCATGGTCAGTGGTGTCATAGGCTCCATTCCATGTGGACATTCGCCTGCATcttcaggacaaacaaacaGTGACCAGTGACTGCAAAGCTTCAGGCCATAAAGCATTGATCTCAGTGAACGCTAGCTCTCACTTGATTTCTGTTCCTTCTCCTTTTCTCAATGAGGACCCATTTGGCATTGCATATTCATAGTGCACTTTTGTATAGATGAGAGCAGATACTAAAGCCTctatttaagacattttgttATCTTTTACATTGATTGCATTACTATggctctttgtttgtttgtttgtttttgcattattctcTAATTGCACAGGCATGACCAGATGATGTGGGGGTGTCTCACTGTAAATGGGTCTGTTTCAATGGCGAGAGTCGTCGCCCCCTGTGTTTCGGAGAGTTTGTAATGTGATGATGGTGCTACTGCCCAGTATGAATGGGAGGAGATTACAGCTATGTCTTTGTTTTGATCCACAAATAGATGTCCTAAAGTGTCCATCAAACACAGAGCAGGAGACAAGCGTCTCTGAATGTAGGGAAAAGATGTTTGTAGgtgttattttcttttccttttcccttCGCAGTTTCTgtagcatggaaaaaaaaaaaaaaaaaacaatagttgcaACAAAATCTGAGGATGGAGACTGGCTTTTTCAAGCTTCTTTTTTCAGAAGCATCATATATCTATTTCTAAAAGAAGAGGAAACGTGGAGAGAGACTTTTTTTCTAGAGGGCTGAATGGAGGACAGACATCACAAAGGCACCACGATGAATGCTAATGCTGGTGATGAAAAAGTGTGTGATTTTATGAATTGTACAGACAGAAAACAATGTTTCaagcttttgttttctctttacaACAGCTGTGGTTTCGCTCCAATAATAAgaagttatttaatatttatgtgacCTTGCAATGAGAAAATTCTAGGgtgtttttgcactttttaggttcatttttaccttttgaAATTATGGCATATATCTTTTAACAGGgaatttgctttaaaatgttgtttagttCACTTTGCTTTGATGCACAAATAGTCTTCAGTGTGACGAAGAACTGttgttctgtgttttatttaagaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaagttttttcttcGCTTCCAAGATTGGATGATTTCAATATGAAACAGGCATGCTAGAACCTGGCTTGTCTAACGAGTAACACTAATGATGactgtaatttaaatgaattctaTACAGAGGAAATTATTGCAGTGCTTCgctccaaattaaaaaaaaaaaaaagagagagaaaaatgatttttgtttgcttggCCTCCATTGAATATAAACAAGGAAAAGCGAGGCGAggaaattatgaattatttccTAAACACGGCTTTGATCATAATATAGGCAACTAAATGTGTAGATGGTTATCTTCGACAATATTGtttcaggaagaaaaaaaaaaaaaaggttgtatagtattttcttctgtaaaaactatatatgaacaaaaatgctCTTTGATTAAAAGcttcctttaaaaagaaaataaaaaggagaaataaagaataaaaagttcaaaactgAACTAACACCAGTATAGTttgcttgtatgtgtgtgtgtgcgcgacaGTATGTAAGCGTGTGAGTGTGaggttttattgttattaccaTGGTTTCCCCATAGTAGTAGAGGAATTAGTGGTAATTAAATCTATACGAGTCACATTATTGTAGCACTGAACATTGGAGTGTATTTCTACCTTTTACGCAACAAAGTCATCATTTTCAAAGCTGTATATCATGTGCGATCACAATAACGATGATATCTGCATAATTTAATACCATCCACAACTCTTTGTTTGCtattgttttggtgtttgttttatttaattgaacttATGTATTTTGCATATGGCATGCCCCTCTCACAGGCCGTTTGTTCTCTGGTCTCAAGTGCAAAGGCGCAGGACTCACACTGAAGCAGCTGTTTGCCTGGGAGATACTGTGcacttgaatacattttatgtgtgtAAAATAGCAGGATTTGTAAAGAGTCGAAATAAAGaaattctaattattataacaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K25209 CASZ1; zinc finger protein castor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230942 lncRNA downstream 70722 8628699 ~ 8629103 (-) True G155933
TU230786 lncRNA downstream 74183 8624926 ~ 8625642 (-) True G155825
TU230759 lncRNA downstream 166898 8526402 ~ 8532927 (-) True G155803
TU230697 lncRNA downstream 317218 8307279 ~ 8382607 (-) True G155759
TU230649 lncRNA downstream 522307 8176699 ~ 8177518 (-) True G155737
XR_006247890.1 lncRNA upstream 293126 9070384 ~ 9072944 (-) False LOC122329247
XR_006247891.1 lncRNA upstream 293126 9070384 ~ 9072938 (-) True LOC122329247
TU230977 lncRNA upstream 302275 9079533 ~ 9097263 (-) False ctnnbip1
TU230983 lncRNA upstream 375822 9153080 ~ 9153502 (-) True G155968
TU231000 lncRNA upstream 411255 9188513 ~ 9188897 (-) True G155979
XM_043225269.1 mRNA downstream 142794 8554507 ~ 8557031 (-) True LOC122329065
XM_043225560.1 mRNA downstream 714351 7978891 ~ 7985474 (-) True gata5
XM_043225407.1 mRNA downstream 744830 7932443 ~ 7954995 (-) True LOC122329207
XM_043224019.1 mRNA downstream 767721 7922253 ~ 7932104 (-) False tm9sf4
XM_043224607.1 mRNA upstream 135805 8913063 ~ 8919763 (-) False c23h1orf127
XM_043224606.1 mRNA upstream 135805 8913063 ~ 8919725 (-) False c23h1orf127
XM_043224605.1 mRNA upstream 135805 8913063 ~ 8919725 (-) False c23h1orf127
XM_043224604.1 mRNA upstream 135805 8913063 ~ 8919725 (-) False c23h1orf127
XM_043224610.1 mRNA upstream 135805 8913063 ~ 8919666 (-) False c23h1orf127
TU230789 other downstream 71434 8625758 ~ 8628391 (-) True G155827
TU230763 other downstream 147848 8545394 ~ 8551977 (-) True G155807
unassigned_transcript_2616 other downstream 494309 8205423 ~ 8205516 (-) True trnai-uau_41
unassigned_transcript_2615 other downstream 494609 8205123 ~ 8205216 (-) True trnai-uau_40
unassigned_transcript_2614 other downstream 495136 8204596 ~ 8204689 (-) True trnai-uau_39
XR_006247823.1 other upstream 135804 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other upstream 135805 8913063 ~ 8919725 (-) False c23h1orf127
TU230970 other upstream 144306 8921564 ~ 8926610 (-) True sst6
XR_006247818.1 other upstream 418969 9196227 ~ 9209964 (-) False ccdc187
TU231373 other upstream 1024527 9801785 ~ 9808232 (-) False hmgn3

Expression Profile