RNA id: XM_043224380.1



Basic Information


Item Value
RNA id XM_043224380.1
length 2709
RNA type mRNA
GC content 0.39
exon number 11
gene id pfkfb1
representative False

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14649780 ~ 14659932 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAATGTATTTGATGCCACCAACACcacaagagagagaagaggagtcATCATCAGTTTTGCCAAGGAGAAGGGCTATAAGGTGTTTTTCATTGAGTCGGTTTGTGACGACCCAGAAATCATTGAGGCAAATATAATGCAAGTAAAACTAAGCAGCCCAGATTATGAAAACTACGACAAAGAGGAAGCACTGGTGGATTTTCTGAAGCGTATTGATTGTTATAAAATGTCCTATGTTCCCCTGGACGAGGAAAAGGACAGACACCTCTCTTTCATTAAGATCTTTAACGTGGGATCCAGGTACCTCGTCAACCGCGTCCAAGATCACATTCAGAGTCGTATAGTGTATTACCTCATGAACATCCACGTCACACCACGATCCATCTATCTGAGCCGCCATGGAGAAAGTGAGCTCAACCTGTTGGGACGAATCGGTGGAGATACAGGCCTCTCTTCACAAGGCCAAAAGTATGCTAAGGCCCTTGCAGATTTCATCAGGGGTCAGTCCATCAAGGACCTGAAGGTGTGGACAAGTCACATGAAGAGGACCATACAGACTGCAGAGGCACTTGGTGTCCCATATGAACAGTGGAAGGCGCTGAATGAAATCGACGCGGGTGTATGTGAAGAGATGACGTATGAGGAGATTCAGGCAACCCATCCAGAAGAGTTTGCTTTAAGAGACCAGGACAAGTACCGCTACCGATATCCAAAGGGTGAATCATATGAGGACCTGGTGCACCGTCTAGAGCCAGTCATAATGGAGCTTGAGAGACAAGAGAATGTGCTGGTCATCTGCCACCAGGCAGTCATGCGTTGTCTACTGGCCTACTTTCTTGACAAAAGTGCAGATGATCTACCATATCTAAAGTGTCCTTTGCATACTGTTCTCAAACTAACTCCATTAGCTTATGGATGCAAAGTGGAGTCCTTCTATTTAAACATCcaagcagtgaacacacacaggGACAGACCCACAAATGTGAATGTCGCGAGAAAGCCAGAAGAAGCACTACAGACTGTCCCTGAACAtctataatcataaaaaaatcttacatttttgcagtttttgcaCAATTAATCTACACACAGATTGTGTAAATGGATAACAAGGTGACAGGAAGGAGCACAAAAGTGGGATCCAAAAGtctcaaaatgtaaaacaaaacaaattgactgactggatttttttaaaatgtatttccaaaACTTCTTCAAATTTAGTGGTTAATATGAATtctttacaaattatattaatattgtattaaattagattcgtaaactttttttttttttttttttggcattttaactAGGCCTTTCAGACTTTTGAATTGTACTTTAGTTTTTCAAACTAAATTGTTAAAATCAAGTGTTTGTACTTTGTTGCATTAGCCTAATGTTTTTAGTTGAAATGGTTGTTGCaactaaagaacattttattgctgtttttatcttttactagtttaaaatgtttggttaGAATAGGTAAATTCCCCATCGTGTGAAAGTGAATggtctttattttaatatttttaattttgtgttcaaAGATCTGGACAATAGTACCCGTTTGTACATTCATAAAACGTTAATCACAAGACGATTCGGTTAGTTAAcagcaccatggacagcaaccaaacaaataaatctatattaGCCGTCACAATCTCACACGAGACCCTTCTCAAGCCACTTGACTCCTcacaattcattatttattagtacGTTCACGAGCGCCTGTCCAAAACCCCTCCGACCTAACCGAGATTTCTAGAATAAACATTCAGTTTCTAAATACTTCAGATATGGTGACACTGATGCAGTTTTAGAACAATTTTGTAACGACTGAAATGTAGGCACTGACgggttaatgtttttttttttttttcgtggcCCCCAAGACCGTGGCGAGGCTCTGCGAAATTTCCAGTGTGCGCACGTGAAAAGAGCTCCGCTTGAAACCCACAAATACCTGCGCGTGATTCAAACTCATTCGTCATTACGACCAAGTTATTTTTCCAGTCCAAATGTGCATCCGTCTCTCTTATGGCATTATCGTGGCTTCGGTATCATTTTTAGGATCGGTTTGGGAGGGAGGGGGCAACACTGCCCCTTTCATAAACAACTTTGTGCAGTAAAATGTGAAGTTAGTGGAAGACCTTGCGCACTCGGCTTGTCTTTCCCGCACCATCTGCAGGCATGGATGTTAAACTGGATCTGACTGTACTCGTTTTAATCCTACTTGCTCTTGTTCCTTTTGGATGTGTGCCATCAGTCCCTCTCCAGGTATGTGTACTTGGTAATGGCTTTATCATGCAGAATTTTACActtaaacattattttctcGATTGTTTTGTGACGTTAGTAAAATGTGAAGTTTGTCTTGTGACGGTATTTTGGACGACGCAAACACATTACGTGAGAAAAGTCAAgtatcatttaatcatttctgtATCAGTggtttttaggatttttataTCGTTTATCTGCTTGTAgaacttttttatattgtgtttggATGCCTTAGGAAACGGAGGGTTGTTAAATAACATAATCTGTTTACAAACGTTTGTTAATCGTAATTTTATTGTTAGcaacatttgtgttttcttatgtagttttttttttttttttaaattgtgcattACACTGGAATCTTACAATGTTGTAATAAAGATTCCCACTAGGTCATTATGTGAGAAATTCAAA

Function


GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0006000 fructose metabolic process biological_process
GO:0006003 fructose 2,6-bisphosphate metabolic process biological_process
GO:0003873 6-phosphofructo-2-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU233377 lncRNA upstream 18111 14623815 ~ 14636817 (+) False pkig
TU233410 lncRNA upstream 18807 14631840 ~ 14636121 (+) True G157626
TU233407 lncRNA upstream 25730 14627590 ~ 14629198 (+) True G157624
TU233375 lncRNA upstream 31200 14603793 ~ 14623728 (+) True pkig
TU233373 lncRNA upstream 31200 14604018 ~ 14623728 (+) False pkig
TU233380 lncRNA downstream 12212 14672144 ~ 15153978 (+) False itih6
TU233426 lncRNA downstream 16804 14676736 ~ 15158751 (+) True G157630
TU233434 lncRNA downstream 40008 14699940 ~ 14702175 (+) False G157633
TU233435 lncRNA downstream 40008 14699940 ~ 15181831 (+) True G157633
TU233436 lncRNA downstream 42511 14702443 ~ 14702869 (+) True G157634
XM_043223964.1 mRNA upstream 5696 14647107 ~ 14649232 (+) True si:dkey-78k11.9
XM_043223963.1 mRNA upstream 7966 14642391 ~ 14646962 (+) True ccn5
XM_043224566.1 mRNA upstream 31197 14604009 ~ 14623731 (+) False pkig
XM_043224567.1 mRNA upstream 31197 14607928 ~ 14623731 (+) False pkig
XM_043224022.1 mRNA upstream 51275 14600227 ~ 14603653 (+) True ttpal
XM_043224986.1 mRNA downstream 20928 14680860 ~ 14686618 (+) True LOC122328906
XM_043224997.1 mRNA downstream 52502 14712434 ~ 14714555 (+) False LOC122328914
XM_043224989.1 mRNA downstream 65978 14725910 ~ 14758217 (+) True LOC122328907
XM_043224987.1 mRNA downstream 65978 14725910 ~ 14749563 (+) False LOC122328907
XM_043224988.1 mRNA downstream 65978 14725910 ~ 14749514 (+) False LOC122328907
XR_006247782.1 other upstream 311654 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 598107 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 600428 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3136392 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 3139057 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233368 other downstream 24058 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 52215 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 76069 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 332418 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 640772 15300704 ~ 15304550 (+) True G157620

Expression Profile