RNA id: XM_043224386.1


Basic Information

Item Value
RNA id XM_043224386.1
length 7535
RNA type mRNA
GC content 0.49
exon number 15
gene id ncoa6
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2004331 ~ 2017858 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCTGTGACCATAACCTTCTCTCGCGGGCGCGCGGCTCGAGTGCGCGCGCAGCGTTGAACTGACGTGCACAGCCGCCTCGCGAACGCGCCGTTAGCGTCTGCTAGCATAGAGCTGTTTACTGCAGTAAAACCACTCCTGATGGACTGACAACGTGTCACTGTCTCCAGAGGCTACGCAGCTCTTTTGGTGAAGGGCTATGGCGCATCAGCTGTCCCTGGATGCACAATCCCCTCAAGCCATCCCACTCACAGATCACGACTCCGGAGTGGAAGATGGAGACGATGGCCCTTGCAGCCCTACCACAACCTCCACAATATATGTTGCCTTCAAAGGGAACATGAATGATGAGGACTATCAGGAGAAGCTGGATACCATCTTACAGGGGATGCCGGATATGCTCTTACTAGGTACTAAGAGACTCAAACCCGAGCATGTGGAGCCGTGGAACAGCGTACGTGTCACTTTCAACATCCCCCGAGAGGCAGCCGAGCGACTGCGCCTCCTGGCTCAAAACAACCAGCAGCAGCTGCGGGATCTGGGCATCCTGTCTGTGCAGATTGAAGGTGAAGGGGCCATCAACGTTGCGGTTGGACAGGGCCGAAGTCAAGAAGTAAGGGTAAATGGACCCCTTGGTGCTCCTGGTCAGATGAGAATGGATGTTGGATTTCCCATGCAACAGGCTGGAATGCGTATGAATAACCCATCGGTGTCCATGATGCCTCCTGGGGCTAATATGGCAGCACAGGGAATGGTACAAAATAGTGGTGGACCAATGCAGCCAAGGGCACCAAGGCCGCCTTCACAGACAGACACAATGGATCCCATGATTTCAGGGCTGGCCTTacagcaacagcaacaacaacttCAACATCCTCAAGTGGGACATGGTCCACTTGGTAACTTAGGCCCACAGGGACATCACATGCAAGCCATGCAAGCAAATCGACAGCTAAATCCAGCAGCCCTACAGCAACttcagcagcaacagcagcagcaccaACAACAGCAGGTTCAGATGGCTCAACTAGGTGGTGCACGTGGTCCTTTCAACCCCTCCAACCAGATGCCTGTACCCCCTGGCTGGAACCAGTTGCCTTCTGGTGTTCTCCAACCACCACCCGTCCAGGGTCCTATGGGACCAGGTTGGAGGAAAGCCCCACCACAGCCACAAATGGGGCAGCGCCAACCCTCTTTGGCATCTGTTCAGACGCCCAATCATCCACCACCACCATATCCATTTGGAAGCCAGCAGGCTTTTAGTACAATGCCACAACATCAGttgcagcaacagcagcagcagacagGGGCAAACCAGTTTGCAACCCCTCAGCCCAAAGTCCCTCAGGGTGCACCAGGTGTCGTTGTCTCAAGAGCGCCACCTCCTCTGCCTCCCTCCTCTGTCCCACAAGGAGGTCTCACAGCCAAGTCCCCTGGTTCTTCGTCATCTCCTTTCCAACAGGGCTCACCTGGAACACCTCCAATGATGGGACAGGGACAGGGGCAACTTGGTCCCCGTCCCACAACCCCCCAGGGTTTCCCACAAGGTGTTGGATCTCCAGGAAGAGCTGTGATGGGCCAGCAAGGAAACATTCAGCCCGGCTTTATGGGCATTCCACAACATGGACAGGTTCCCCAAGGTGGAATGGGAGgTATGCCCAAACGAATGCCAATGGGGTTTCCAAATGCTCCTGTTAATCAGAACTTTGGACAAGGACAGGTTACTACCACTGGAGCAGGTAGTACACCCCAGCTGCAAAATAATCAGAGCATGGCAAACACTGGTGTCCAGTCATCCGCCTCGGCGCCAAATCACATGCAGTCAAATCCCCTTCAGGGTGCTCCAATGACCCACCACAGTGGCATGCCAGCTCAACCTCCAGGCACCACCTCAGGAGGTAGTATGGGACAACCTCAGCAAGGTCTTCAGACTCAAATGATGGGTGTACCACAATCACAACATCAAACACAGGTTGTAGCTTCCACCCAAAGTCAAATGGCACAGAGCCAAACAGGGGGCCAGACTATTTTGTCCAGACCGGTGAATACTGGGCAGCGAGGAATGACCCCTCCTAAGCAAATGATGCCACCACAAGGTCAAGGGATCATGCAGAACCAAAACCAGTTGGGTGGAGGACAGGGACATCAGGCTTTATTGAttcagcagcagcaacaacagcagcagcagcagcagcaacaacagcagcagcaacaacagcaaaacGCTATGATGGAACACATTGTAGCAAGTCAGATACAGGGTAACAAGCAGGCCTTTGGCCCAAAAGGTCAACCTGGTGTAATGCAAGGCCAGATGATGAGAGGTCCTTCACCTAATATTCAAGGTAACATGCCGCAATTTCAATCTCAGATGGGTCAGCAACAAATGACTCAACAACAGCATcagcaacagcagcaacaaATGGCTCATttgcaacaacagcagcaatTACAACAACAGCAACTACAGCAACAGCAGTTACAACAGCAACAGCTACAGCTGCAACACCAGCAGCCACAACAAGCACAAATGCAACAACAACAGCTACAGCAACCCCATCAGCAAATGGTACAACAACAGTCTCAACAAATTCCAATGAACGGCAACCCTAACCAAGCATTAGGGATGCATGGGCCTCAAATGCGACTTCAAGGAAATCATCATTTAGTACAACAACAGCTTCAACAAAAGCAACAGCAGGTGATGTTGCAACAGCAACAGGCTGGTCAGCAGCATCAGCACCAGTTAGGAGATAGTAGTGGAAATGCTGATATCAGCCAACAGATGGTTCCAGACCTGCAGAATCAGCAACAACAGCAGGGTATGTTGGGGAATTCTCAACACATGCAGGTTGGCAATGGCCATTTTCCTGGTCATGGCATGTCCTTCAATCCTCAGTTTGCGGGTCAGATGCCAATAGGAGGCCCATGTGGCCAAGCTGGTGGATTTCCAGTGAACAAGGATGTAACACTAACCAGTCCCTTGTTAGTAAATCTTCTCCAAAGCGATATTTCTGCCAGCCAGTTTGGTCCTGGTGGAAAGCAAGGAACAGGTGCAGTTGCTGCTAACCAGGTCAAGCCTAAAAAGAAGAAACCTCCACGTAAGAAGAAGCCAAAAGTAGAGGAAGGACAGCAGTCTACTGATGGGCTGTGTGGTCTGGATTCACTGCCTCATGGAATGGAGGAAGTAGAGATGCAAGGGCTGGGAGGTGATCAAGGGGGTGGCATTGACTCCAACTCGAAACTTTCTGAATTCGCTAATCGACCAGGTCTGCCTGGTCAGTCTGGAGATCAAAGGGTATTACAGCAAATGCCAATGCAGTTCATGCCCCCACAACAGCAGCAACAGATACAGCacatgcagcagcagcagcagttgcaacaacaacagcagcagcagcagttacaacagcagcagcagcaacaaatGCAGCAGCAACAAATGCAACAACAGCATCAACAGATCCAGCAACAGCAAATGCAAcagcaacaaatgcaaatgcaggGTATGCAGGGCCCTCAAGGTCAAGCTGGAACATCACAAGGACCCCATCATGTCCAGAGCCAGATTCATTCACAACAGACAATGCAGatgcagcagcaacaacaaccaccaacaccacaacaacaacacctCCAACAACAATTGCAGTCACAGCCACAACAACAggcgcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacagcagcagcagcaacaacaacaaatgatgatgatgattaaaaTGCAACATGAAGCTAAAAATCGAATGCCACTACAGCAAGGTGGGCACATGCAGAAGAGTTTGATCAATCCTATTGATCCATCTCAGAGAATGCCTGTTTCACAGCCAGGAAACATGCCTGTAATGATCGATCTTCAAGGGCATGGAGGTGTTCCACCTTCTCCTGATAAAGCCAGAGGAATGCCACTCATGGTAAATCCAACTCTGACTGGACCAGCAAGAAGGACACCCCATTCAGAGGTTGGACAACCAACACCACCAGAGGAAACCCCTGGTAACCATAGCATGCAGGACCGGGGATCCCTTGAAACTGTTCAACAATCAGGAAATGGAAATCAACCAATGATTCCCAATCAAGGTCCTAATGCtcatttaatgaaatctgtgcctTTATCAGTAACCCACCAGCCAGGAGCAAGTCCCCAACAGCAGTCTCAGCAAGTGGCAGCAATGGCTGGCTCACATAATATTCACTTTTCCAGTGCTCCTGCAACTTCCCAAAGTTCCCGCCCTAAAACCCCTAACCGAGCCAGTCCTCGGCCATATCACCACCCTTTAACTCCAACAAACCGTCCACCTAGTACTGAACCCTCTGAAATAAATCTATCCCCTGAGAGACTGAATGCCTCTATTGCTGGTCTTTTCCCTCCAAAAATTAACATTCCTCTGCCACCACGGCAGCCAAATCTTAATCGAGGTTTTGATCAGCAAGGTCTTAACCCCACCACACTTAAAGCAATTGGCCAGGCTCCACCCAACTTATCAACTCTTCCTGTCAACAATAATAACAGTGGTAACAATAATGGCCCACAGTCTTATGCATCAGGTGTTGGCATGGTAAGCTCTGgaggaaaacaagacaaacagaCTGGTGTTGGGCAAGCTAAAAGAGCTAGTCCCAGTAATAGTCGTCGATCTAGCCCTGCCTCAAATAGAAAAGCTGCCACTCCAAGCCCAGGAAGACAGAAGGGTGCCAAAGCATCATTGACATCACCTACACATCCACAGCAAATGATGGTTAGTCCACAGAACGTGATGGTTAGTCCTAACTCAGTGCTCCCAACTACCTCTGCATCTTTGCCATCAGCAGGACCTGTAGAATCACATCAGAGTTTAAATTCTCTGCAAACCCTACCAGGTAGTGCCGACGCAATAAGAGATGGCCAGGTAGTGACTACGCAAGCAGAGCAGCATCAGGCAGTTCAGTTTAGAGAGCAGCCTGCTCCTAAAATAGCAAGCCCTCGGGTGCCTTCTCAGGAACCCAAACGGCAAGAACTTAGCAATTTGGTTGAACAGCGTGCTGAAGATAAACAACAACCTCGGACAACACCACAACATGACCATGGCTCTGCTGTATCACCAGCATTTAGAGATGCTCCAACATCTTTGAATCAGCTATTAGACAATGCAGGGGCATCATCTTTGTCAGTGAAGTCTCAAAATATTCCTCAAGTGGGTGGAGAACCTGTGCAGAAGGAGAGTGCTCATGCTCCACCAGCTCAGGAGAACCAATCCAATCCTGTTGTCTCACAGAGCACAAGTATTGTCACCACTTTGTCTACAAGTGAAACTGATCAGAAACCTAAACCTGCTTCAGTATCAAGTCCAAATATCGTAGCCAGTAGCAGTGCAAACCTGCAGACTGTCAGTGCTGTATCAAGTGTTAGTTCAAACCAAACCGTGCTCTTAAGTCTTACTTCAATACCCAACCCTTCAGTAAGTTCAAATCACAATCTTATCCCCATCTCAAATGCTTCTCAAACTGTCTTGCAAAGGCCAATTTCATCAGCGGCAACGCCACAAAATCAGATCACGGTCTTTGTAACCTCTAATCCTATTAGCTCTGCTACCAACACAGCTTCTGTGGTTCCTTCTGCTGTTGTATCCAAGGTTCTGGCAGTTCCCAATAAAAACATAAGACCTCCTGATGTTCGACAACAAAATCCTTCACAAACACGTCCACAGTACATTGCAGGATCTGTGTATTCAATATTTCAAGCTGCGCCGGTATCATCAAGTGCTAACGTCATGTCTCAACCTGTCACTATGGTTGGTATCCAGCTTACTCCTACCCCGGTGTCAACTACATCACCACCTTCTGCGCCAGCCTCAACCTCTATGTCAACAAACTCTCCTGCTGTCAGCATAGCAACTACTCAGCAGAGCCGCACCATTGTTGGGCAACTTCAAGTTCAAGTACCTGCAAGTCAGGCTTCCCCTGTAAATGCAGTACCACCACCTCAACAGCCAAGCCCTGGAGTGCCCAAACCAGATAGTGTCTCTGAATCTAGTGGCCCAAAATCTAGTCCTGTTGGGCAGTCGGCTTTACATGGCATGTCCTCACCCTTTCAGCAACTGTTGGCTTCTCCACCACCTTGCTCTAGCCCAGGGGCTACGGCTGTTGCCCGCAGAAGTCCCCTGTCTTCAACAACAATGTTAGTCAAAAGCAGTCCAGTCCAGACAGTTGTAAGCAAACATACCGTGCCCAGCATCTCTTCAAGCAGTGCCGATGATCAAAAAGAGCGAACCCCTGTCACTCAGATTGGAAAGACTCTGGATGTTGCCACAACTCAAGCTTCTTGTGCAGTCACATCTGAAACGGTATCTGCACTCCAGCCCACTGCTCCAGCGGCTGTTCCAGTGGCTCAAATAACATCTCCGCAATCTGCACTTCCTCCAAAAGTTTCCTCTCCTGAACCTGTTCCCACTCCTTCTCCAGTCCCTACTTCTACACCGTCGTCTAATATGCCGCCCCCAGCTTCTACCACTGGAATGGTTCACTTGTCTAGTCCTGTTGCTACTTCTTCACCACCGTCTGCAGTTTTAGTTGCTGCACCCACTGCTGCTCCAGGACCTCCCACTACAACCTCCAGCCCCTCCACAGCAACACCCGCACAGCTCTCTGGGGAACAGCAGCCTTCTTCACTGGTGGAGACTAGTGTACCAAACTCTGCTGAAACAAAAGCAACTGTAGATCCTCCTGCTGTCTCAGCTCATCCTGAAGCTCCACAAGAAGAACAAGCTTCATGTGACCAAGCTGGACAAGGGGTCACCACTGCAGCAGAACAAGGATgggcaaagaaaagaaagacgcCCGTCAACTTAGCCCCAAGGGATACGAGGGCCACCACTGAGAAAGCAAAAGGTCCTAGTCGACGAAGCTCACGAACAGACAAGGAACCCGAGGAGGAAGCATCTGACAATGGACAGAGAAAAAGAGCTGCTAGGCCAGGCTCAGCCTCATCGAACGCAGGAAAAGAATCAAACACTGGAGCCAGTCCCACCCAGGCAAAACGAAGGAAGTCAAAGTAATCATGACACATGAATAAACCTGTGaattgtacattattttttttgttgttgttttctgaaCTTGTTTTATCTgctgtttttccttttgttcTAAGCAAGATAACCATGtacagaaagtttttttttttttttaaatcatgataCTGTATTTTGTTCCTGGCTACTAGATGAGATCACTTTTAGAAATGTGTATGATGTGTTTGTATGTCATTGTTTTtggtgtgactttttttttttttattcttaataatTTTGATCAATTCTGGATTAATCATGTGATGCAGACTAAGAATAGAACCATGTCTGTAGTatcacaatataataataataatgtgacaGAATCGGACTTTGTACTTTCCACCCCCACGTCCTAGGATATAATCATGAATTAACTGTGCATTTAAGTACTGTCACCCATTTAGCCCCTGGATCACAtgcattaaactatttttacaagTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228138 lncRNA downstream 195326 1808555 ~ 1809005 (-) True G154077
TU228125 lncRNA downstream 288360 1715243 ~ 1715971 (-) True G154064
TU228122 lncRNA downstream 292289 1711732 ~ 1712042 (-) True G154061
TU228119 lncRNA downstream 296876 1707139 ~ 1707455 (-) True G154058
TU228118 lncRNA downstream 297736 1706275 ~ 1706595 (-) True G154057
TU228319 lncRNA upstream 28465 2046323 ~ 2046544 (-) True G154188
TU228325 lncRNA upstream 59706 2077564 ~ 2079496 (-) True G154194
TU228327 lncRNA upstream 74890 2092748 ~ 2095915 (-) True G154195
TU228334 lncRNA upstream 78926 2096784 ~ 2097008 (-) True G154200
XR_006247848.1 lncRNA upstream 81396 2099254 ~ 2102158 (-) False LOC122328884
XM_043225363.1 mRNA downstream 734 1998699 ~ 2003597 (-) True zgc:114123
XM_043224813.1 mRNA downstream 8326 1982649 ~ 1996005 (-) False top1b
XM_043224812.1 mRNA downstream 8326 1982649 ~ 1996005 (-) True top1b
XM_043224810.1 mRNA downstream 23366 1952150 ~ 1980965 (-) False plcg1
XM_043224079.1 mRNA upstream 512 2018370 ~ 2028499 (-) False LOC122328402
XM_043224077.1 mRNA upstream 512 2018370 ~ 2028499 (-) False LOC122328402
XM_043224078.1 mRNA upstream 512 2018370 ~ 2028001 (-) True LOC122328402
XM_043224082.1 mRNA upstream 11192 2029050 ~ 2038336 (-) False LOC122328403
XM_043224081.1 mRNA upstream 11192 2029050 ~ 2038334 (-) False LOC122328403
TU228042 other downstream 492002 1507810 ~ 1512329 (-) False smim29
TU228038 other downstream 492040 1507698 ~ 1512291 (-) True smim29
TU228039 other downstream 492040 1507810 ~ 1512291 (-) False smim29
TU228037 other downstream 492040 1507885 ~ 1512291 (-) False smim29
TU228040 other downstream 492040 1507885 ~ 1512291 (-) False smim29
XR_006247837.1 other upstream 84852 2102710 ~ 2116883 (-) False LOC122328833
XR_006247839.1 other upstream 753549 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 769438 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 907190 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 907671 2925529 ~ 2951628 (-) True G154445

Expression Profile