RNA id: XM_043224394.1


Basic Information

Item Value
RNA id XM_043224394.1
length 2416
RNA type mRNA
GC content 0.45
exon number 10
gene id tpd52l2b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10903880 ~ 10914203 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGTGGACGTCATCTCCGTGCGCCGGAAGGAAAGCGTACTTGGGCAGCTCTTCAAGCTGAGTTGGCTGATCGCTCGGGATCTTGTGTTGGCTTGTCAAGCGCTTTTGGATGTTTTGGTAGTAGAGGAGACACGCATTTACGCCTCGCAGAGCTTTTCCCCTCCGAATTACGTAACTGTCAAGACAACGTTTTGAAGATTTCAAACGACGACATGGATTCCGCCAATCaagACATCAATCTGAACTCTCCacataaaggcctgggctctgaCTCTCTCTCAGACGTGACTGAAGAGAGGGGGGCCGCTGCCGTGAGTCCTGGGACTCTCCCTCCCGGCCTGACAGAGGAGGAGGCCGAGGAACTGAGACTGGAGCTCACCAAGGTTGAGGAGGAGATCCACACCTTGAGGCAGGTGCTGTCGGCTAAAGAGCGCCATGCGTCGGAGCTGAAGCGTAAACTGGGCCTGAGCCCCCTGAGCGAGTTCAAACAGAACATCACCAAAAGCTGGCAGGATGTCCAGACCTCAAACGCCTATGTGGTGATGTCCGAGAAGCTGGGCCAGTGGAATGAGAAAGTTGCAGGGTGTGATATATATCTTTCAGCTTCTGCCACTCTGGATGACATTGCCAGCTCTGAAGTGTATAAAAAGACTCAGGAAACGCTGTCTCAGGCTGGACAGAAGACCTCAGCCGCCCTCTCCACCGTTGGCACGGCCATCAGCAGGAAACTGGGTGACATGAGAGCTCTTCCTTTCTCTAACTCCTTCGGTAGCAACTACTCCATTCGCCATTCAATAAGTATGCCAACTATGAGGAACTCTCCAACCTTCAAATCGTTTGAGGACAAAGTTGGAAACATCAAGTACAAGGTGGTTGGAGGCAAAGCCAATGGAGAAAGTGCCCACTCTCCGAACGAGTCAAACCCGGTGCAGGACAACGCTCCGTTCTGAGAGCCCGCCCTCTTGATTTAAACACTCATCTCATTCTTTGTGAATCCTGACTACACCCACACTTCCGTTCTCCCAGTTCTCCCGTTCTCTCTGAATTCTTTCATCCCTCCTTCCTCTGTCTCCTTTGACACCCCTCCACCTACTGCTAGCATGTGCTTGCTCATCTCACTCGAAACACACACGTAGTACAGATCCTGTGACACGAAATCATCACAGCTTGTACAAAAGAAGACAAACGATGAATCATTTTGTATTAGAAACTATTTTACACTGCTttgcataatgtttttacataacTTTTATCTATATATGACTATAAAGGAATacaaatataaactatatttaaacagTACTGCCAAGCAGCATTCATCAGGCGGCAGAGggaaacaaaatacacaaagaaGAAGTTAAATCTGAAGCGGGGGGAGGATTTTAGAccaataaagaaaagaaacttgCTGCAGGTTTCTATGCTGCTGAGCGTTCAGttgagttgtttttttacaatgtgaAGCGATGCTTTGCTGTACACCTGGTGAATGTCGGCCTTACACTGGCACACTCTATTGCTCTATCGGTCCGTTGCTGGTAAAAACCTTACACAAAGTTGTTTTTCGTTTCACCTTTGCTCTTTCTCGCTCGTGTTCGTTTTTTCATTAAtgggaatgttttatttatgctgtAGACGTCGGAAATCGCTCGCCTTTTGCTTCGTGCCACGCTGTGTGTGCCAATTAGTAGATGCCACAGACCTTTTGCTGTCAGAATGTTACACGCTATCACCAAACTATCACATCACAAAGATCACCGTTCAGTTTTAAGGAATAAAACACAGATACTTTCATGTGCACTTAAGTGGCAAGTAAGTCCTGCTAAGTAAgactattttcttttattgtttcttttgtgGCATTTATCCCCCCCCCCCCAAACAGACGTGAACACTAGTGTTGTCTGTATGGTAGCACAGTCACTTTTTACCTGAAAGATATTGGAATATATTTCACCATTAGCAAGTGTAATCTCTTATTTTCGCCTCATTTTTGATATTTCATTCACTTGTATGGGTGTCAGTGGGTGGCCTTGTTTCAGTATACTAAACGATGATGATCACATGCCTCATTGGGTGAGATGCAAGGGATTACATACATTTGACTGACCGGTGCAGATGAGGAGATTTTTCTGCTCGAATCCACGCATGATGTGGATACACCTGTagttctgtaaaaaaatgagaaagatCGTGAACGTTCAGAGGGAAAGGACttcttttgtattattttgagtAGTCGTTTTCAGGAGGTCGTTTAGGGAACATGCACCGTATGGCTTTAAATTAGAGATCTCAGTCTAGCTCTTCAGATTTAAAGgatcagattgttttcttttagaacAACAGTGGTGTAATGCttcatactttttttgtcagttgtTTGTATATCAATAAAGCATTCGTTTAAACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247879.1 lncRNA downstream 21228 10880591 ~ 10882652 (-) True LOC122329022
TU231736 lncRNA downstream 175632 10727964 ~ 10728248 (-) True G156478
TU231724 lncRNA downstream 201059 10702596 ~ 10702821 (-) True G156471
TU231719 lncRNA downstream 203656 10698597 ~ 10700224 (-) True G156469
TU231718 lncRNA downstream 207203 10696452 ~ 10696677 (-) True G156468
TU231828 lncRNA upstream 45438 10959635 ~ 10959846 (-) True G156538
TU232081 lncRNA upstream 119545 11033742 ~ 11035495 (-) True G156715
TU232086 lncRNA upstream 132948 11047145 ~ 11053295 (-) True G156719
TU232088 lncRNA upstream 136096 11050293 ~ 11057995 (-) True LOC122329093
XR_006247882.1 lncRNA upstream 137039 11051236 ~ 11057975 (-) False LOC122329093
XM_043225174.1 mRNA downstream 2094 10899826 ~ 10901786 (-) True ppdpfb
XM_043224780.1 mRNA downstream 138872 10730061 ~ 10765008 (-) False dnmt3bb.1
XM_043224779.1 mRNA downstream 138872 10730061 ~ 10765008 (-) True dnmt3bb.1
XM_043224776.1 mRNA downstream 176311 10718234 ~ 10727569 (-) True dnmt3bb.2
XM_043224777.1 mRNA downstream 176364 10709346 ~ 10727516 (-) False dnmt3bb.2
XM_043224393.1 mRNA upstream 1434 10915631 ~ 10923080 (-) False trim101
XM_043224392.1 mRNA upstream 1434 10915631 ~ 10923080 (-) True trim101
XM_043224409.1 mRNA upstream 8929 10923126 ~ 10934907 (-) True dnajc5ab
XM_043224410.1 mRNA upstream 8929 10923126 ~ 10934905 (-) False dnajc5ab
XM_043224127.1 mRNA upstream 71188 10985385 ~ 10987412 (-) True bhlhe23
TU231697 other downstream 225831 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 536511 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 664607 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 671961 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 1070198 9832128 ~ 9833682 (-) False zgc:153284
TU232124 other upstream 186547 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 603813 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 827203 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 827203 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 828473 11742670 ~ 11742803 (-) True LOC122329333

Expression Profile