RNA id: XM_043224409.1


Basic Information

Item Value
RNA id XM_043224409.1
length 1543
RNA type mRNA
GC content 0.45
exon number 6
gene id dnajc5ab
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10923126 ~ 10934907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCGGAGACGCCGCTCGGGATCACAAGACCAGGAGGACGCCGTATCCCGGTACCGCAGGCTGATTCGCTCCTGCTCGAAGGCCGTTTATAGCTGTGGGAATTAATTTACGGGCACCCGAGTAAGCGCGCTTCTGCCTACGCGTCTTCCTTGACGAACGAGGAGGTGGTTGTGGAGTgaggggagtgtgtgtgtgtgtgagtaatgGAGCAGCAGAGACAGCGTTCACTCTCCACAGCAGGAGAATCACTGTATGTGGTCCTGGGAGttgataaaaacacagcaccagaagaaataaagaaatccTACAGAAAACTAGCTCTGAAGTTCCACCCTGACAAGAATCCTGACAACCCAGAAGCGGCCGACAAATTTAAAGAAATCAACAATGCTCACGCCATTCTGTCAGACCCCACCAAACGTAACATCTATGACAAATACGGATCTCTGGGCCTCTACGTGGCAGAACAGTTCGGAGAGGAGAATGTTAACACATACTTTGTATTGTCCAGCTGGTGGGCCAAGGCACTGTTTATATTCTGCGGTGTGGCCACAGGCTGTTATTTCTGCTGTTGTCTATGCTGCTGTTGTAACTGCTGCTGTGGGAAATGTAAACCTCATCCTCCTCGGTCAGATGAGCCGGAGTTCTATGTGTCTCCTGAAGACCTGGAAGCTCAGATGCAGTCTGATGAGAGAGGCCGTGCAGATGGCAGCAGCCCCATCGTGATGCAGCCATCTTCTGCCACAGAGACCACTCAGCTGACCGCAGACTCTCACCACACCAGCTACCGGACGGACGCCAGCTATTAaaccctctctcacacacatggGACCACCATGCCAGACAAGGTCACAGTGGGCAGTGGGTGATCCTGAGGAAAGAGGATGAGCAGTTAGTTAGTTGCAGTATCATTGGAAAACCTGAAACGCTCCACTGTACAGGGAAAGAagcaagtttattttaatttgccttTAACCTATTATCCCCAAACCTTCTGCTGTGttatacttacacacacacacacaggcattcTTACAGTGTCCATACAGTCTTCCTGCTATGATCCAAGCTTCATCTTGCCAACAGCTGCTGGTATGCACTGGTTATCAGACTGCGTTTGTCTATATAATacgttttttaataatttacagaTTTTAATTCAAGCATGAATTTGTTTCTACAACAACAGTACACAAGGaagtattttttatgctttagtgcAATGGATAATGAAGCTGCCTGGCATTACACTAGCTGactcggaaaaaaaaaaaatcattctagaGGTTGTCACACTTGTGCTACCATTCAAACATTCACAGTCACTaaatttattgattgatttttcagaaaggatgcattcatttgaaaaggGACAGTAGAGATTTAGGTTACAAATCATTTTAGGTCTATtttagatgccattcttttgagctttatgttcatatataagcagcacaactgttttcaacactgatgataataaatcaatatagcgggtcagcatattagaacgatttctgaaggattaagtgacactga

Function

GO: NA

KEGG:

id description
K09525 DNAJC5; DnaJ homolog subfamily C member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247879.1 lncRNA downstream 40474 10880591 ~ 10882652 (-) True LOC122329022
TU231736 lncRNA downstream 194878 10727964 ~ 10728248 (-) True G156478
TU231724 lncRNA downstream 220305 10702596 ~ 10702821 (-) True G156471
TU231719 lncRNA downstream 222902 10698597 ~ 10700224 (-) True G156469
TU231718 lncRNA downstream 226449 10696452 ~ 10696677 (-) True G156468
TU231828 lncRNA upstream 24728 10959635 ~ 10959846 (-) True G156538
TU232081 lncRNA upstream 98835 11033742 ~ 11035495 (-) True G156715
TU232086 lncRNA upstream 112238 11047145 ~ 11053295 (-) True G156719
TU232088 lncRNA upstream 115386 11050293 ~ 11057995 (-) True LOC122329093
XR_006247882.1 lncRNA upstream 116329 11051236 ~ 11057975 (-) False LOC122329093
XM_043224393.1 mRNA downstream 46 10915631 ~ 10923080 (-) False trim101
XM_043224392.1 mRNA downstream 46 10915631 ~ 10923080 (-) True trim101
XM_043224396.1 mRNA downstream 8923 10903880 ~ 10914203 (-) False tpd52l2b
XM_043224394.1 mRNA downstream 8929 10903880 ~ 10914197 (-) True tpd52l2b
XM_043224395.1 mRNA downstream 8930 10903880 ~ 10914196 (-) False tpd52l2b
XM_043224127.1 mRNA upstream 50478 10985385 ~ 10987412 (-) True bhlhe23
XM_043224233.1 mRNA upstream 127450 11062357 ~ 11068609 (-) True tfip11
XM_043224744.1 mRNA upstream 172034 11106941 ~ 11111646 (-) True pm20d1.2
XM_043224745.1 mRNA upstream 178102 11113009 ~ 11117428 (-) True pm20d1.1
XM_043224752.1 mRNA upstream 182775 11117682 ~ 11131520 (-) False lemd1
TU231697 other downstream 245077 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 555757 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 683853 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 691207 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 1089444 9832128 ~ 9833682 (-) False zgc:153284
TU232124 other upstream 165837 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 583103 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 806493 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 806493 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 807763 11742670 ~ 11742803 (-) True LOC122329333

Expression Profile