RNA id: XM_043224418.1


Basic Information

Item Value
RNA id XM_043224418.1
length 5336
RNA type mRNA
GC content 0.51
exon number 26
gene id usp19
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11941114 ~ 11961105 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agcgtgcgtgcgtgcgtgcgtgtgtttgtgtgtggagcAGGTTGTCGTGAGCGCCGTCTCTACccggtttgtttttgttctctaaCAAAGTGAGAATCACAGAGCAGCGGACGGCTCTCAAGCGGAGGACGGGCACCGTCGTCGCCTCTTTGTTTTGTTCACAGCAGCTCGGTTTCTGTTTTAACGTCACATAATGGGCCCCGGTTAGGATCATTTTGGAAATAAAGaagaattgatttttttagGGGGCGAGCTGATGCGGCTCAGGGGCGATCGGCGGCCCGCTGCCGTGTGTGAAGCCTGGGGCTGAATTTAAGCTGCGGTCGCCGCGGCTCCGCTGACGGAGGAAAGGACACGCCGCTGCGACGACTCGTTACGGAAGAACAACGACACACAtctCCCTCTGATTCTCTTCTGGGAGCGCTCTCACTTGAACCGCCGCCAAGATAGCTGGACCGGGCAGGAAACGGCACAGCTCAGATCCAGACCCCTGTGGAAGCAGCTCCAGCAGCGGGAGCGAGGTAGGAGACAGCCGACCCATTAGCAGCAAGTGGCTGAAGATGGCCAGCAGCAGTACAGGCCCCAGCGAATCGGGCCGGAGACGAGGTCAGAGAGGAACTGACGATACGGTCAGCACCAGTAAGAAGAAGCAGAAGGACAGAGCCAATCAGGAGAGCAAGGAGGCCAAGCGAGCCGCCTCAGCCACCAGCTCAGAGACTAGAAAAGATTTGTTTCTGGACTGGAAGCAGAATGCGTACGAGGTGATATTGAGGCTGAACTGTGAAGATGCCGGGGTGCTGAAAGTGGAAGATATTGATTATGCCTTTACTGATTTCGCCTGTCACATCCGCCTGCCGGATGGACGTGAATGGAGCTGTAATCTCCATGAAGAGATTGAAGCTTCCTGCAGTAAACTGCTTTATAAGGAGAAAACAAATGTTCTGCAGCTTGTCTTGCACAAGAAGATCCCCCTCAACACATGGCCCACCTTTGCTaacaagaaaaagacagaaaaagtgAACATCCTTAGAGAGAATGGCAGCAACCACCAGCAGACGACCACAGGGCAGTCTGAAAAATCTGCCGAAATCATTGAGAAAATGCCCACAGTGACCTCCGCAGAGCAGAAACGAGGTAAAACCGAACGAGGGATGAAACGAGGGATGAAAGGCAAACAGGTAGAGCTCACAGAGAGCACAGGTGTGAAGGTAGCTGAGACTAAATCAAGCAATAAAGCTGACCCGATCAATGAGCCCAGTGCAAAGCGTACGACGCGCCCCTCCAGAAACACAAAAGAGCCCCCAGTAGCTCCCACCTTGACGAAGGAGCCTCAATCCAAGCCAGCAGctaatggaaaaacacaaacattagcTGCGAGCAGTGGTGCCTCTTCAGCTAGCACTGCAAAAGACAACAGGGTTCAGATGCAGGTTAAAGGTCAAGGTTGCCAGGCATCACAGAGAGAAAAGGAGCTGGACAGGAGGCCAAAAAGCAATGATCAGGTTGAGGCAGATGAAAGGAAGACTGTTCCTTCAGTGTGTGAGCTGAAGGTGGTGCAAGAGGAGGCTTCTCCTCCAGTGAaaacacaaactgaaaaaataacatCTGATGAACAAGAAAACAGAACAGATGAAAAGAAGCCACAGGCTGATGCCCAGATCCCTAAAATGCTTCCATCCCAGGATTTGGCATCTGGGGAGTCTGTTTCAACAGCCTCTAAGAGAGAGGAGTCTCCACAAAAGAGCTGcacagaggagaagagagacaAGTCCAAGGAGGATCCACATGGAGGGAGCCACGAGGAAGACACAGAAGGTCCGGAGCCAATGGTGAACTTGAAGTTTGTGAAGAATGACTCATATGAGAAAGGGACAGACCTGATGGTTGTTAACGTCTACATGAAAGAAATCTGCCGGCAAACGTCCAGGGTGCTGTTCAGGGAACAAGACTTCACTCTTATCTTCCAGACAAATGATCCCAACTTTTTGCGCCTTCATCCGGATTGCGGACCAAACACTGTCTTTAAATGGCAGGTTAAACTCAGGAATCTAATTCAGCCAGATCAGTCCAGCTATGCCTTCACTCCGTCCCGTATCGACATCACCCTGAAGAAAAGACACAGTCAGCGCTGGGGAGGTCTGGAGGCACCTGCCACACAAGTGGGGGGCGCCAAGGTTGCCGTGCCCTCAAGCCCTTCCACGCTCGAAAAGAGCCAGCCAGGGAGCAGCCAGCATGCACTTCCTGCTAAAGAAGAGCCACGAGTGGGAGAAGAGAAAGCCAAGCCCTCTCGGGCCCCAGAGGACTTGGGTCTGGATGCCGTGGCACCTCGCTCCGTCTCCGAACACATGTCCCTCAAACAGGAACCAACTGTTGCTACGCCCAAGCCCACCTGCATGGTGCAGCCCATGACTCACACTCCTCCTGCAGGCAGTGAAAGAGCTGAAGAAGTGGAGGAGAAGAAAGTGTGTCTCCCTGGCTTCACTGGGTTGGTCAATCTGGGAAATACTTGCTTTATGAACAGCGTGATCCAGTCCCTCTCCAACACACGGGAACTCAGGGATTATTTCCATGACCGTGGGTTTGAATCAGAGATTAACTGTAATAATCCATTGGGCACCGGTGGACGGCTGGCCATTAGCTTTGCTGTGCTGCTTCGAGCATTGTGGAAGGGCACTCACCACGCATTTCAACCCTCCAAATTAAAGGCTATAGTTGCCAGTAAGGCCAGTCAGTTTACAGGCTATGCGCAGCATGATGCTCAGGAGTTCATGGCTTTTTTGCTGGATGGGCTACATGAAGACCTGAACCGCATCCAAAACAAACCGTACACAGAGACGGTTGACTCAGATGGCCGTCAGGATGAAGTTGTTGCAGAAGAGGCGTGGCAGAGGCATAAAATGAGGAACGATTCCTTTATTGTTGACCTCTTTCAGGGCCAGTACAAGTCCAAGCTGGTGTGTCCCGTGTGTTCTAAGgtTTCCATAACCTTTGACCCCTTCTTGTACTTGCCTGTCCCCCTACCTCAAAAGCAGAAGGTGCTGACTGTTTTCTACTTCGCTAAAGATCCCCACAAGAAACCAATCAAGTTTTTGGTCAGTGTGAGTAAAGACAGCTCGAGCACGGCTGAAGTACTGGAGTCAATATCTCGCAGTGTGAGGAACAAAGCAGAGAATCTGAGACTGACTGAGgTGGTGAAGAACAGGTTCAACAAAATTTTCTCACCATCTCAGACTTTAGACACGTTCACTCCCACTGACCTGCTCTTCTGCTTTGAAGTGTTGTCAAAAGATCTTGCCAAAGAGAGAGTGGTGCTGCTCAAGGTCCAACAGAGACCTCAGGTTCCAAGCATCTCGATCACAAAGTGCGCTGGCTGCATGAAGCTACCTGCCCCTGACGACGAGAAGCTCAAGCGCTGTACTCGCTGTTACCGCGTGGGCTACTGCAATCAGGCCTGCCAGAAGAACCACTGGCCCAATCACAAGACCACGTGCCGGCCCAATGAGGAGAATATTGGACTGCCGTTTCTAATTAGTGTGCCAGAGTCTCGGCTGACTTACACCCGTCTGACACAGCTTCTGGAAGGCTACTCTAGGTACTCTGTCAATGTGTTCCAGCCACCTTTCCAGTCAGGTCGGACGTCTCCAGAGGCAAGCCGTGTTGACCTGACCCCCATGGCAAGCAGTGTCTCAGAGTGTCAGGAGCAAGAGGGGGAGCCATCACCTGCAGGAGAAGCAGAAAGCCAGGCCGAGCAGGGTGACTCTGGGACAACACCCCAATCAGAGACCCCATCGGTGATCTCCGCAGCAGGTGGAGACACAGTCTCCAGGGACTCGGGCTGCTGTGAGCTCGCCACAAGCTCCCAAGATTCTTTGGTGGAAAAAGAAACATCATGTGAAAAGGCTGTTAAACCAGAAGCTGTAGTGACTGGGTATCAGCAGCCGTCTGATTCAGCGCCTGGAAGTGCGTCTCAGTTCTACATCACAGTTCTGGACTCAAGCCAAAAAGAGGACAGAAAACTTGAGGATAAAGGTGATGCAGTGCTAGAGCTGCCTGATGACTGCACGTTGGAGCTGGTGTGGAAGAACAACGAGAAGCACAAGGAATATGTGCTGGTGCGCTCTAAAGAGCTGGAGTTTGATGAGGACCCTGGCTCTGCTTCAGAGACGTCCAGGGCAGGACACTTCACCTTGGAGCAGTGCCTGAACCTCTTCACCAAACCTGAGGTGCTAGCCCCTGAAGAGGCATGGTACTGTCCTAAGTGTCAGCAGCACAGAGAAGCATCTAAACAGCTGCTGCTTTGGCGTCTTCCCAATGTGCTCATCATTCAGCTCAAGCGCTTCTCGTTTAGGAGCTTCATATGGAGGGACAAGATTAATGATATGGTTGATTTCCCGGTCAGGAACTTGGACCTGAGTAAGTTCTGTATTGGTCATAAGGGTGACATCCAGCAGCCCCCCATTTATGATCTCTACGCTGTGATCAACCATTATGGCGGCATGATCGGAGGACACTACACGGCCTACGCTCGTCTTCCCAGCGACAAGAACAGCCAGCGCAGCGATGTCGGCTGGCGTTTGTTTGATGACAGCACAGTAACAACGGTGGAAGAGAGTCAGGTGGTTACGCGTTACGCCTACGTGCTGTTCTACCGCCGCAGGAACTCTCCGGTAGAGAGGCCGTCTCACTTACTGGGGCCCCTTGGCGCCGATTCCTCTGCTGCAACCGGCGGCGCTGCCAGTCAGGCGTCTCTGATATGGCAGGAActggaggaggatgaggaggggCAGCGAGAGGCCTCTTTTCGGAGCCTGTTCCGCCCCGGTCTGCGTGGAAGAAGAACCAGGACGAGGccggaggaagaagaggagggcAGGGGAGGGCATTCTCATCACAGACGAGAGCGCATCTCAGATTACTCTGACAGCGAGCGTCTGAGATATTTCATCATGGGCACTGTGGCGGCAATCCTAGCCTTGCTGTTCAACCTCATCTATCCTTTGTTATACTGGTCCAACTGGGTTTAATTTACTAGTGACTACAGCTGCAGACCCCACTTATTCATCCTTCTTGTTTTGGCAACTTCAATGTAATTTAGCTTGGGAGACACACAGCCTGAAATATATCCAAGCTAGTcaggattgttttgtttttgttgtgttacAATATTGTCCAGAATGTTTCATAAACACTCAGGAAAAATGTCTTGCATTAACATAAATGTTAGGAGGGCACCTCCTTTTTAGCCAGActtgagattttattttagctgaTCAACGACCAATTAATAAATCGCAACGTGGATATATtgggatgcaaaaaaaaaaaaatccaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232457 lncRNA downstream 92329 11793603 ~ 11851710 (-) True G156972
TU232440 lncRNA downstream 93457 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA downstream 161673 11781567 ~ 11782366 (-) True G156971
TU232436 lncRNA downstream 181016 11762440 ~ 11763023 (-) True G156962
TU232213 lncRNA downstream 403994 11539623 ~ 11540045 (-) True G156812
TU232469 lncRNA upstream 94141 12055246 ~ 12061368 (-) True G156978
TU232458 lncRNA upstream 100342 12061447 ~ 12064715 (-) True G156973
TU232460 lncRNA upstream 100342 12061447 ~ 12064715 (-) False G156973
TU232520 lncRNA upstream 137862 12098967 ~ 12099726 (-) True G157012
TU232550 lncRNA upstream 190255 12151360 ~ 12156300 (-) True G157035
XM_043224064.1 mRNA downstream 3695 11936836 ~ 11940344 (-) True si:dkey-32e6.3
XM_043224067.1 mRNA downstream 7428 11934327 ~ 11936611 (-) False lrrc23
XM_043224066.1 mRNA downstream 7428 11934327 ~ 11936611 (-) True lrrc23
XM_043224773.1 mRNA downstream 10926 11924945 ~ 11933113 (-) True tktb
XM_043224347.1 mRNA downstream 24533 11906699 ~ 11919506 (-) True si:dkey-32e6.6
XM_043224189.1 mRNA upstream 754 11961859 ~ 11994891 (-) True lamb2
XM_043224188.1 mRNA upstream 754 11961859 ~ 11994890 (-) False lamb2
XM_043224191.1 mRNA upstream 754 11961859 ~ 11994889 (-) False lamb2
XM_043224186.1 mRNA upstream 34865 11995970 ~ 12030230 (-) False lamb2l
XM_043224187.1 mRNA upstream 34865 11995970 ~ 12025111 (-) True lamb2l
TU232479 other downstream 19389 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 142407 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 197419 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 198644 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 201236 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 1179973 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1319151 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2365861 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2619989 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 3386312 15347417 ~ 15474377 (-) False magi3a

Expression Profile