RNA id: XM_043224423.1


Basic Information

Item Value
RNA id XM_043224423.1
length 4084
RNA type mRNA
GC content 0.45
exon number 15
gene id calcoco1a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18437059 ~ 18451886 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttgagtATCTGAGCCATTATTCAGAACCAGCAATGGAACTTCATTTCCCACAGTGCACCGAGACCTCCAAAGCACCCATGcttctgtttttgttattgttgtgaGAGGTTCGTGGCACAGCTCATCTCGGCGAATGTGTCAGTGTAAATTGCACTTGTCATCAGTCTCATAcatgttttctcttttatcACCGAACATCGTTTTCCAAGAGGACATTGTTCTGATTATCTAAGCTAAATCGGGTGCATCACTATACTGTTGCCATGGAGAAGACATTAGGGGTGGAGTTTCGCAATGTTGGAAGTTGTTACTTTCCTCAGAGCAGAGTGGACTGCCACTACACCATCAACCCACAGCACACATGGGCCAGTAACGACTGGATCGGACTATTTAAAGTTGGCTGGTCATCAGTCAAGGATTACCATACATTTGTCTGGGCAGTAGCTCCATCCAGCTACAAAGAGGGTGCCTCTGTCAACTGCTGGGTTAATTTCCAAGCTTCCTACCTGCCAGGGCCTAGTGCCCAACAGTATCAGTTTGTGTATGTGGATGGAAGGGGAGAGGTTTGTTCTCGCAGCACTGCTTTTACCTTCTCCGCCCCAAAGCCCCTCGAGGAGCTGGTGACTCTGGAGGAGGAGGGTCAGGGCGAGGAAGTGGGCGAGGATATGTTGCTGGTCATCCCCAGAGCCCAGCTGCTGCAGAGTCGTCTCCAGGAGTGTTTGAAGGAGCGTGCTGAGCTGCTCCAGGCTCTGGAAGCAGCAGACCAGAACGTGGAGAGGGAGAAAGGCAGGAGAGAGCGAGACAGAAGCTCCTGGGAGCAGAGCCGCAAGGACCTGGAAAGGAAGATCAGCGAGCTGAAGGAGGAAGTGAGAGAATATAGAGAGAAAGTAGAGGAGATGAAGAAGAAGCAGAAGGAAGTTGAGGATTTAGGTGAAGCCCTGACAGAGGAGAAGAGAGCCCTGCTGTCTCAAAAAGAAGCTAATGAGCAGCGAATCAGAGAGCTAGAGGAGGACATTAAAGTACTGACCCAGAGAGGCTTGGAGAGAGAGACTGACCTAGAAAGGATGAGGGAACGGGCCAAGAAAGCAGCGGCTCAAAAGaaggaggatgaggatgagcaCAAAAACCTGAAGATAAAGATGGAACAAACAGAGAAGGAGCTGCACAGTCTGTCAGCAGAGTTCCAGAGTCTGAGAAGCTCACTGGCCCAGAGAGATACACATGCCCTACAGCTTCGAGACACCATCACCAccctcacacacaaactcaacAGCGCTCACAGGAAGGAGGCAGCCAATGAGGTGGCTTTGAGTGAACTCCGGAGTGTTCAAGAGCGTCTGAACGTGAGTGAACGCTGTGTGGAGACTCTGAGGGGAGAGCTGAGAGACATGGTCGCTCAGAGGGACACCGCACATGCCGAGCTTCATCAGGCCCGTCTGCAGGCAGCACAGCTCACACTTCAGCTGGCAGATGCCAGTCTGGCTCTGAGAGAGGGCAGGGCCAACTGGGCACAGGAGAAGGAGAACCTGCAGCAGAATGCTGAGTTGGACAAAGTGCGTCTGGAACGCCTAAATGACGAGATCCAGCAGAAGGAGGAGATGTTGCAAGCGGCgaggatggagagagagaaagcagtgGTGGAGCTGGGACGAGAGAAAGACTGCAATCGGGTTCAGCTAAGCGAGACTCGTCGTGAGCTGCAAGAACTGAAGGCGAGTCTCAGAGTGGCTCAGAAAGAGAAGGAGCAGCTGCAGACAGAAATACAGgaagTGATGGAGTACAGCCGTCAGCTGGAGAGAAGGCTGGAGGTGCTGAGCGATTCTAAATGGAGTGAGACGGCGCTGCTGCAGAGCAGTCGTGCTGAAAGCCCACTGCTGTCTGATTCTGAGGACGAGAACCCAGAGGCTTTGCAGGATGCTCACTCTTCTGGGCCTCTGAACCATTACAGTCTGTGCGAACAGCCCCAGGCCGACCTGCTGCTCCCGGCCACCCCGCCGCCGTCGCCCAGACACCCCTCAGGGATGGACGCAGTGGTCATCAGCCAACCTGCACCTCTTTCATCTCCACATCAGCCcagcgctcacacacacgctcacagcTCTGAGTCGGAGGAAGAGTATGAGGCCACTCTGTCAAGAGGGCACAGCTCTGGAGAGGAGATGGCTCTTCTCCTGCCTGACAACAGAGACACTACCCTCGGAGATCTGGCAGAGAGCCCCTTGTGGTGAGAGGCAGAACCGCAGGAACCCGAGGGCCAGCGCAGCGTGGACTGCTTCGCGCCAGTGCAACACGTGTTATGAGTTTTGTATTTAGAAGCATTTGCGCTTTATATCACATTGACATgagtatttaaatatgcaatttgcTTTACACTTTATATGCACTTAGAATATGCGTAAGCTATTAGACCTCTTTATGTCTCACGCGGTTTTAAGGCAACTTGCACGGATGTGTTATTTTACACATATCAACCGACAAGCAGAAGGCACCTGCAAAGAGCGGATCGAGAGAAAGGTTGTGTTTGAGGCGGAAGAAgtaaagtgcatttttgtatgtttgtgtgtgttagggTTGTTTTTCCCAATCTTGATTTTCTTGTGTTCTGTCGTAAGACTTGTACTGAAATAACAATTATCATTAATCTGCATCAGCAATAATGTAAAGCACAATATCGGTGAAATCTTTTCAGGTTTTGGGATTTAGTTTGGGTGCTCTTTATTTCGTGGGTATTGTGGTAGAAGCATTTTAAACTTCGTTTGTTTGAAAGTTCACACATTAAATGATTGATTACGTGCAATGGGATACACCAGCGACTTGTTTAAATGTAAGAGCGAAGAGTGGCACTTTAGATTCCTTTCAGGACGTTTACTCTCATCCTCATGTAACATTCATATGTGGAAGATCTTCTTTGGAGGGAATCCACTTTAGAATGGAGGCTGAGGGAATTATGAAGTttaattagtcacttttaaTTCCTCTAAAATTTATATTTGGTGCTTTATTGTAGTTTCATGCATTATACTGAAACACTGTTTtacattaatgataaaattattatttgtatgcgAAACGTACTAAGACGGTTTAACTACTTAATGTTCCTCTTGAGGTTGGCAATACATTAGGAAGTTTTTGCAGTACCGCGAGAAGGACTTTTAATTTTAAGGCATGAAttgaactgctttaaattatgCCTCACGAAATTCAAGGAATCTCAtctttaattcagtttaatgtGTGATGGCTTAATGGTGCGTCACGTGGATCATGTGGAGAACATTATTTGGCTGTGTTTAAGCTCATTACCTGAGgaaaaattcataatttcagAACGccatgattacattttaataacattcaCAGGgagaatattttaatgcatatattaaaaagtaaaataatgaagGCGAATATTATGAAAAGGTAtcgtatattaaaaaaagtacaagttcttttttttctttgcaatgTTTGAAACATTTTCCTTTTGGGCTGACTGTAAATgcagaacttttattttgtctggTTCATTAGTTCTTGCTGTTTACTGTAGGGTCATGTTTAAATAGCTCCTATATGTTATTTGCCTTTTATACAACATGTCATAATCTGTATTGACTTTAAAAGTGATGTAACCATTACACCTCACTGAAACAGGCTTTTGCGCTCACTCTGCATCCATCAGTctactgtatttgtattgtaCGCTTGACCAGGTTTTACTTTGATAGTTTTAAAGCTGTATATTGAAAACAATTCattctcatttttaaaagatacacTTCACCTGAACCTGAAAGcccagtttgaaaaaaaaaaaaaaaaaaagcttcctgTTACCCACTTTACTACATCCAGAAACCTGTTTATGGCAGGGCATATGTTAGGATAGGTCCTAAGTAATGGTTGTCCATTTTTCTAAAATTCAGTCTAAAGGTCATTTCAAGGCAATAAAACtagagatttgttttttttttttttgtgcatttattccTTCTTTCACTTATCTTATTTGTTTGTAGGTTATGCGGTTCTGTTCGGGGTGTGGGATgggtttaattaataaaaaaaatgtaatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235174 lncRNA upstream 80525 18296006 ~ 18356534 (+) True G158830
TU235172 lncRNA upstream 163567 18273226 ~ 18273492 (+) True G158828
TU235171 lncRNA upstream 164216 18272329 ~ 18272843 (+) True G158827
XR_006247883.1 lncRNA upstream 165132 18250591 ~ 18271927 (+) True LOC122329094
TU235170 lncRNA upstream 165155 18271662 ~ 18271904 (+) False LOC122329094
TU235245 lncRNA downstream 93024 18544910 ~ 18545490 (+) True G158880
TU235227 lncRNA downstream 113390 18565276 ~ 18569950 (+) True G158866
TU235422 lncRNA downstream 149016 18600902 ~ 18601176 (+) True G159002
XR_006247880.1 lncRNA downstream 169940 18621826 ~ 18623979 (+) True LOC122329080
TU235436 lncRNA downstream 189608 18641494 ~ 18641890 (+) False fam110c
XM_043224587.1 mRNA upstream 193356 18235688 ~ 18243703 (+) True cbx5
XM_043224574.1 mRNA upstream 205169 18215096 ~ 18231890 (+) False nfe2
XM_043224575.1 mRNA upstream 205169 18226902 ~ 18231890 (+) False nfe2
XM_043224573.1 mRNA upstream 205169 18226908 ~ 18231890 (+) False nfe2
XM_043224576.1 mRNA upstream 205169 18228022 ~ 18231890 (+) True nfe2
XM_043225552.1 mRNA downstream 64718 18516604 ~ 18531502 (+) True nr1d4a
XM_043225345.1 mRNA downstream 81031 18532917 ~ 18535094 (+) False mfsd5
XM_043225344.1 mRNA downstream 81033 18532919 ~ 18535094 (+) True mfsd5
XM_043224445.1 mRNA downstream 95343 18547229 ~ 18563142 (+) True jph2
XM_043224451.1 mRNA downstream 123312 18575198 ~ 18578740 (+) True LOC122328644
TU235116 other upstream 378142 18057114 ~ 18058917 (+) True G158789
TU234842 other upstream 1013104 17423134 ~ 17423955 (+) False si:ch211-148l7.4
TU234757 other upstream 1265220 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 1354404 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 1354500 17082205 ~ 17082559 (+) False G158524
TU235541 other downstream 320064 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 348998 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile