RNA id: XM_043224425.1


Basic Information

Item Value
RNA id XM_043224425.1
length 2980
RNA type mRNA
GC content 0.49
exon number 17
gene id ddx23
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4914490 ~ 4920882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTTAGCTGTGTTTTGATGATTTGACTAAAATGTGacttatttttttcctaaacaAATGCTTTTCCCGTGCAATAAGTCTACACAATAATCTGTTAGATCCTGATTGGTAAATGTCGCACGGTTTTGgggaaagaaaaatattgaaatATGGCGGGTGACTCATCTGATAAGAAGGACCTGGACACCGCGGGGAAGGAGCGGGAGTCTCGTAAGCGCAGTCGTTCTCGCTCCAGGGATCGGGATCGGGATCGGAAAGGGTCTCCCGGCAGAGAACGCAAACGGCACCGATCCCGTGAACGCAAGCGCTCCCGCAGCAGATCCAAATCTCCCGAGCGAGACCGTCGTCtaaaagataaagagagagacagagacagagacaaggACAGAGACAGGAGCCgcaaagacagagaaagagacagggaCAGACGGGACAAGGACCGGTCTAAGAAATCAAGgagcACTTCTCCTAAATCCAAGGATTTGAAAATAAAGAGGGAGAAGGATTtgaaaaaagaggaagaggaggaagatgagaagaagaaagagaagGTGCAGCCTCTTTCTCTTGAAGAACTGCTTGCTAAAAAGAAAGCGGAAGAAGAGGCAGAATCTAAGcCCAAGTTCTTGTCTAAAGCAGAGCGAGAAGCTGAGGCCATCAAACGCAGGGAGCTGATTGCAGAGGAGCGCCGCAGACAGCTGGACGAGGAAAGGAAGAAACGAAGAGTATTTCAGGACATTGGCAGGAAGATGCTAGAGGATCCTCAGGAGAGAGAACGGCGGGAAAGAAGGGAGCGGATGGAAAGAGAGAACAATGGCAATGATGAGGATGATGGGCGCCAGAAAAttagagaagaaaaagacaaaggaaAAGAACTGCAGGCCATAAAGGAGCGTTATCTTGGTGGTATGAAGAAACGGAGGCGTACCCGCCATCTGAATGACAGGAAGTTCGTCTTTGAGTGGGATGCATCTGAAGACACGTCAATCGACTACAATCCAATCTATAAAGAAAAGCATCAGGTTCAGCTGTATGGCCGAGGCTTCATCGCCGGCATCGACCTCAAGCAGCAGAAGAGAGATCAGTCCCGATTCTACGGAGACCTGATGGAGAAGAGAAGGACTCTTGAAGAGAAGGAGCAAGAGGAACAGAGGCTGAAGAAGGTCCGGAAGAAGGAGGCCAAGCAGCGCTGGGACGACCGGCACTGGTCTCAGAAGAAGCTTGATGagatgacagacagagactGGAGAATCTTCAGAGAGGACTACAGCATCACGACCAAAGGAGGAAAGATCCCCAACCCCATCCGCAACTGGAAGGAGTATTCCCTGCCGCCACACATTCTGGAGGTCATCGAAAAGTGCGGCTATAAGgATCCCACGCCTATCCAGAGGCAGGCCATTCCTATTGGTTTACAGAACCGTGACATCATCGGTGTGGCCGAGACTGGTAGTGGTAAAACCGCCGCCTTCCTCATTCCTTTATTGGTCTGGATCACCACTCTACCTAAGATTGACAGGATCGAGGACTCCGATCAGGGACCGTATGCCATCATTCTGGCCCCCACTCGTGAGCTGGCACAGCAGATAGAGGAGGAGACGATTAAATTTGGCAAACCGCTGGGGATCCGGACAGTGGCTGTGATCGGTGGAATATCCAGAGAGGATCAAGGGTTCAAACTCAGGATGGGTTGTGAGATTGTTATAGCCACACCCGGTCGTTTGATCGACGTCTTGGAAAACCGATACCTCGTCCTGAGCAGATGCACATATGTGGTACTGGATGAAGCTGACAGAATGATTGACATGGGCTTTGAACCTGACGTCCAGAAGATTCTGGAGTACATTCCTGTGACCAATCAGAAGCCAGACACGGATGATGCGGAGGACCCGGAAAAAATGATGCAGAACTTTGAGTCAggcaaacacaaatacagacaGaCGGTCATGTTTACAGCCACTATGCCTCCTGCAGTGGAGCGTTTGGCCAGAAGTTACCTCCGTCGGCCTGCGGTGGTGTACATCGGTTCTGCAGGCAAACCTCACGAGAGGGTGGAGCAGAAGGTCATCCTCATGTCTGAGGGTGAaaagagGAAGAAGCTGCTGGATGTTTTGGCAAGTGGCTTCGAGCCGCCCATCATCATTTTTGTTAACCAGAAGAAGGGTTGTGACGTGCTGGCTAAGTCTTTGGAGAAGATCGGATATAATGCTTGTACACTCCATGGCGGTAAAGGTCAGGAACAGAGAGAGTTTGCTCTGTCCAACCTGAAGGCGGGAGCGAAGGACATCCTGGTGGCCACAGACGTGGCGGGCAGAGGTATCGACATCCAGGACGTCTCCATGGTCATCAACTATGACATGGCCAAGAACATCGAGGATTATATCCATCGTATTGGCCGAACGGGTCGTGCTGGAAAGAGTGGTGTGGCCATGACTTTCCTGACCAAAGAAGACTCTTCTGTTTTCTACGACCTGAAACAGGCCATCTTAGAAAGCCCCGTGTCCACCTGCCCTCCGGAGCTGGCCAATCACCCGGACGCCCAGCACAAACCCGGCACCATCCTCACCaagaagaggagagaggagacCATCTTTGCCTGAGCCAGACCATTTACACATGCTGTTTTGTTTCCTGTTGTACATCTTGTAAGTGTGCTGTGTTTTACCACCAGATTATTTGCAACCAAGTTCATGAGAGACCACCAGTAATCCAGAGGATCGGTTTTCTGCCAGATAAACCAATGACAAAGTGTAGAAATCTGTAAGAAAGCTGTAGTAGAGAGAAGGCAATACTTGACATCCTAAGTTGTTCGGCTAGAGCAGCAAacatctttcctttttttttttacacattacatgtaattgtgtttttaaatggtgtaaaaaatgctaattcatgaATGCATCTGTAGATACTCCATGTCAGTCAAAGGATAGGTAAAACTCTTCACTCTGTGGATAAATAAAGTCCTTTAGACTGA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12858 DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229707 lncRNA downstream 503 4908918 ~ 4913987 (-) True G155112
TU229682 lncRNA downstream 183350 4727854 ~ 4731140 (-) True G155096
TU229678 lncRNA downstream 201408 4712689 ~ 4713082 (-) True G155093
TU229677 lncRNA downstream 204153 4707665 ~ 4710337 (-) True G155092
TU229643 lncRNA downstream 234211 4679983 ~ 4680279 (-) True G155085
TU229766 lncRNA upstream 164634 5085142 ~ 5087946 (-) False G155153
TU229765 lncRNA upstream 166840 5087348 ~ 5089097 (-) True G155153
TU229769 lncRNA upstream 176024 5096532 ~ 5097130 (-) True G155156
TU229770 lncRNA upstream 191336 5111844 ~ 5112964 (-) True G155157
XR_006247896.1 lncRNA upstream 510038 5430546 ~ 5431524 (-) True LOC122329300
XM_043224152.1 mRNA downstream 37462 4835981 ~ 4877028 (-) False adcy6a
XM_043224151.1 mRNA downstream 37462 4835981 ~ 4877028 (-) True adcy6a
XM_043225379.1 mRNA downstream 80185 4827478 ~ 4834305 (-) True LOC122329181
XM_043224155.1 mRNA downstream 87371 4815822 ~ 4827119 (-) False g6pd
XM_043225309.1 mRNA upstream 7521 4928029 ~ 4977122 (-) True nkain4
XM_043225310.1 mRNA upstream 7521 4928029 ~ 4977118 (-) False nkain4
XM_043224039.1 mRNA upstream 155845 5076353 ~ 5082995 (-) True gss
XM_043224046.1 mRNA upstream 173325 5093833 ~ 5110924 (-) False sla2b
XM_043224045.1 mRNA upstream 173325 5093833 ~ 5110447 (-) True sla2b
TU229703 other downstream 79970 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 719492 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 719494 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 1008598 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1468526 3436779 ~ 3445964 (-) False LOC122328836
TU229887 other upstream 533909 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 557406 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 1810343 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1846100 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1853070 6773578 ~ 6822978 (-) False rps21

Expression Profile