RNA id: XM_043224432.1


Basic Information

Item Value
RNA id XM_043224432.1
length 1861
RNA type mRNA
GC content 0.50
exon number 9
gene id etv7
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3682092 ~ 3688198 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGTGCTCGCGAGGCTCCTGTGCGCGCAGATCCGCTCTCTTTCGTTTTCGTTTCCCGGAAGGATTCTTAATAGCGCGGCGACTCGCATAAGAAAAGACGAACTCGGCTTCGCGGGGCTTCGCGCGACACCACACGCCGCATTTGGTGCGCATGTCGATCGGCTATTGATACGGCACTCGGGCATTAATACCGGGGCGAATATTTAGGAGTTTGTTAGTCTTGAAGGTTACAGAACATGAGTGACGCCTCCTCACCGCCACCTTTGATAAAGCTACACAAGAGTTGTAATGTGAACGAACCCCCGGTTTGTTCTGCGGTTCTGCGCGACCCTCAAAGCGACCCTCCCTCGGGGTACGAGACGGTGCCTGATGAGCTCTGCAAGCTACCTGGAAGACTGCGGATCAATCCGTCTTTGTGGAACAAGGAGGACGTCAATCTCTGGCTGCGCTGGGCTCAGAGGGAATATTCTCTGCGACGCGCCGACCACCAAAAATTTGAGATGAACGGAAAGGCGCTTTGTCTTCTGACCAAAGAGGACTTCCGTCTCCGCTGTCCCAGCTCTGGCGATGTTCTGTACGAGCTCCTTCAACATGTGAAGCAGCAGAGGAGATGTGCCATCTTCAGTCCGCTGTCCGGCTCACAGCAGACGCCCGACTCCCACGGGACAGTAAATAGGAACTCCTGGGTGCTAACAGCCGGATGCAGCGCAGATCCGAGCCAGGAGAAGAAACCTGCTGAGCCTGAGCGTTCACGTGACATGCACAGAGAGCTTCACTCTCccaaagaaaaacatcaacagACGTCTCCAGACGTCTCCAGACAAGCAGTAAACGTCCACTGCACAGACGAGCCTCTCAACCTCTCCAGTAAACCCACGAGACCCTCAAACAGCGCGCAAACCTCGGAGGCCAACGGAAAGATTGCAGACTGCAAACTCTTATGGGACTATGTGTACCAGCTGCTGTCGGACAGCAGGTATGAGGCCTTCATTCGCTGGGAGGATCGGGACGCCATGATCTTCAGAGTGGTGGATCCCAACGGACTCGCACGACTCTGGGGAAACCACAAAAACAGGGCCAACATGACCTATGAGAAAATGTCCAGAGCATTACGCCATTACTACAAGCTCAACATTATCAAGAAGGAGACAGGCCAGAGGCTGCTCTTCCGGTTTCTGAAGACTCCCGAGGAAATCATGCAAGGCAGGTCAGACCGCACAGAAGTGTCCGAGTCTCCTGACAGCCCTGCATCCCCCGACTACCGAGAAGAGGCTCTGGAAGTATCTCCCGTATCGACTCCTACTACCATGAGCCCCAGCTCCGATCACAACTTCAGCATATCACCGATCCCCTAACATTCCCTGCCTCGTTCTGATCCAGGATCAGCCGTAGCGGTTCATAACTGAATGAGAAACCCAGAGCTGATCTTCCGTCGATGTGAAATGCCATCAGCAGCACCACAGATGGCTGGTTTCTCCGGAAACGTCCCACAGTCTCAGACCACACGGTTTTGACTCAGGGTAGCAGTGTCCAGTTGTTTGCTGTTGGTCTGCGTTAAAAGCTAAGCGACACTAATTTCTCAACACAATTCTGATTGATTCTCATAGTTGATAGGAACAAGAACTTTCTCTCAGGTTGTAAAACTGtgcaatgttatttttttacagatttgcGAACTGCACTTCATTACTGTGTAATAACATCACATTGTCGATTTATACAATTCATCAAATATCATTAATAACCTACAGAATTAAATCATTAACTGCATGAAGGGAGTTGACAAGTAGGACGCTTATGAGCGGTTTTTAGGTCGAAATGTATGAATTtgatatttgattaaaattttattttatcattt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K03211 ETV6_7, yan; ETS translocation variant 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229056 lncRNA downstream 8511 3672679 ~ 3673581 (-) True G154684
TU229040 lncRNA downstream 25549 3656288 ~ 3656543 (-) True G154672
TU229039 lncRNA downstream 26496 3655286 ~ 3655596 (-) True G154671
TU229031 lncRNA downstream 48759 3632359 ~ 3633333 (-) True G154663
TU228997 lncRNA downstream 163975 3502275 ~ 3518117 (-) False tspan2b
TU229059 lncRNA upstream 4739 3692937 ~ 3693265 (-) True G154687
TU229080 lncRNA upstream 109278 3797476 ~ 3798675 (-) True G154701
TU229081 lncRNA upstream 109792 3797990 ~ 3798969 (-) False G154701
TU229083 lncRNA upstream 118345 3806543 ~ 3806901 (-) True G154703
TU229092 lncRNA upstream 138629 3826827 ~ 3827190 (-) True G154708
XM_043224437.1 mRNA downstream 133 3674465 ~ 3681959 (-) True pnpla1
XM_043224198.1 mRNA downstream 127579 3529533 ~ 3554513 (-) True ngfa
XM_043225298.1 mRNA downstream 163950 3502265 ~ 3518142 (-) True tspan2b
XM_043224732.1 mRNA downstream 208638 3447559 ~ 3473454 (-) False uhrf1bp1
XM_043225547.1 mRNA upstream 13408 3701606 ~ 3770863 (-) True LOC122329314
XM_043224947.1 mRNA upstream 193822 3882020 ~ 3893676 (-) False tnnt2a
XM_043224946.1 mRNA upstream 193822 3882020 ~ 3893676 (-) True tnnt2a
XM_043225533.1 mRNA upstream 206768 3894966 ~ 3905892 (-) False lad1
XM_043225532.1 mRNA upstream 206768 3894966 ~ 3905892 (-) True lad1
XR_006247838.1 other downstream 236128 3436779 ~ 3445964 (-) False LOC122328836
TU228731 other downstream 724820 2925048 ~ 2957272 (-) True G154446
XR_006247897.1 other upstream 206768 3894966 ~ 3905892 (-) False lad1
XR_006247892.1 other upstream 485716 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 485716 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 1143620 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 1766219 5454417 ~ 5455047 (-) True G155227

Expression Profile