RNA id: XM_043224456.1


Basic Information

Item Value
RNA id XM_043224456.1
length 1661
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC122328648
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8334954 ~ 8341779 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGACTTTAGGTTTAAACACATGCAAATTAGAGTGAATGCAGAGTCTGCTGCTTTCTACAGGTAAGGTGGAACACATTCGGACTGACAGAAGGCTGCAGATGCTCTTATCCACTCAGAGAAACTTGATGAACAAAGAGCTACGGCTTTACATTGGAGTAAACACCTTTGACTACCTGGGCAGTATCCTCAGCTATATAGTGATTGCGATCCCCATTTTTGCTGGGGATTATGACGGCCTGACACCTGGAGAACTGAGTGCTCTTGTCAGCAAGAATGCTTTCGTCTGCATATATTTGATAAACTGCTTCACCCAGCTCATAGATCTCTCGACCACTGTGTCTGATGTTGCTGGATACACGCATCGGATTGGAGAACTGCAGGAAGTAATGGCAGACATTGACAAGAAACAGTGTGACCAGGATCAGTATGAACCACTTTCAAAGGATGAACCTTACAGTGGTCAGGAGCTTCACAATGTCCCAGCAGACACGGCGTTTGTGCTGGATCGTCTCTCTTATAAATCACCCGTCTCAGAAGAGCTGCTTGTGAAAGATCTGACCCTTAAGATCAGTCAAGGAACGCACATGCTCGTGGTTGGAAACACGGGAACAGGGAAGACCTCACTGCTCCGGGTCCTCAACGATTTGTGGGAACCATGCAATGGTTCTGTGGAGATGACCACATGTTTTGGACCGAGGGGTGTGCTTTTCCTGCCACAGAGAGCATATCTTACTGATGGCACTCTCAGAGAGCAGGTTATCTATCCATTAAAGGATATATATCCATCCTCAGGATCTATAGATGATGAACGAATACTAAAATACCTGGAACTTGTTGGTTTGTCGAATCTTCTGACCAGAATAGGAGGATTGGATACAAAAGTAGATTGGAACTGGTATGATGTTTTATCGCCGGGAGAAATGCAGAGGCTTTGTTTTGCTAGACTGTTTTACCTGCAGCCCAAATATGCAGTACTGGATGAGGCCACTAGCGCTCTGACGGAGGAGGCCGAGGGTCAGCTCTATAAGGCCTGTAAACAGCTGGGAATGACCCTCATCAGTCTGGGTCACCGTAGCACTCTGGAAAAGCATCATGATGTCATGCTGCGACTGCGCGGAGGTGGCCAATGGGAGCTCACCAAACTCAAAGAAGCTTGAATCTTCAAACCTATAATGAGAAAATATTGGCCTGTTTTGTAGTTATGGGTGCATTCAATCTTGAGACTGAGAAATCTTGACAGTACACTGCGATTTACTGAAGTTTTTGATACACTAATGCAGTCtcaaattactttttcatttagcaatatgtttttattatgcaagTATATGCTGCTTTATTCAAACTGTTCCTTgccaaatatatttgtaaaaaaaaaaagggatttttaCAATGAAGGACATTAAAGAGTATTTCAAGAATCATTTTGGATGAAGTACCTATAGAacaataatatattcaaatatatattttgtaaatatgaaatattttattaacatggCTGATTTTAAACTTATAACATCCAAGCAAATGTTACTGGTCAAAGAAACGTTTTATGATAAGATGTTTACTCAAGTGTTTGGCTGCACATTATTCtggaaggaaaataaaaaggcatGTAATTTGTTTGCCTGGCCAGTAGAGGGCCAACATTTTCCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247805.1 lncRNA upstream 260470 8054337 ~ 8076320 (+) True LOC122328539
TU230593 lncRNA upstream 299527 8036903 ~ 8037263 (+) True G155704
TU230588 lncRNA upstream 351204 7984095 ~ 7985586 (+) True G155701
TU230519 lncRNA upstream 397034 7938606 ~ 7939756 (+) True G155660
TU230509 lncRNA upstream 404734 7929733 ~ 7932056 (+) True G155655
TU230693 lncRNA downstream 66387 8408166 ~ 8410045 (+) True G155756
TU230773 lncRNA downstream 271635 8613414 ~ 8617005 (+) True G155813
TU230784 lncRNA downstream 282351 8624130 ~ 8624789 (+) True G155823
TU230785 lncRNA downstream 283126 8624905 ~ 8625636 (+) True G155824
TU230792 lncRNA downstream 287014 8628793 ~ 8629065 (+) True G155829
XM_043224225.1 mRNA upstream 3625 8321705 ~ 8333165 (+) True LOC122328506
XM_043225408.1 mRNA upstream 29026 8281226 ~ 8307764 (+) True LOC122329211
XM_043225307.1 mRNA upstream 161271 8156193 ~ 8175519 (+) True ntsr1
XM_043224025.1 mRNA upstream 203839 8114941 ~ 8132951 (+) False slco4a1
XM_043225409.1 mRNA downstream 10021 8351800 ~ 8353910 (+) True LOC122329212
XM_043224775.1 mRNA downstream 287425 8629204 ~ 8689833 (+) True pex14
XM_043224614.1 mRNA downstream 577940 8919719 ~ 8922523 (+) False tardbpa
XM_043224613.1 mRNA downstream 577941 8919720 ~ 8922523 (+) False tardbpa
XM_043224612.1 mRNA downstream 577942 8919721 ~ 8922523 (+) False tardbpa
TU230667 other upstream 3414 8331741 ~ 8333376 (+) False LOC122328506
TU230347 other upstream 1032432 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 1097871 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 1742055 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229053 other upstream 4640152 3694652 ~ 3696638 (+) False ube2t
TU230751 other downstream 146307 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 684729 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 779105 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 779105 9120884 ~ 9122393 (+) True G155927
TU231143 other downstream 1382439 9724218 ~ 9769620 (+) False G156081

Expression Profile