RNA id: XM_043224464.1


Basic Information

Item Value
RNA id XM_043224464.1
length 7080
RNA type mRNA
GC content 0.49
exon number 39
gene id LOC122328653
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9767539 ~ 9798417 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCTCGGGATGTTTGTCCGCATCGACGCGTGGCACGTTGTGCCCGAGAAGGGACTATTTTGCGAGAGCGCGGAAGCCTCGCGCGACGTGCCGGAtctgctttctgtgtgtgttgggTGAATGGAGGCGCAGCTCTTCCTGGTGAACAAACACTGACAACTATAGGGCAGCCTAGCGATACCCGCTTCCCAGAACGGCCACACACACCTTCTCCTTCACCCCCTAAACAACCCTAAACATGGCTGCTGAGCGTAAACACATCGCGCAGTTGAAATCCGAACTGTACTTCCTAATAGCCCGGTTTTTAGAAGCTGGACCTTGTCAGGACGCGGCAGAGACCTTGATACGGGAGGTTCAGGAGAAGGAGCTGTTACCCCGTAGGATTGACTGGACTGGCAAAGAACACCCAGGGAGTTACGAAAATTTGGTCAAATTGTACAGGCACATCTCTCCAGATCACCTGTTGCAggtgtgtgagcgagtgagtCCTCTTTTAGAGAGAGAAGTGCCAGCCAGTGTACCTGGAGTTAACTCACTGCTGGGAGCTGGACGCCAGTCAGTGCTACGAACAAACAAGAGTTGTAAGCACGTGGTATGGAAGGGGTCCGCCCTCGCAGCACTGCACTGTGGCAGGCCGCCCGAGCCGCCAGTCATCTACGGAAGCCCACCCAATATTGTGGAAACGGTGTACAGTCGGAGGCTGAATGGCTCGTATCGGTTGGGTCAGTTGGTTCCTACAGCTGTTTACCAACATATGAAGATGCACAAGAGGATTCTGGGACACCTGTCATCTGTGTACTGTGTCACCTTCGACCGCACCGGTCGCCGCATCTTCACAGGTTCGGACGACTGTTTGGTGAAGATCTGGGCGACGGATGACGGGCGTTTGCTGGCGACACTGAGAGGTCATGCGGCAGAGATTTCAGACATGGCTGTGAATTATGAGAACACCCTGCTGGCAGCCGGCAGCTGTGATAAAATGATCAGAGTGTGGTGCCTGCAGACCTGCGCCCCGCTGGCGGTACTGGAGGGCCACGCTGCATCCATCACGTCATTACAGTTTTCTCCTCTGTGCAGTGGCAGTAAGAGGTTCCTGTCCTCAACTGGAGCTGACGGCACCATCTGTTTCTGGCAGTGGGACGCACGCACGCTCAAATTCGGGCAGCGACCCAGCAAATTCATCGAGCGACCCAGACCAGGCGTGCAGATGATCTGTTCCTCTTTTAGTGCAGGTGGGATGTTCCTCGCAACAGGCAGCACTGATCACATCATTAGGGTTTATTACTTTGGAGATGGGCAACCAGAGAAGATATCTGAGCTGGAGTCTCACACTGACAAAGTCGACAGCATCCAGTTCTCCCATGGTGGCGATCGGTTTGTGAGTGGCAGTAGAGACGGCACAGCGCGGATATGGCAGCTGCAGCAGCAGGACTGGCGAAGCATTCTCCTAGACATGGCCACTAAGCTACCTGGCAAGTACAACCCTCCACCTTTAGAGGACAAAGTTACCAAACTAAAAGTGACTATGGTGGCTTGGGATTGCAATGACAACACAGTCATCACCGCTGCAAACAACTTGACATTGAAAGTGTGGAACTCGTACACAGGGAACCTTATTCACGTATTGATGGGCCATGAGGATGAGGTTTTTGTGTTGGAGCCACATCCATTTGATTCCAGAGTGCTTTTCTCTGCTGGGCACGATGGAAACGCCATCGTCTGGGATCTGGCAAGAGGAGTCAAAATACGCTCTTACTTTAACATGaTCGAGGGTCAGGGCCATGGTGCGGTCTTTGACTGTAAGTGTTCTCCAGATGGGCAGCACTTTGCTTGCACGGACTCCCATGGTCACCTGCTCATCTTTGGCTTTGGTTCTAGCAGCAGATATGACAAGATAGCAGATCAGATGTTCTTCCACACTGATTATCGGCCGCTTATCCGTGATGCCCATAACTTTGTGCTGGACGAACAAACCCAGCAGGCACCTCACCTCATGCCCCCACCATTCTTGGTGGATGTGGACGGGAATCCTCACCCTCCACGCTACCAGAGACTCGTTCCTGGCAGAGAGAACTGCAGAGAGGAACAGCTCATACCCCAGATGGGGCTCACATCATCAGGGCTGAATCAGGTGGTTAGTCAGCAGGCTGCAGAAGGCTCTAGTCCTCTTGATAGTATGATCCAGAGGCTACAGCAAGAGCAGGACCAGAGATTGGGGTCTGACATCAGAGCCAGCAGAgGATCTGTCAGTTCTCCCACAGAGGTCTCTTCTCCCCCTAACGTGGGTCTGAGACGCAGTGGACAGATCGAAGGTGTTCGGCAGATGCACAGTAACGCTCCACGCAGTGAGATCGCCACCGAGAGAGACCTGGTGGCATGGAGTCGAAGGGTCCTCGTTCCTGAACTATCACCAGCTATAGCTtgTAAGCAGGAGATTTGGCGTGCCGCTAAAGGAGAAGAGGAAATCAACATCTACAGGTCAGAAAGGAGGAGGCGCAGCGTACACAGCCAGTACCACAGAGAAAACCGGCATGCTATAGAAAATTCTATGGAGGAGGGGCGCCGTCACCAGGGGAACCAACATAACTACCATACACGATTGGCCGTGGAGGAAACAAGCCGTCAGAGTGAACCCAACGAGGAAGAGCACAGTGCCTCTGAGGGAGAACCCGAAGCAAGACCTCCGAGCAGAGAATCATCAGAtgaggaaagagaggaaaaagaacCCTGGCCTGATGATAACAGCAGCTCCAGCGATTACTCCAGCGATTACTCGGACTGGACAGCAGATGCTGGAATAAACCTAGAACCGCCCAAGAAGACCAGcgtgaagaaaaagaagaagaatgcCAGCAGCTCAGAAGAAGAtgtagagaagaaaaaagactCCAAAAAGGAGAGGAGGAAAGAAAAGCAGGACAAAGATGGAGCACtaccaaagaagaaaaagccAAAGGAGAAACGGAAGAGAATACCTGAACTGCAGAACCAGGGTTTGACATTAGAGGAATGGCTGCCCTCCGCCTGGATCACTGACACCATGCCACGGAGATGCCCTTTCACCCCACAAATGGGCGACGAGGTGTATTATTTCCGTCAAGGCCATGAAGCTTATGTGGAGAtggccaaaaaaaacaagatcttCAGTATAAATCCTAAAAAACAGCCCTGGCAAAAGTTAGAGCTCAGGGAGCAGGAGCTGTTGAAGATAGTGGGCATTAAGTATGAGGTGGGTTTGCCTACTCTGTGCTGTCTGAAGCTGGCCTTCCTGGATCCAGACACCGGCAAACTGACGGGCGGCTCTTTCTCTATGAAATACCACGACATGCCTGATGTCATTGACTTCCTGGTACTTCGGCAGCAGTTTGATAATGCAAGACAGAGGAACTGGATGAtagGTGATCGTTTCCGGGCAGTGATAGATGATGCCTGGTGGTTTGGTACGATTGAGAGTCAGGAGCCTTATCAGGCTGAATATCCGGACTCTCTGTTCCAGTGCTACAACGTCTGCTGGGATAATGGAGATACAGAAAAGATGAGCCCATGGGACATGGAGGAAATTCCCAATGAAGCATTTCCTGACGAGTTAGGTCTGAGCGTGCCTCTAACTAGAGAAGAGCAGAAAGCCTTATTGTACAAGCCCCTAGATGGAGAGTGGGGCTCTCGCACACGTGATGAAGAGTGTGAGCGCATCATCAGGGGCATTGACCAGCTTTGCACTTTGGATGTGGCTGCACCATTTGAACTGCCAGTGGACTTGCAGGCATATCCAACATATTGCACCGTAGTTGCTTACGTCACAGATCTGAGCACCATCCGACAAAGACTACAGAACCGTTTCTATAGGCGAATGTCGTCGTTGATGTGGGAGGTACGCTACATCGAACACAACGCTCAAACCTTCAATGAACCAGGCGCGTTCATTGTCAAAACTGCCAAATTCGTATCTGACCTCATTCTACAATTTATCAAGGACCAAAGCTCAACAGATATTATTCCACTGTATAACAGTATGAAGAAAACTGCTTTCTCAGATTCAAGCGATgatgaagatgaggatgaagaaCATGAGGCACCTTGTACATCTAGCCGCAATAAGAAGaggcagcagcagcagcctatTCTGAGGAGTCTGCGCAGTAAACCATCATCAGACCCTCAGAGCTGGAAGGGCCGCTGCAGAGAGCTGCTGGAGCTCATCTTTCAGTGTGAAGATTCAGAGCCTTTCAGACAGCCTGTGGATCTGGAGGAGTATCCGGACTACTTGGACATTGTGGACACTCCTATGGACTTTGGGACTGTTTTGAACCGGCTGTTAGAAGGAGAGTATGACACTCCTATGGATCTTTGTAAAGATGTTCGTCTCATCTTTAGCAACTCCAAAGCCTATACACCCAGCAAAAAGTCCAGGATCTACAGCATGAGTCTGCGATTGTCCGCTTTGTTTGAAGAGCATATCAGTTCCATCCTGACCGATTTTAAAGCTGCTCAAAGTCTGCACAGTGAGCGATTCACCCGTCAGCGGCTGCACACGGAGCGCTTGACCAGACAGTCtgtgaagaggaggaggagctcTTCACCTTCAAGCTCCGCCTCTAGTCCAGAAAGGAAGCGGCGGGTTTCGTCTCGTGCTCCTCCCCGATCGGACAATGCAGCTCCGCCCACTCCTGCTGGACCTTCCCGAGCTCCTTCTTTACGGCAAACACCTCCACAGGTCAACGGCAAGGCTGAGCCTCCTGTTGTCCCCGGTCGGACACGAAGCTCGGCCCGCTTTGGAACCCAACTCACAGACGCACCTTCAGCACAGTCAGCTCCTACACCTCCACCCAGCCACAGTAAGACAGCAGAGCCCTCCGCTAGAGTCCTGCGCACACAGAACTCTCACTCTATTGGAACCTCCAGGGAAACTGAGAGCTCTGCAGTTTCCCACACAAATGAAGGCGGGGCTAGAGAGTCTCGCAGGAAACTTCGGACACCTGTAAAACTCACACCAGGTCCAGTTGATCACAACTCTTCTCCTCAAAATAGTTTGCATTTGAATGGTCATAGTCAAGTGACTCTGGGAGTGGTACGAAGAGGCCGGGGCCGACCCAGATTAGACGCACAAATACGGACGCCAGTAGCGGTACTGCCGCCCCCACTGCCCCAGGCCTCtggaaaaaagagagggaggaaaagcaaaaaagagtTGGAGTCTCTCCGAAGAAGCTCCTCccatgaggaggagcttctgtCTACTGGTGATGAGGGCGGGGCATCTTCTACAGCCCAGGACAGTAGTCTTTCAGATTCAGGGGTAGTGACTCCAGAGTGTCCCAAACCACGAGGTAGACCCCGAGTTATCCGGATGCCGGATACCCCGGCTCCTTCAAGCCCCAAAGCTCTCAGAAGGAGCAGTCGCCGTGGAAACGAAGAAACCACGCCCCCTACGCCAGGCCCTGCCCAAAGGGAAGAGCCTGACATTTATATGGGAGAGGATGGGAGCTCGAAAGGGCAGATGAGAACACGTAACCAAGGCCGAAGGACAGCTTTCTATAACGAAGAAGACTCTGAGGAAGAGCAAAGACAGCTTTTGTTTGAGGATGCCTCTATTACTTTCGGCACGTCAAGCAAAGGGAGAGTCCGTAAGCTCACAGAGAAGGCCAAAGCCAACCTTATCGGCTGGTAACAATGCCAACTTTGCATGTCCTATGCGACACAACCCCTTATCCTCACCCCATTGGGGAGGGGGAACCATTCCTGCTGCTATCAGACTGTCATGATTATCTGAATCTTTCATTCTGACTCTCTAAATCGATTCTCACATTTTGAATCTTTGACTCTTTTGGTGACTTCAAGAGTCACGGCCCTTTGAATCCCCCCACCTTATACATTTTCTTCCACAGAAAATCACAAATGCAGTTAAATACTGATTTTCATATGCACTATTTGAATGCCAGTGAAGAAAGGTACCTATACAGTCTTATGAATCCAAATACCTGATTTCATCTCTCAAGAAAGCACTTATTTGAGGacgtttgagtgtgtgtgagtgtggtaTAACTTGAGCTTTTACTCTGTCTCATTTCTTTAAACTGTTAAttttatgcattgtttttaCACTGTTGTTGCTAAGGGCAACAAATCAAacacttgttaaaaaaaatctatttttaacagATCATTGTGTAAGTGGGTGAAAAGCTGTAGTGGAGTGCAGAGAAGGACCTCATAAATCGCGTGTTGTCTTTTTAACGTCTTTCTCTGCGAGTCGAGATCAGTGGCAGTGGTAATTCAcgcatgtttttatataattagcaATACCTTGTGCCTTTTCATACATTCAATACATTTTGGCTCCTTTGTACTCCCCagtttgtgtgagagagtgtgtttgatgCTTCAGCGCATTGATTCATCCAGTACAAACGTGTTATTGATCTGTTGCTGGGATAAAGATTAGTAAGCAGCATATCTACCCATGACcactgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgttgAGTTCATGCAGTTGTCGAGGTGTGTAATAGTAGTGACTTCATCACTCCATGCCTGTTTTGTCAGGCTCCCAAAATGCACTGTGATCCCTAACTAGAACcaagacttaaaaataaagtggcCACAAGAAGTGtttggacataaaaaaaaaaaaatgtctgaatgtcattgcattagagGGTGAAATAGCAAAGCAGGTGGCCTCTGCAGATAAATGATGGTAGGGATTTTCACAGAACACACTTGACTTTCTGTTGCCGTTTTTGAGAATATGGCTGacaatttaatgttaatttggaAACTAATTATGCAATTAAGTAAtgatgaataattattaatgtataataattggTAATTAACGTTTTCTATGTCAATTATCTAAACATTATTgcaaattaatgcaaataatatttgcattttaaactgatttgaCTTTGATTTGCTCAATGAggctttttatttgattagaaatacagtgcattatttttattgttgttattacaatttaaagtattttttatgtgttaatatatttaatatataatcagtgatttctttctttaaaaatatatt

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231109 lncRNA downstream 154943 9612250 ~ 9612596 (-) True G156056
TU231107 lncRNA downstream 159591 9607488 ~ 9607948 (-) True G156054
TU231104 lncRNA downstream 165062 9601962 ~ 9602477 (-) True G156051
TU231000 lncRNA downstream 578642 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 614037 9153080 ~ 9153502 (-) True G155968
XR_006247820.1 lncRNA upstream 69503 9867920 ~ 9877168 (-) True LOC122328702
TU231404 lncRNA upstream 152726 9951143 ~ 9952031 (-) True G156261
TU231407 lncRNA upstream 218039 10016456 ~ 10017421 (-) True G156264
TU231431 lncRNA upstream 254109 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 259594 10058011 ~ 10059303 (-) True G156283
XM_043224540.1 mRNA downstream 2741 9761699 ~ 9764798 (-) True si:dkey-261l7.2
XM_043224479.1 mRNA downstream 92902 9662413 ~ 9674637 (-) True LOC122328660
XM_043224520.1 mRNA downstream 134172 9622453 ~ 9633367 (-) True osbpl2a
XM_043224521.1 mRNA downstream 145667 9615533 ~ 9621872 (-) True LOC122328677
XM_043223962.1 mRNA downstream 205416 9549124 ~ 9562123 (-) True myt1a
XM_043224551.1 mRNA upstream 3424 9801841 ~ 9808266 (-) False hmgn3
XM_043224552.1 mRNA upstream 4926 9803343 ~ 9808267 (-) False hmgn3
XM_043224476.1 mRNA upstream 13584 9812001 ~ 9822297 (-) False lca5
XM_043224478.1 mRNA upstream 13584 9812001 ~ 9822297 (-) False lca5
XM_043224475.1 mRNA upstream 13584 9812001 ~ 9822297 (-) True lca5
XR_006247818.1 other downstream 557575 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 840929 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 847814 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 847814 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 1139148 8625758 ~ 8628391 (-) True G155827
TU231373 other upstream 3368 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 3368 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 33711 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 33711 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 432129 10230546 ~ 10231919 (-) False ankrd52a

Expression Profile