RNA id: XM_043224472.1


Basic Information

Item Value
RNA id XM_043224472.1
length 3822
RNA type mRNA
GC content 0.42
exon number 11
gene id nlrp12l
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10041448 ~ 10049914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGCGCGCAATCACTGAAGCGAAAGTAGAAATGTGGACATCTCATTCGGCTTGTTCGTCTCACAAGAACAGTATTCCTGAACAGTTAATCCATTCCAATTCAGCCATGAAGTGCCAAGAGGAATATAAGTCAAGACTGAAAGCCAAATTTCAGTGCATTCACAATGACATGTCCAAGCAATCACATCCCACGTTCCTGAATGACATCTTCACAGAGCTATACATCACTGAAGGGGAAAGCGAGAACGTCAACAAAGAACACGAGGTGAGGCAGATTGAGACAGTGTTGCGGAGAAAAACCACAGTGGACATTCCAGTcaaatgcaatgacatttttaaacattcgcCAGAGGAATACAGACCCATCAAGTGTGTGCTGACTAAGGGAGTTGCAGGTATTGGGAAAACAGTCTCAGTGCAGAAATTCATACTGGATTGGGTTGAGGGCAGCGCTAATCAGGATATCAGGTTTGTGTATCCGCTTCCATTCAGAGAGCTAAACCTGATGAAAGGAAGACATTTCAGCTTGATTGAGCTTCTACAACACTTCAAAATGGAAACAGACTCAGGAGATGATCAGGAAAGCCAAAAGGTTCTCTttatctttgatggtctggatgaaTGCCGCTTTCCTTTGGATttccagaaaaacaaaaagctaagTAACCCAACTCTGTCAGCTCCTATTGACGTTTTGCTAACCAATCTCATCAGTAACAATCTGCTTCCTGATGCCCTCATTTGGATAACATCCCGCCCAGCAGCAGCCAGTCAGATCCCTCTTGAGTACATCAACATGGTGACTGAAGTTCGAGGGTTTAATGACCCACAAAAGGAGGAATACCTCAACAAGAGAATCAATGATCAACGCCTGTCTGGTCGTATCATCACTCACTTGAAATCATCAAGAAGTCTGTACATCATGTGTCATATCCCAGTCTTCTGTTGGCTATCCGTTACAGTGCTAGAGAGAATGTTCAACACAGCAGAAGATGAAGAAATCCCCAAGACTCTTACTCAAATGTACACGCACTTCCTTCTCATCCAAACCCATGCCAAAAACATGAGATACACCAAAGAGCACAACCCAGGCCCGGAGGATGAAGGTATGATTTTAAAGCTAGGTAAGCTAGCCTTCCAACAACTAAAAAATGGCAATCTGATATTCTATGAGGAAGATCTGATGGCCTGTGGGATTGACGTGAAGGAGGCAGTGGTGTACTCAGGAGTTTGCTcacagatcttcagagaggagtCTGCATTAAACGAGAACAAAGTCTACTGCTTCATCCATCTGAGCATTCAAGAGTTTTTGGCAGCCATGTATGTGTATTACATGTTTAAGGTCCACCGCATCAATTTACTTGATCATGAAGAGCATCAAGAACTTACCGAGGCCACCTTGTTTGAATTGCATAAGAGTGCAATTGATGAGGCCATACAAAGCGAAAATGGACATCTGGATCTTTTTCTCCGCTTCCTTCTGGGACTTTCATTGGAGACCAATCAGAGACTTTTACAAGGCTTGCTTTCGCAGTCTGGTAGCAGAGCCTGTCAGAGCACTGAGGAAACGGTTGAATATATCAAGAAAATGATAGAGGAGATGTCTGTGCCAGAGAAGTCCATAAATCTCTTCTACTGTCTCAATGAACTCAATGACCTCTCTTTGGTCAAGGATGTCCAGCGCTTCCTGAACTCAGGACATTTTTCTAAACTTTCTCCTGCACAGTGGTCTgctttggtttttgttttactgacaTCAGAAGAGAAGCTAGATGTGTTTGACCTGAAGAAGTATATCAGATCAGATGAAGGTCTCACCAGATTGTTGCCAGTGGTGAAAGCTTCAGAAACTGCACtACTGGATAATTGTGGACTTACTATGAGATGCTGTAGATCTCTTGCTTCCACTCTTGGCTCCAACTCTTCTAATGTTCAAGTGCTAGATCTGTGCAATAACTCCATTGGAGACAAAGGACTGGAGCTTCTTACAGTTGGACTGGAAAACACACAGTGTAATTTAGAGGAACTGAGACTCTCATACTGCAGAATCACCACACGTGGCTGCTCTATTTTGGAAACAGGGCTGCTTCCAAACCTTCCAAACCTTAGGGTGCTGGACCTGAGTGAAAACAGTCTGAGAGAAGCAGGAATTAAGGTCTTGGCCAATTACGTGAAGCATCAGCACTGTAAACTTGAGATATTGAGACTTAAGGACTGCAGAGTTACAACTCAAGGCAGCATTGCAATAGCCTCAGCTCTGCTGTCCAACCCATCACACTTAAGAGAGCTGGATCTGCACTGGAATAACCCAGGGGATGATGGAGTGGAGAAGCTTTCAGCTGTCGTACAGCATCCACTCTCACAGCTTGAAACACTTTgGCTAAGTTACGGTTTGCTCACCAAGAAGTCCTGTCAGTCTTTGGCTTCGGCTCTGAGGTCCAGCTTCTCTACTCTGACAGCTTTAGATCTGAGTGGCAACGCTATCTATGATGAAGCGTTGAAAATGCTGTCAAGTGGACTCGGAAGCTCTCACTGTAAAATAGAGATTTTGAGGCTGGCGCTGTGTGAGATCACAGAGGTGGGTGTTGATGATTTGGCCTCAGCTCTTGTTTCTAACCCAGCTCatctgagagagctggacctgagacAGAACCACATAAAAGATTTAGGCGTATCAAGACTTGCTGAAGTAATGAAGATTTCCAACTGTAAGCTGGAGACGTTATGTTTAGGAGACAGTGGGGTCACAAAGGACGGTTGTGCTGTCCTCGCTGCTGCTTTAAACTCAAACCCATCATatctgagagagctggacctgagcaGTAATGAGCTCACAGACGCAGGGATGAGCCTCCTTTCTCCTATCCTGAAGAATCACAGCAGCAACATTACAAAATTAGATTTGAGTCGGTGTGGTTTAACCATGGCCTGCTGCAGTTCACTGGCTGCAGCTCTTGAAGAAAAATCCTCATGTCTTAGAGAGCTGAATTTAGGAGTAAATAATCTGCAAGATGTGGGAATTAAACTCCTCTGTGCTGGACTGGAAAATCCACATTGTCAGCTGGACACTTTAGGGCTGTCTAACTGCGGGGTCACAGGGGAAGGCTGCACAATTCTAGCCTCTGCACTGAGATCTAGGCACTCACTTTtaagagagctggacctgagtgaAAACAGTCTTACAGATTTAGCCGTGAGACCACTGCCTGTCTTGCTAGATGATCCAGACTGTACGCTAGAGAAACTTATCTTGTATTAAAATCAGGCCTGTTTGTCATACCTCACTAGCGGTGACTGCACTTCTTTGTGGTAATTTctatgatgttttatttaaaaattctttatATTATCGCACACTATTATATTCTAGTATGCATTAAAGAGCGGAGAATTCAATCGCATTGCAATAGTGTTGGTcatactttacattttatgctAATATGTACTATGTAGTTAAGATAATGTTGCAAGTTAACCGGTGCACTGCTATTGTTTGCAAAAGATGGACCAAGGTGTGCACTTTTTAACTATAAAAGGTAATTAACACTATTCCTACtatttcttctttcaaaaagttgaaaaattccatcatgtcatttactcacacttgagtagttccaaagctttatgaatttcttcataaacacaaaaacctttaaataaagtttgtaaccaggctgtttcgAGTcagttgacttccatagtaattTTAAGTTATACACTGGAGTGTTTATATGTATTGGTTacttattcatatattttaagaatttagtcctgtaaaacttttttttgtatcaatAAACGACAATACAAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231407 lncRNA downstream 24027 10016456 ~ 10017421 (-) True G156264
TU231404 lncRNA downstream 89417 9951143 ~ 9952031 (-) True G156261
XR_006247820.1 lncRNA downstream 164280 9867920 ~ 9877168 (-) True LOC122328702
TU231378 lncRNA downstream 210323 9782108 ~ 9831125 (-) True G156245
TU231365 lncRNA downstream 225954 9678261 ~ 9815494 (-) True G156235
TU231431 lncRNA upstream 3274 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 8759 10058011 ~ 10059303 (-) True G156283
TU231491 lncRNA upstream 63365 10112617 ~ 10115673 (-) False G156313
TU231490 lncRNA upstream 64845 10114097 ~ 10116955 (-) True G156313
TU231487 lncRNA upstream 66532 10115784 ~ 10116955 (-) False G156313
XM_043224531.1 mRNA downstream 2023 10032538 ~ 10039425 (-) True mtfr2
XM_043224532.1 mRNA downstream 3604 10032538 ~ 10037844 (-) False mtfr2
XM_043224534.1 mRNA downstream 3692 10032537 ~ 10037756 (-) False mtfr2
XM_043224485.1 mRNA downstream 46874 9971502 ~ 9994574 (-) False hbs1l
XM_043224546.1 mRNA upstream 10739 10059991 ~ 10062998 (-) True ormdl2
XM_043224529.1 mRNA upstream 67812 10117064 ~ 10121368 (-) True letmd1
XM_043224528.1 mRNA upstream 67812 10117064 ~ 10121364 (-) False letmd1
XM_043224530.1 mRNA upstream 68750 10118002 ~ 10121366 (-) False letmd1
XM_043224550.1 mRNA upstream 81754 10131006 ~ 10132159 (-) True rprm3
TU231376 other downstream 207766 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 207815 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 233079 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 233216 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 831484 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 181294 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 187844 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 316291 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 626432 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 1051492 11100744 ~ 11105223 (-) True G156746

Expression Profile