RNA id: XM_043224478.1


Basic Information

Item Value
RNA id XM_043224478.1
length 2968
RNA type mRNA
GC content 0.49
exon number 9
gene id lca5
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9812001 ~ 9822297 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCCATGGCGAAGCGTCACTATGACACCGGTAGCAGAAGGCGAGGCGTGGATTCAGAGATTTCACCAACTCCTTCAGTAAAACACATATTCCTCTTCAAAAGCTACAATATCCGCCGTAATCGACCTCATATGCCGTTTTATTAAAGGACAGACGACCAAATAACCGCCTTCGCCCTCTCTTTACCGGATCGGATAAGGTTTTGCTAATCGTTTGGCGTCGTCTCTAcagtagagtgtgtgtgtgttgtcctAGTTGCACGATATAATCCCAGCTAGCTCGTCATGTAGCTGGCTAGCGAGTTTGTGAGCCGTTACTCGAGCCACATCATGAAGAACCCGACTGTGTAAATATGGATACTTAGAAGGGCACGAAACTGGACGGATCCGAACTGACAGGAAGAGAAGAGGGAAAGAGATCGGGAGGTTGGACTAGGAAAGGTTCTTCTGTTGCGATTCAAAATCGGGACGCCCATAGTGCAATAGCACTGTATGTCGACATGCTGCCTGCAAGCCTTTCGGCAACGACATGAACGCAGATCTAATTGATTAAAaGGAGAGACATGGACTTGCATGAGGATAATCAGGTGTCAGAGCACAGCCGATTGTCTCACCACAGTGATGAGAAGATTTCAGAATCTCCTTTTCGATCTGGAAAACAGGAGAAATACAGAAAAGACATTGAGAGCTCGGTTGGGGATCACGCGCGAACCAGAATGCGAGACCCAGATGGAGATCCAGACCGGGATCGCTGTTCGGATGGAGAGCGTAGCAGTCCCTCTTTCTATTCTGACGATTATGAAAACGTCTCACACTCAGATCGGTCTCTCTCGCCGTCAGCCTCTCCGTCTCCACAAAGAAGAGGCAGGTCTAGGAGAGTGTCCAGCAGCCCCTTACATCGAGCAGGTGTACGTAAAGGTGTGTCACGCCGTCTCCCGCCTCAATCCCATTATCCTCAGCAGCGTTCAGGAGGTATCCGATCCCAAACTTTGAGCAAAGACGCTCCATCCAAAGAAGTGGACCCAGTCACCAAACGCATGCTGTCTGCCCGCCTGCTAAAGATCAACGAGTTAAAGAATGCACTGTCTGAGCTGCGGCTGCATGCCGATGAGTTGCAGCGCGAGAACCGTTTACTGCGACAGATGCAGCTGAGGCAAGAGAAAGCTCTACATCGCTACAATGACACCGAGAGCGAGATCTCGCAGCTGTTGTCTCGTCACAACAATGAGACTCATGTTTTGCGCGAGAGGTTGAGACGCAGTCAAGAGAACCAGCGCACAGCTGAGCGCAGCCTCAGGGAAACGGACGCCCAGCTCCAGCGTTGTCGCAGCCAGCTGCAGAAACTGCAGCAACTCGCAGATGACCAGAATCTTGGAGAAAGAGAGGAATTGTCACGAAAGCTAACGTACACTCAAGGCAAATTACAAGAAAGTGAACGCAGagtgaagGAGTTGGAGAAGAATATGGAGCTAAGCAGCGGGAGCTTTCAGAGGCAGCTAGCTAATGAGAGGAAGAGAACTCATGATGCACAACAGGAAGTTAAAGCAATACAGGAGGAAGTGGAGAGGATTGGCACTAAACTAAAGgagaaagaaaaggagcTGGATGCTCGGAACATCTATGCTAACAGGATGCTGAAAGCTTCTTCCAGAAAAGAAGCTGAGAATGGCAGCAAGCGAAAAGTCTTCAATACAACCAGCACTAAGGCAGTACAGACAGAGTACAGAACGTCCTCACTGGACTTTCCATCACCACCTCCAGCTCTTACCAACGAACTCCCACCTGACGACCAGACTGATGATTACCTCTCTCTTAAGGATCAGCAAGGCAGAGAACAGAGACCTAAAGAAGCAAAAGAATGGAAGATTCAAGAGTTTTGGAGGgaaagggagaaagaaagagacatgGAATCAGGGGTGGAACAAacaagagagaatgagagagaagaTGAGGCAATGtatgacagagaaagagaaatggagCTGCTGAAAGACAAGGAGAGGCAAAGACTGCATCAACAGCACATTGCAAATGAGAAGAACACAAAGGGAAACCGAGGCCTGGACAGAAAAGAAGAAGATTGGAGAATTGGCCTGTCTGTATCCCACAGGGAGGAAGAGAGCAGGAAGCAGCGTGAACTGGAAGAGGTACAACTTAAAGCAAGAAATCTAGAGATCCAGGCCATCAATCCAGAGAGTGCAGAAGAGGAACGTCAACGCAAAGAGCAGCTACTAGCTAAGATGCGTGAGATCGACATGCAGACTCAAGGTCAGGATTCGGACTTCTTTTCCGACGACACAGGAAGTGTTCGCTCTCCTCCACGGTTGTCCGAGCAACGGAACCACAACGGTATTTTCAAATACACAGAACCAGAAGAGAAAGCAAACACACTGGCGAGTGGGAGAAGAGCAGGTGCTCTCCGAACACATGGACCAAGTGAGGATCTTGATCTTGCTTTTGGCAGCTACGCCCCTTCTTTTGGTAAATCTGCCCCCCGTGCTGGTTTGGGTGCACGCAATGCAAATCAGCCACCTCGAGAACTAGATGAAGGGCTGGATCTGGGTGGCCTGGTCAAAGACAGGAAGTCCAACCTCATGCAGCAGCTTTTTGGGGCCTCTGCCACACCACCTCCTTCAGATCCGTCCAGCAGGATGGAGATCCTAAGCCCACCTCTAACAAGCCAGTTCCCATCAGGATCAGTGGGTGGACGCAGGAGGGACACAGACACACCAAATGGACTAAACATCAGTTCTCTCTCCAACAATAGGAGCACTCTTCATGTGTCTGAGAGCCGACCCGCAGTCAGGGCCATCACGTCATTCGATGACGACATAGAAGAAGTCACACTCTGAATAGGGCCCTTTTAAAGGAAATACgaattaatcagtttttttgaaaacacaaggaaaaatCTGGAAACATCTAATATTTTGTACTGAGCTCTGATTAAACAAAGCTTAGTTTGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231109 lncRNA downstream 199405 9612250 ~ 9612596 (-) True G156056
TU231107 lncRNA downstream 204053 9607488 ~ 9607948 (-) True G156054
TU231104 lncRNA downstream 209524 9601962 ~ 9602477 (-) True G156051
TU231000 lncRNA downstream 623104 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 658499 9153080 ~ 9153502 (-) True G155968
XR_006247820.1 lncRNA upstream 45623 9867920 ~ 9877168 (-) True LOC122328702
TU231404 lncRNA upstream 128846 9951143 ~ 9952031 (-) True G156261
TU231407 lncRNA upstream 194159 10016456 ~ 10017421 (-) True G156264
TU231431 lncRNA upstream 230229 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 235714 10058011 ~ 10059303 (-) True G156283
XM_043224552.1 mRNA downstream 3734 9803343 ~ 9808267 (-) False hmgn3
XM_043224551.1 mRNA downstream 3735 9801841 ~ 9808266 (-) False hmgn3
XM_043224464.1 mRNA downstream 13584 9767539 ~ 9798417 (-) False LOC122328653
XM_043224463.1 mRNA downstream 13585 9767539 ~ 9798416 (-) True LOC122328653
XM_043224540.1 mRNA downstream 47203 9761699 ~ 9764798 (-) True si:dkey-261l7.2
XM_043224553.1 mRNA upstream 9512 9831809 ~ 9833648 (-) True zgc:153284
XM_043224495.1 mRNA upstream 15138 9837435 ~ 9865787 (-) False eya4
XM_043224492.1 mRNA upstream 15138 9837435 ~ 9865787 (-) True eya4
XM_043224497.1 mRNA upstream 15138 9837435 ~ 9865786 (-) False eya4
XM_043224493.1 mRNA upstream 15138 9837435 ~ 9865786 (-) False eya4
TU231374 other downstream 3632 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 3769 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 602037 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 885391 8921564 ~ 8926610 (-) True sst6
XR_006247824.1 other downstream 892276 8913063 ~ 8919725 (-) False c23h1orf127
TU231375 other upstream 9831 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 9831 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 408249 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 414799 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 543246 10365543 ~ 10367369 (-) False LOC122328779

Expression Profile