RNA id: XM_043224479.1


Basic Information

Item Value
RNA id XM_043224479.1
length 4252
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC122328660
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9662413 ~ 9674637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGACACAGTCTAGATGAAAAAGACAGATAAAGCGGGGTAGATCTGTGGCTAGAGACAAGTAAGAGACAGAAACCTGGTCccaacacacacagcatgtgaTTGTGGATCAGCATCTAAACTATAGGAAAACACATGAGAGGAACGAAGACTGGATATTCTCCTTCCTGACAGGACAGACAAACACCAACAGCAAAAGAAGAACCAATGAGACCGGCCTCCCTCACACATGCCCATCCTCTGTCGCCAGCCTGTCTTCCTCCATCCTTGGTGTCGTGCTGTGGATCTGCTAGCAGACGGCCATCACTGGCATCATGCCGGCTGCACTGAAGTCATCTCTGGATGGGAGCATGACAGATTCAGGGGAGCTGGAGCAGGCAGCGACTCCCTGCTTTGGAAAAGTGCCCCGTGACCTGCTCCAAAACTTTCCTCACACTAAGCGTGTGGGCAGCTACCTGGTGGGCAAAATGATCAACAAGGGCTCATTCGCCAAGGTTATGCTGGGCATGCACATCAGTACAGGAGAGAAGGTCGCGATCAAGGTGATAGATAAGAAAAAGGCTCGTCAGGAttcatatgttttaaaaaacatgaagCGTGAACCCCGGATTCATCAGCTGATCCGCCACCCGAACATCGTCTTATTGTTGGAGACCTTGGAGACGGAGAACTGCTACTACATGGCCATGGAGCTGTGCGGAGGAGGAGACCTCATGGATCGAATCTGTGAACGCAAACGActggaggagagagaggtgCGCAGGTACACCCGCCAGATACTGTCTGCCGTGGAACACCTGCACCGGCACGGGATAGTTCACAGGGACTTGAAGATTGAGAACTTCCTGCTGGACGAGCACAACAACATTAAGATAGTAGACTTTGGTCTGAGTAACACTCTGAAGGCAGATTCTCTGTCTCTGGAGCTGCTGAACACTCAGTGTGGAAGTCCTGCTTATGCTGCTCCTGAACTGCTGGCACACAGGAAGTACGGGCCTAAAGTGGACGTCTGGTCTGTggGTGTGAGCATGTTTGCCATGTTGACTGGCACGCTGCCATTTACAGTGGAGCCCTTCAATATTAAGCAGCTTCACCTGAAAATGGTGAATGGAGAAATCAGTCCGATACCATCAGACATCAGCAAAGCGGCTGTACAGTTTGTCTTGTCTCTGCTGGAGCCAGAACCAGCAAAAAGGCCAACGATAAAAGCAGCAATGGAGGATAAATGGCTGAATGAGGGTTATGCCAAAAGACCCCTCCATACTGTCAATCATAAAAACAGGCTGCGTCCTGAGGATCTGAATACAGCTGTGTTAAACTACATGACTGAATCTCTAGGTTATAGTCTGTCTGATATCATCCACACTGTTATCAGTAACAAGCCGTCAACCATTTTGGCTTGCTACCATCTACTGCTGAAAAAACTCACCAGGCATCAGAAAGTAGTGAGGACCATGAAGAGAGAAGAGAACAGCGAGTGGAATCTTCTAAACAAGGGCTTGTCGAGAGGGAGAAGCAACGCGAGTGCAAAGAGTCAGCAGCAGTCTCCTCAGAGTGACACAGCCAATGAGAGGAGCTCAAGGCAGGCTAGTAAGACCCAGAGGAGCCAATCACAGGACAGAGATGCCAAGAGTGGCACGAAAAGGACAGCGGAGACCATCAGATCAAAGCAGCCAAGCCTAGTGGACAGAGCAGAGTCCCCCTCCTCCCTGCCCCTGGATACAGCTAATGAGATTGCCATACTGGTCGAGACACAAGATGGGCTGATTCCTAAggTCTTAACTTTGGGTGAGAAGGAGATGCTTTGTGTCTCACCGCCTAAGTGTTCCTGCAGAGAGGGAAGTGGAACCAAACTGTGTGACTCCGCCCCTTGTGATGCCACTGTAACTATAGACACCTCTAGAGACTCCCAGACAATGAAAACATCAATCAAACCACACGATCTGAGACCGACTTACTCTGACAAATATCACGCCCTGGAATATGAACATCAGCCTGATGACAAGTTAGAAAAGTTGCAGACGTTCTATTCTGACAAAGGGGCTTCTCCCAGAACTGGACAGCGCTTTAAGGATCTATTACTGGCCATCGAAGAGAAAACCTACAACGGTCGCCACCTCAGCGCCATGGAAAGCACGACACAAACCTCCCCTTTACCTCGACTACGTCACACTGGAACGCTGAAGGAAACCACGGCTAGAAAAGTCACTTGGGTTGGTCTTACGCGCCACGCAACGCCTGACACAGGCTCCTCGCCTTTCTTAGTAAATGGCTCCAAACCGCCATTGTTTCCATCTCAGAGACAACAAGCTCTCGTCATTAAAAACCTGAGACATGCAAAGGAGAAGAGGAACACAGGAACgggagggggaggaggagggaTCGCTATCCCCAGTAATACAGCGAAAAGAAACTCTGTTCAGTTGCGAACAGCTATACAGCGCAGAGTCACGGACCTCAACTTACCAATGCTTCCGTCGGCTTTACAAAACAAATCtgacaaaaagacagaaatcCTCAGAATGGATTTTGGGTGATATTTGAGGACCTGAGGCCCTCCCAATAAGAATATGCTGGGTTTAATACAAGTCAGTTTCAGTGAACAGTGTTTATGGCATAATGCTGGTTAccacaaaacaaatcattttggGTTAAGTCTAGAAATTACAAGCAAAACCATAGGTTTTTATGGACTTGGCAATTTACAATTAGAGTAAAAAACACAGTGTTTATATTACTACATATATTTCATGTAGTAATCTGTAGATTTCAATGACAAtacatatctttttttgttttgttttacatttcatttctaaCGCACATTTTTCATACCCAATAGgctatttataatatatttgaccTTTCTAAAAGTTTTTGGTAACtcttaataaaaatgcagtcatTCAgtcatgttagctcacagtgcattaactaatgttctTACACGGCTTCatactcgattctgattggtcactCACCACATTCCAAGGTTTGTTATTCCCAGATAACAGCCGGTAAAACTAATAACACAGGCTCATCCGAGTGCTACGAATCTTGACCGTAACTGGCTCCATCTTCCAGcttaaattagtaaaatattacaatataataaactCAGATCGATGCTTTGTGCCTAATTATTTACTGTTGTGGCAAGAAGCTGTGTAACAAGCAGGTTGTTATCGGCAACCCAGgtttaacaaacacaaattgtgattttaataatgcattcgtaaatgctgaaattaacattaactaagattaataaatgctgtagaagtattgtttattcttagttcatgttaattaatgtggttaactaatgaaccttattgtaaattgttaGAGTGCAGAgaagtgtgtttatatattatcccctggtttatataaaacattccaaaaaacatggtaaaatgtTCTGACAAAGACAAATCTTTTCAcaattatttgtgatttatgcagtgatttaaaaacaaaaaacaaaacagatatctaaatgtaaaaatatttaactgtaatataatCAACAAAACTTAGAAATTTCAAACATGAATATTCAACATTAAGATTTCTATTTGAGAAATTAGCACATTCTTAAATAGATAATTCAATTATTTGCGtatattaaacaacatttcataaaaaaattcttatagTCCTCTAATTTTACAAAGTTAAAATCTTTACCCAATTCACCTTTAGTGCTTTGTCCTAAATGCACTTCCACTGCAAGTGCCTCACTCTAATTTATTTGTGGTAATCAGCATTATGACAATACGCAATATCTGCTTCAGCAAGAAAAACGAGATACAATATGTCTACAACATATCTTCATCCCATTACCTCCCCTCTTGCCCTCCATCCTCTTTTTCCTACCCTAATCCCTTGGTCCCAGGACAATTCGACTACTCTTGGGTTTCTTAATTGTCTGGTTGGGATTTGACTGATGCCTATTGTAGGTTTTAAGCTGCTATCATGTTTCTCGCTTTATGAATGAATGCATCTCAATGGCGTCGCTCAAGTATGCCAGTCAGTGCCAAAGGATGAGGATCCATAAGCCAGCTTTGGAGGAATATGGCTAATATAATCAAAGTATTATACTGGCTTTTTGCTTGATGCTTACAGTACAATAAATTAGGAAACAATTATTCACGAATGTGGCAATGTAATTTTGGTACGTCTttgtttttgctgaattttttttagtttttcacaaCTTATCTTACAAATAAATTGACAGGATACGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231109 lncRNA downstream 49817 9612250 ~ 9612596 (-) True G156056
TU231107 lncRNA downstream 54465 9607488 ~ 9607948 (-) True G156054
TU231104 lncRNA downstream 59936 9601962 ~ 9602477 (-) True G156051
TU231000 lncRNA downstream 473516 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 508911 9153080 ~ 9153502 (-) True G155968
TU231365 lncRNA upstream 3624 9678261 ~ 9815494 (-) True G156235
TU231378 lncRNA upstream 107471 9782108 ~ 9831125 (-) True G156245
XR_006247820.1 lncRNA upstream 193283 9867920 ~ 9877168 (-) True LOC122328702
TU231404 lncRNA upstream 276506 9951143 ~ 9952031 (-) True G156261
TU231407 lncRNA upstream 341819 10016456 ~ 10017421 (-) True G156264
XM_043224520.1 mRNA downstream 29046 9622453 ~ 9633367 (-) True osbpl2a
XM_043224521.1 mRNA downstream 40541 9615533 ~ 9621872 (-) True LOC122328677
XM_043223962.1 mRNA downstream 100290 9549124 ~ 9562123 (-) True myt1a
XM_043224327.1 mRNA downstream 114071 9543486 ~ 9548342 (-) True pcmtd2a
XM_043224328.1 mRNA downstream 114074 9543486 ~ 9548339 (-) False pcmtd2a
XM_043224540.1 mRNA upstream 87062 9761699 ~ 9764798 (-) True si:dkey-261l7.2
XM_043224464.1 mRNA upstream 92902 9767539 ~ 9798417 (-) False LOC122328653
XM_043224463.1 mRNA upstream 92902 9767539 ~ 9798416 (-) True LOC122328653
XM_043224551.1 mRNA upstream 127204 9801841 ~ 9808266 (-) False hmgn3
XM_043224552.1 mRNA upstream 128706 9803343 ~ 9808267 (-) False hmgn3
XR_006247818.1 other downstream 452449 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 735803 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 742688 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 742688 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 1034022 8625758 ~ 8628391 (-) True G155827
TU231373 other upstream 127148 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 127148 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 157491 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 157491 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 555909 10230546 ~ 10231919 (-) False ankrd52a

Expression Profile