RNA id: XM_043224487.1


Basic Information

Item Value
RNA id XM_043224487.1
length 2833
RNA type mRNA
GC content 0.42
exon number 5
gene id hbs1l
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9971502 ~ 9994574 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGCGCGTCCCTCCTGTTCGTGATGGCCGTCAACATGGCGGCAGTGGAGTGAGACGCATGCCTAAACTCCACACTgagaattgatttttttttacctcgcGTACTTTGTTTGCGTGAAAGAAATCCGTCGAACAAAAATGTCCCGTCACAGGAATGTCCGAGGTTATAACTACGACGAAGACTTTGAGGATGATGACATGTATGGGCAGTCAGTGGAAGATGACTACTGCATCTCTCCTGCCACTGCTGCACAGTTTATATACTCACGTCAAGACTCAAGACAGACTCGACATGTAGAGACCCTGGAAGAGGCAGAatatgaggaggaggaagaggagatgCCAACATCTCCCTCTGTTGCAGGCACACTAGACCCACTACAACAAGGTCGGTTGTATTCCTGTTTGGATCAGATGAGAGCTGTACTAGGAGATTCAATTCCCGACTCCACACTGACTCAGGCAGCTCTGAAATATGACTGTGACCCTCAAAGAGCACTTGATTTTATTCTAACTGAGGAGAACACCAATACACACGCCCCTCCAGCCAGAACCAACCCACAACCCGAGCCTATCACCACAGCTGCACCACAgaaagGAGCCTTAATTCCTCTCTCACACAATAGTACTAAGACTCTATCAAGTGGCAGCAAACAATCttacaacctcagtgacctttTATCCATGCCTGACCCAAATAAGTCCATACCTGCTGCTCTAAACCCTGCCCCTGGTCTGGGAAGTTTGGGAAGAGACCATTTAAAAGTAGTTTCGTCTCAGAATTTAGGTAGTGATGCTGGGCTGTCACTGGCACAGCTAATAGCTGAACATGAACAGAAGTGTACAAATGTTCCTCCTCTAATTCCCTCCACTGGTCTCTCATTGGATAACACGGTTCCTCTCACTGCCACTCCTTTTGGTTCTTTTCTTGGTCCTGTTGCCCCACTTTCTGCATTGCTCTCTCACGGTCCTAGTCTCCCAACTATGTCCGGTTTGTCTGTTAGCTCTGGTGCGACACTCTCCTCTGGTCTCTCTTTGGGCACATCTGTCCCAGCTGGTCTGGGTGCGACATCGTCATCTCTTTTAACCTGCTCTCTCAGTAGTCTAGCGCTACAGGATTCCAAGCCATCCGCCCCTCTTCCTTCCTCATTGGGAAGTTTGAGCACTGTCCTGCAAACCAGTGGACCGTTGGGAGTACCTGGGCAAGCAAAGAGTTCTGGAAGCATTTCATTGGCTGAGCTGATCCAGGAGCATCAGGACAACAGTCCCAAACTCTATGACAGTTTGCCAGGACTATTAAAAGCGCATAATTCTCATACAACTTGtcctcaaaacaaacaaaaacctatCCAAACATGTGCTGCAAATCCTCCTCCTGGCTTTTCAGATGCACCATCCCTGTCTGATCTCATGTCCCAACACCAATCGTCACTTGAGCTGAAACTTCCAACATGCCCTGCATCACTTCAGAGTGAAAATGGGTCTAATCATTCAGCAGCTATACATAAGCCCCGCCCCCTTAGCTTAAATCAGTGCGTCGATCTTAGTGCACTTATGTCTCAAATGTCACCCAGCGGCCGTTCACCAACCCTATTGAGTTTTACCCACATCTCTGCCAGTCAGAAAAAACGTGTGTTTGCTAAACCATCGATTTTTGCATTAGcgatgtgtgtgcgtgtgagaaaCGAGAAGAGCCGGTGTAATAAAGCAACTCATAATGCTTTCTTATACAgcagacagacggagagagtGAAAGAACGAGTGCAGTATCCACCTCTCCATCACATCACCCCGTTTTCTTTTGAAACACCCTCTCCAGATGACATAGTCAAAGCGAATCAGAGAAAAGCGTTTACTCGAGACTGACTTtagaaacaaaaccttttttttttttttttttttttttttttgtacatttttaatatctcCCAAACTTAAACCTCTGGGTATTTTGAAGCTCAggttcattttgttttacatgcCACAGTCACATTTCTGGCCATAATTTAAAGGAGCAAGGCTATATCTGGAAGTTGTCGGACTAAATGGTGAATGGTAGTGTGTATAGAATGAACTAAATAGAGTAGCGCTTAGAAAAATATTACcgattttagaaaaatatgaacGGTCATAAGCACTCAGATAGTTTGTACTTTTCAGTTATGAGATAAAGCAGTAAGACTGCTATGTTATTTCATTTCCCAAATAATACTTTTGTATTTtcgtatatatttatttacagctaACATTGCACTGGAAAGTTAAAaagacttttgtttttgtctacaACCCGAGATAGTAATTGAGTATTACTTTTAAagtctttcatatttttaatttggattttcatgctttcagagtttttaaaatggttcattaaactaaatatatatttttgtacttgATTATGTAGTTTTATGGCTTTTCAAAAATTACGTTTAAATTCTAGAGTCGTTCTGCATAGCCAAAAAAAGGAGCAGatacagtgcaaaaataaaggaataaacaaCAGATTCTGTCTACATCTGTTTTGCTGCCTTTTGAAATGAGGTGCAGTGCTGGTTCAccacaaacacagaaagaggGAAGACATTTGGGTTTGGGGACACCTGGAGTTTTTTCTATTACGTGTTTGACACTCAGTGCTGTAAAAGTGCATTTCAGTCATTATAATAAAAGTTCAATAcgcttttagatttttatttttattcagttttgatttgctgcatttttgatttgttttaaagcactGATGTACATAAGACTGCTGTGGCCACGGGCCTGACGTTTTgtatatattctgaaataaaGATTTTCCAGTTTCCTTTCTGA

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231404 lncRNA downstream 34475 9951143 ~ 9952031 (-) True G156261
XR_006247820.1 lncRNA downstream 109338 9867920 ~ 9877168 (-) True LOC122328702
TU231378 lncRNA downstream 155381 9782108 ~ 9831125 (-) True G156245
TU231365 lncRNA downstream 171012 9678261 ~ 9815494 (-) True G156235
TU231109 lncRNA downstream 373910 9612250 ~ 9612596 (-) True G156056
TU231407 lncRNA upstream 24454 10016456 ~ 10017421 (-) True G156264
TU231431 lncRNA upstream 60524 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 66009 10058011 ~ 10059303 (-) True G156283
TU231491 lncRNA upstream 120615 10112617 ~ 10115673 (-) False G156313
TU231490 lncRNA upstream 122095 10114097 ~ 10116955 (-) True G156313
XM_043224518.1 mRNA downstream 18415 9962994 ~ 9968091 (-) True aldh8a1
XM_043224510.1 mRNA downstream 60336 9920047 ~ 9926170 (-) False sgk1
XM_043224534.1 mRNA upstream 40535 10032537 ~ 10037756 (-) False mtfr2
XM_043224531.1 mRNA upstream 40536 10032538 ~ 10039425 (-) True mtfr2
XM_043224532.1 mRNA upstream 40536 10032538 ~ 10037844 (-) False mtfr2
XM_043224473.1 mRNA upstream 49446 10041448 ~ 10049914 (-) False nlrp12l
XM_043224470.1 mRNA upstream 49446 10041448 ~ 10049262 (-) True nlrp12l
TU231376 other downstream 152824 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 152873 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 178137 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 178274 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 776542 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 238544 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 245094 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 373541 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 683682 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 1108742 11100744 ~ 11105223 (-) True G156746

Expression Profile