RNA id: XM_043224505.1


Basic Information

Item Value
RNA id XM_043224505.1
length 2952
RNA type mRNA
GC content 0.49
exon number 20
gene id eya4
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9837435 ~ 9865787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCACCCCGCATGGCAGCTGCGCGCATGCGCATCAGTGAGCGCTCTCCCTCCACCGCTGCAAGAGAACTTTAATAATGAAGTAGACCACGGAGTGCGCGTGAGCTCACGTTGACTTCAGGAGCGTAAATTAAAGGGGAAAACACAGCTAGTGCAAGTCAGCGCTCCTCGGAGTTTGGGTTAAAGTGGTCATCTGTCGGTTGGAGCGTTCCGCTCCGGTGCGGCCGGTGTAGCTCTCATGAACTTAGGGAGGACTTCCCCGCGAGCTTCACTGACAGCGCGTGCACTGACTAGCGCGAGCTGTTCCTCGCGCTTCACGCAGCTCGACCACTTGAATATTTTTGGATGAGCTTGTCAACAGAGTGAATGCGAACGGACCTTCTGGAGACTTTGGAAATCGTACGAACGCACAACTCATACGAGTGTCTGGACTGTAGTCGAGGGGAGTGGACGTTCAACTGATGGAGAATACACAGGAGCTGAATGAGCAGAGCGTGAAGAAATCTACCACTGATTCCCATGCTCCAGACCCAGTAGACAACAGGGTCTTGGAGATGCAGGATCTAACAGACCCGCAGCACTCTGTTAACAGTGGCAGTGACGGCACATCCAAACTGGACAAAAACATCCTCAGCAACAACATCACGACCAATGGAACCGgagGAGAGAACATGACAATTCTAAACACGGCTGATTGGCTGCTGGGCTGCAGTACCCCGCCCACTGCCCCAATTAAGTCTGAGCCTCTGAACAGCAGCGAGGCTGTGAGCTCGGCGGGAGACACTGGGCTGGACACTTACACTGGGTCAgtTATAAGCAGCAGTGGATTCAGCCCTCGGCCGGCTCACCAGTACTCGCCTCCTCTCTACCCCTCAAAGCCTTACCCCCACATCCTGTCTACACCCGTGGCTCCTCCCATGTCGGCCTACACAGGCCAATCACAGTTCACTAGCATGCAGCAGTCGACAGTTTACACACCCTACTCTCAAACTACTCCACCCTACGGCCTCTCCACCTATGCTACAGATTTGGGGGTGATGTTGCCAGGCATAAAGACAGAAGGAGGTCTGACACAAACGCAATCAAGCCTCCAATCAGGGCTCAACTATAGCCCTGGATTTACCACCCCTCAGCCTGGACAAACAGCATATTCACCCTATCAGATGCCAGGGTCAGGTTTCACAACATCTCCTGGTCTCTACACATCCAACAACTCTAATCCAGGCAACTTCACCACACAACAGcaGGAATATCCCTCCTATACAGCTTTTGGGCAGAATCAGTATGCTCAGTATTACTCCACCTCCTCCTACGGTTCCTACATGACATCCAACAGCTCATTGGACGGCACAGGTTCAATCTCCACCTATCAGCTGCAAGACTCCACCCCCATCATGACGGGACAATCGGCTGACCTGAATCAAGGTGAGTTTGAGGCGGGGCAGAGCCCATCTACGCCAATCAAGGAGATGGAGGACCGGGCATGTCGAGGGGGTGGGGCTAAAGCAAGGGGGCGGGGCAGAAAGAACAACCCCTCCCCACCACCTGACAGTGACCTTGAGAGGGTGTTTGTTTGGGATCTGGATGAGACCATTATTGTGTTTCACTCACTCCTCACAGGCTCCTATGCACAGAAGTACGGCAAGGACCCTCCTTTGGCTGTGACACTTGGTTTAAGAATGGAGGAGATGATTTTCAATCTTGCCGATACACATCTGTTTTTTAACGATTTAGAGGAGTGTGACCAGGTGCACATTGATGACGCCTCTTCAGATGATAACGGACAGGACCTCAGTACTTACAGTTTTGCCACTGATGGCTTCCATGCAGCTGCAACAAGTGCAAGTCTCTGCCTAGCAACAGGTGTTAGGGGCGGAGTCGACTGGATGAGGAAGTTAGCTTTCAGATACAGAAGAGTCAAAGAGTTGTACTGCACTTACAAAAACAATGTGGGAGGGTTGCTGGGACCGGCTAAGAGGGAGGCGTGGCTCCAGCTGAGGGCAGAAGTTGAGGCTCTCACGGACTCCTGGCTGACCACTGCGCTCAAGTCCCTGTCAATCATCAGCTCCAGGAGTAACTGTGTTAACGTCTTGGTGACAACGACACAGTTAATACCTGCGCTGGCTAAAGTGCTGTTGTATAGCCTGGGCTCAGCGTTTCctattgaaaacatttacagcGCAACCAAAATAGGCAAAGAGAGTTGCTTTGAGCGCGTAATGCAGAGGTTTGGCAGGAAGGTAGTGTATGTTGTAATTGGGGATGGTGTAGAAGAGGAGCAGGCCGCTGCCAAGCACAACATGCCCTTCTGGCGGATATCCAGCCACTCTGACCTGCTTGCCCTCCATCAAGCACTGGAATTTGAGTACCTGTAACGCTCAACACCTGTATCATAGGCCTTTTTGTACAACTATTTAAGAACAAGAGTACACTGCAGTCTCTTTttatgttgttgctgttgtcatcttttttgattatttttaagaaaactctggcttttaagatatttctgcACTGTCTTAAGAAGACTAGGACAGACTAGGATGAGGGAAAATGGGATTTTAATGGTCAAACCAGGCTTGTAAAGAGCTTACTAAGGTCTTACgtcacacacactgcatttcATGTCTGAATGAGAGGAGTTCTTTGTCTTGAAACCACATATATCACTCTTCTACAGGAATTACATAGACTTCATCTCCACTTAAATGACTCAAGCGCTGTACTCTAATCACGGAACATTTAGAATAGACAActcatgtaaattattttacagtaactagattaaacactaaaaaacgCTGTGTTTTCACATGGTATCGctttgattttgtgttttttgtaagtttttggcaaaaaaaagtcTGTATAATTTGTTGTGCCttataaagatgtttttgtgtgtcagtttttattttgagaatGTATGtagataaacaaatgtaaacatttga

Function

GO:

id name namespace
GO:0042472 inner ear morphogenesis biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0048923 posterior lateral line neuromast hair cell differentiation biological_process
GO:0001964 startle response biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231378 lncRNA downstream 6310 9782108 ~ 9831125 (-) True G156245
TU231365 lncRNA downstream 21941 9678261 ~ 9815494 (-) True G156235
TU231109 lncRNA downstream 224839 9612250 ~ 9612596 (-) True G156056
TU231107 lncRNA downstream 229487 9607488 ~ 9607948 (-) True G156054
TU231104 lncRNA downstream 234958 9601962 ~ 9602477 (-) True G156051
XR_006247820.1 lncRNA upstream 2136 9867920 ~ 9877168 (-) True LOC122328702
TU231404 lncRNA upstream 85359 9951143 ~ 9952031 (-) True G156261
TU231407 lncRNA upstream 150672 10016456 ~ 10017421 (-) True G156264
TU231431 lncRNA upstream 186742 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 192227 10058011 ~ 10059303 (-) True G156283
XM_043224553.1 mRNA downstream 3787 9831809 ~ 9833648 (-) True zgc:153284
XM_043224476.1 mRNA downstream 15138 9812001 ~ 9822297 (-) False lca5
XM_043224478.1 mRNA downstream 15138 9812001 ~ 9822297 (-) False lca5
XM_043224475.1 mRNA downstream 15138 9812001 ~ 9822297 (-) True lca5
XM_043224552.1 mRNA downstream 29168 9803343 ~ 9808267 (-) False hmgn3
XM_043224541.1 mRNA upstream 17653 9883437 ~ 9884854 (-) True tcf21
XM_043224506.1 mRNA upstream 43004 9908788 ~ 9917655 (-) True slc2a12
XM_043224507.1 mRNA upstream 54263 9920047 ~ 9941008 (-) True sgk1
XM_043224510.1 mRNA upstream 54263 9920047 ~ 9926170 (-) False sgk1
XM_043224509.1 mRNA upstream 54263 9920047 ~ 9926168 (-) False sgk1
TU231376 other downstream 3753 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 3802 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 29066 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 29203 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 627471 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 364762 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 371312 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 499759 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 809900 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 1234960 11100744 ~ 11105223 (-) True G156746