RNA id: XM_043224509.1


Basic Information

Item Value
RNA id XM_043224509.1
length 2382
RNA type mRNA
GC content 0.46
exon number 10
gene id sgk1
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9920047 ~ 9941008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGATATCCGGTGTCAGATCAGCCCTGATGGAATGCGGCGGATTGAGAAAATTCTTTCACCTCCAAACTTCCTCATCAAGCGTGTCCGCGGCACTTTCCTGACCGTATGAAAGACAAAACTTCTCCGCTGTCATCCTTTATGAAACAGAGAAAGATGGGACTGAATGACTTCATCCAGAAGCTTTCCACTAACTCTTATGCATGCAAGCATCCTGAGGTCCAGTCCATCTTGAACTTGACACCTCCACAAGATGCTGAGCTGATGAACAGCAACCCTTCCCCGCCGCCAAGTCCTTCTCAGCAGATAAACCTCGGCCCTTCCTCCAACCCCACTGCCAAACCGTCAGACTTCGACTTCCTTAAGGTCATTGGAAAAGGCAGCTTTGGGAAGGTTCTTCTGGCACGCCACCGGAGCGATGAGAAGTTCTATGCAGTCAAGGTGCTGCAAAAGAAAGCCATCTTGAAGAAAAAAGAGGAGAAACACATCATGTCTGAGCGCAACGTGTTACTGAAGAATGTCAAGCATCCTTTCTTGGTGGGCCTGCATTATTCATTTCAGACTGCTGATAAACTCTACTTTGTACTGGACTACATCAATGGCGGAGAGCTGTTCTATCATTTACAACGGGAGCGATGCTTTCTGGAGCCACGTGCCCGGTTCTATGCAGCCGAGATCGCGAGCGCCTTGGGGTACCTGCACTCACTGAACATAGTGTACCGAGACTTGAAGCCTGAGAACATTCTCTTGGATTCTCAAGGACACATCATCCTGACCGACTTCGGCCTGTGCAAAGAGAACATAGAACCCAATGGAACAACATCAACTTTCTGTGGAACACCAGAGTATTTGGCACCGGAGGTGTTACACAAGCAGCCGTATGATCGGACGGTGGACTGGTGGTGTTTAGGAGCAGTGCTGTATGAAATGTTATACGGCCTGCCTCCGTTCTACAGCCGCAACACAGCGGAAATGTACGATAACATTCTGAACAAGCCACTGCAGCTCAAACCCAACATATCTAACGCTGCCAGACACCTGCTGGAGGGCCTGCTGCAAAAAGACCGAACCAAGAGACTCGGCTTCACTGATGACTTTACCGAGATCAAGAACCACATGTTCTTCTCTCCCATAAACTGGGACGATCTAAATGCCAAGAAGCTCACGCCACCCTTCAACCCCAACGTGACGGGTCCTAATGACTTGCGGCACTTTGACCCCGAGTTCACCGACGAGCCGGTGCCTAATTCGATCGGCTGCTCCCCGGACAGCGCTCTAGTCACAGCCAGCATCACCGAGGCGGCTGAGGCTTTCCTAGGCTTCTCTTACGCCCCTGCCATGGATTCCTACCTGTAGTCGACGCAGAAACGCCATCCAATAGACTCTTACCTGTAGCTCATTACCATGGAAACGCTGTCCCATGGAATCACACCTGTAGTGCATCACTATGAGAAACGCAAACCCCGTCTCATTTCCCTGCCTCCAGATAGGGGGCATTTGCACATGGCGTACGGCAGCTCAAAAGGCCTTTGTTAAAAGGCCTGagttttttacacaaaaaaaaaaaaagacttgtcaTCTTCATCGACTGCATCCAAATGCACGATTTCTCCTCCGCTTTCACCCCGGGTTGTGTCAGAGAGACAGAtggggaaaaagagagagagagaggattgaTGCTGATGGAAGTTTGTTATGTACTTTTCCTTTCTTGAGATTTATTTCCAgcttatttacttttatagGATTGTCAGTGCTAGACTTCATTGTTTTGGATGGATTggatgtgtgtgcgcgtgccTTCGATTAACACCCCTTCACACATGTTTGCTTAATCTAAATCATGTGATCTGGCACGTCAGTCTGTGTCGGATATAAATACAGTCAACGTGACGCTAAAACCACTAAACTATATCAGCATCTGATGTTTTTGTGATCTTTCAGTTGCGCATCTGGGATCAAGTTGCACATTTATCTTCCTAATTTAAAGAGCACTTCCTCTTTTGCGTTATTCTTGTTCTTTTGATTCAAGTGGAAGGTGCTAGAGGGATGTGCTGCTAATGTGTGTAGATACGCACTCGGACCAAGGAATCAGACGCCTCTGTTTTACCTTAGTCTTCCAGCCTCCTAGGATGTACAGTAATCGTACAGCTCAGAAATGGGCCAGTTTGTCTGAACATCACATTCCATGGAATATGACTGTATGATTATTTaagtttgtttgtatattttaaggTCTATGTATTAGTTTTAATGTATATGGAACAAAAACTTAAGGTATGCTTATGTGTAactataaatgtactgtaaaattgtaaaatgtttgaatCATGTGACCTTGTTTGGTTCGCAATAAAACTTTATGGTTATTTTTCCCCAAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247820.1 lncRNA downstream 42879 9867920 ~ 9877168 (-) True LOC122328702
TU231378 lncRNA downstream 88922 9782108 ~ 9831125 (-) True G156245
TU231365 lncRNA downstream 104553 9678261 ~ 9815494 (-) True G156235
TU231109 lncRNA downstream 307451 9612250 ~ 9612596 (-) True G156056
TU231107 lncRNA downstream 312099 9607488 ~ 9607948 (-) True G156054
TU231404 lncRNA upstream 24975 9951143 ~ 9952031 (-) True G156261
TU231407 lncRNA upstream 90288 10016456 ~ 10017421 (-) True G156264
TU231431 lncRNA upstream 126358 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 131843 10058011 ~ 10059303 (-) True G156283
TU231491 lncRNA upstream 186449 10112617 ~ 10115673 (-) False G156313
XM_043224506.1 mRNA downstream 2392 9908788 ~ 9917655 (-) True slc2a12
XM_043224541.1 mRNA downstream 35193 9883437 ~ 9884854 (-) True tcf21
XM_043224500.1 mRNA downstream 54265 9837435 ~ 9865782 (-) False eya4
XM_043224518.1 mRNA upstream 36826 9962994 ~ 9968091 (-) True aldh8a1
XM_043224485.1 mRNA upstream 45334 9971502 ~ 9994574 (-) False hbs1l
XM_043224484.1 mRNA upstream 45334 9971502 ~ 9991999 (-) True hbs1l
XM_043224487.1 mRNA upstream 60338 9986506 ~ 9992002 (-) False hbs1l
XM_043224534.1 mRNA upstream 106369 10032537 ~ 10037756 (-) False mtfr2
TU231376 other downstream 86365 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 86414 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 111678 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 111815 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 710083 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 304378 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 310928 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 439375 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 749516 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 1174576 11100744 ~ 11105223 (-) True G156746

Expression Profile