RNA id: XM_043224524.1


Basic Information

Item Value
RNA id XM_043224524.1
length 2017
RNA type mRNA
GC content 0.45
exon number 8
gene id tamalin
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10162782 ~ 10176042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCGTCCGCAGATGCTGCTGTTGATACTAAGCTAGAGCTGGGGGTTATTGCACAAGTCGGAGTGCTGGCTGGTGGCGAGTGGGTGGCTTTTCACCCACACTCAGTACTTTTTATCTCTCGCTCTTCTTTCATGTACTGTTGCGTTCTTATCGAGTGACACGCGGACTATGAAAAATATGACTTTCCGACGTGTAAAGAAGCTGAACTCGAGCGAGCCGGACAGCGGGTCGCTGTGTCATGACAGTACGGAGATCTACTTTGCGTCCTCCAAATCGGACAGCTGTGGGACCGTGGACCGAGGAAACTCCACTGAGGTTTATAATTATAAGACTCTCGCTTACTCTGGAGGGACCCTACCGAGGAACTTTAAAAAGAATGGTGGGCTGCAAAAATGGAAGCCCCTCTCACACTCTCCAGAACCGCTAAGAAAAACAGTGATCCTGatgaagaaagaggaagaggccTTTGGCTTTGAGATCCAGACATATGGGCTGCATCACCAGAGTGAGAACTCGGTGGAGATGTGCACCTTTGTTTGCAAAGTCCATGAAGACAGTCCTGCCCAACTTGCAGGACTTAAAGTCGGAGACACGATTGCCAGCGTGAATGACACTTCTGTGGACGGCTTTCGCCATAAAGAAATCGTCCAGCTCATTAAATCATCAGGCAACAGCATTAGGCTAGAAACTGTGTATAGCGACTCTATACGAAAAGCAGAATTGGAAGCTCGGCTGCAGTATCTAAAGCAAACCTTGCATGAGAAATGGGATGAATACAGATCTCTAATGGTGCAGGAGCAGCGGCTTGTGCATGGCATCGTCATGAGTGATGTGGCGGTGTACGAGTCTCTGGAGTCCGCCGGGTTATACGGTAGTCTGGGAGCTCCGAGCCCTGCTGCCATGCGCGCGTTACGTGGCACTGAGAGCACGAGCAGCAGCGTCAGCCATCTTAGTGCTGCCACAACTGAGGACGACCCCCTCTACCAAACCTGCATCTTCCAGGGGGAGCGTTCCAGCAACGACGAGCTTGACGCCAAACAAGAGAAGACTCAAAGCGGCCGTCCGCGGCTCATTCGTCCTGCCAGCGAGCTCTTCACTACTGCCAAGACCACCCTGACCCGCAGCGCCAGCACACGCAGTTACCTGAGGGGCCAGCCGCCGTCGTCCTCGGTGCCTAACGGAGAGAAACAGCAGTGCGGCGGGTTCAGCACACTGCAGCGCAAACCCAAACAGAAGAGCTTCAGGCGGAGGCTGTTGAAGTACATTCCCGGACTCAACCGACCCCTGGAAGAAGAGGAAAGCAAACTGTGAGAAACAAAAGCGAACTGAGAATTCAAAGACTCCCTTTGCCAAAGACTAAATGTTTAAAACGAGCGAAAAGGAAACCGAAGACCAAAAGTGGACGCCAAGATAAACCAAAGAAAAATCCAGTGATTATAAAAGTgttgttttctgagaaaaattAAGAGCCTTTTTGGTCAAGTTGGTAAATGACTAATTGGCTAAAGATTGGTTGGGCaactttaaatattagttttagaCTTGAAGTATTAAGATTAGTCTAAAATGCTGAGAATATGTGGATGTCTGTTTGTCGCTggaatattgtttaaaaatctgtaacataatataaaaattaacaagTTAACGAGCCCAAAAAATGTGGACCAGCGTGTCTTAATGACTTTGTCAACTCCTTTAACTAGTTTATTAACATGGTCTAACTTTATTTCCTGGTGCACATTTTGCATCTAATTCAAGAAGCAaacatttgtacatattttgttcatgtttaagttatttatttaatgttttgtttgtttgttttttttcccttttttgtaattttgttaattgaaGATGTACAaaatgaaggattttttttagcaaaatactTTGGTCCTGAAGGATATTTAAGTGCCTTTtttggcatgtgtgtgtgtaaataactttttgttttttgtgtgaaaaatgtaGATTGAAAATAAAGGATGGTATTTTTCCTCAGGTTCTTTAA

Function

GO: NA

KEGG:

id description
K24053 GRASP; general receptor for phosphoinositides 1-associated scaffold protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231490 lncRNA downstream 45827 10114097 ~ 10116955 (-) True G156313
TU231487 lncRNA downstream 45827 10115784 ~ 10116955 (-) False G156313
TU231492 lncRNA downstream 45827 10115784 ~ 10116955 (-) False G156313
TU231491 lncRNA downstream 47109 10112617 ~ 10115673 (-) False G156313
TU231439 lncRNA downstream 103479 10058011 ~ 10059303 (-) True G156283
TU231500 lncRNA upstream 42447 10218489 ~ 10385967 (-) False ankrd52a
XR_006247790.1 lncRNA upstream 115423 10291465 ~ 10294043 (-) True LOC122328389
TU231535 lncRNA upstream 172099 10348141 ~ 10351881 (-) True G156341
TU231551 lncRNA upstream 179912 10355954 ~ 10357617 (-) False LOC122329224
TU231559 lncRNA upstream 210912 10386954 ~ 10387496 (-) False G156364
XM_043224513.1 mRNA downstream 17330 10140150 ~ 10145452 (-) True nr4a1
XM_043224550.1 mRNA downstream 30623 10131006 ~ 10132159 (-) True rprm3
XM_043224529.1 mRNA downstream 41414 10117064 ~ 10121368 (-) True letmd1
XM_043224530.1 mRNA downstream 41416 10118002 ~ 10121366 (-) False letmd1
XM_043224528.1 mRNA downstream 41418 10117064 ~ 10121364 (-) False letmd1
XM_043224480.1 mRNA upstream 1144 10177186 ~ 10202807 (-) True dgkaa
XM_043224535.1 mRNA upstream 27997 10204039 ~ 10212427 (-) True rnf41
XM_043224554.1 mRNA upstream 42431 10218473 ~ 10239284 (-) True ankrd52a
XM_043224696.1 mRNA upstream 67886 10243928 ~ 10280539 (-) False LOC122328770
XM_043224693.1 mRNA upstream 67886 10243928 ~ 10280531 (-) False LOC122328770
TU231376 other downstream 329100 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 329149 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 354413 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 354550 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 952818 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 54504 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 61054 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 189501 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 499642 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 924702 11100744 ~ 11105223 (-) True G156746

Expression Profile