RNA id: XM_043224529.1


Basic Information

Item Value
RNA id XM_043224529.1
length 2003
RNA type mRNA
GC content 0.42
exon number 9
gene id letmd1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10117064 ~ 10121368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGAAGACACGCCCATGTAGAGCTGTTAGCCGTTCAATCCAAGATGGCGCTGTCCTGTGGAGGGGTATGCCGCGGGGCTTCATTGATCTTACTGTTCGGAAAACGACCTGTCGGGGTCAAAGCAAGTCTCTGTACATCTAGACTAGCTCCCACAAAACACAGTTTGTGGTTTGTTAGGCACTACTCTCCTTCACAAGCCAGGCATGGGATTGGTCGAAGCGTCGTGTCCAGTCTGAAATGGGCAAACGAGAGATATGAGAGATTCCTGCAACGTCGTTTTCCACGATTTTACGTTCTCTACCAAACTTTTATGAAAGGTTTCCGGCTCCTGTTTCAAGATGGTAAAGAAGTAGGAAGAATCACAGCCCGCATGCTCAGTGAAAGAATAGAGCACCAGAATTTGCCTTACCGTGATATGGAGAAAATCAGACAGgtACGCAGGGACTTAATCAAAGCCATTCCACTTGTCATCTTATCAGTACCTCCTTTTGCCAACTATGTGGTCTTCATCCTTATGTACCTCTACCCTCGCCAGCTTCTGATCCGGCACTTCTGGACTCCACAGCAGCTGGTAGAGTTTCAGAGGGTGTATCATACCCAGAGAGCCCAGCACCACTGGGCTATAGTCAAAGGGATGGAAAACACGTCAACATTGGTCCAAGACAGCCGACTCAAGAGCCGCCTTTCAGAGCTCTGCAGTAAGGTCAAAAGTGGAGTCCATCCTGTGGTGTCTGATGTCCATGCAGTGAGAACTTTGTTTTCTGGACCTCCTTTGGGTATTAACAGAATGTATGCAGATCAGAAGAGACACCTCTGTTCTTTGCTCTTTCTGACGCCCCGCCTCCCGGGCTTCTGGATTGGTCGACGCTTGAACAACCACGCCTTAGAACTCATGCAGCTTGACCGTGCCATTGTTCGATTAGGATTGCATCAGTTGAACGACACAGAGCTCAGAGAGGCATGTTATGTGAGAGGGCTGAATCCAGGCTGCCTGAGTCCAGGACAGTGCCGGGAATGGCTCACACAGTGGTTGCAGTTCTCAACACACCTCAAAGAGTCTGAGACCTCCCTCTATCTTCACTGTATGGTACTGCTAACTGTAAACTTCCCTAAACACCCACGTCACTGACCTCTGGAGGAAGTAGATGACTTCTCTTCTCAACGCCCACCACACCCAAAGGCAAAACACGACGGGAATTAAAAGGGGCTGTCAtgatttaaatgtgtttcttgttttttcctATATAGACAGGGTGTCTAACTAATGATGTACATTTACACTGGGTTCTACTTTCTAACCATATCTGAGACAAAAAGCACACTGAACATATACCAAATGCATCCATTTGGAATTAAACCTCATTGGTCTTGtactgaaacattttcattcagaatatTTATTGTACCATCAACAGTTGTTCATGCAGTTATTTGTCAGTAGCATTTTGTACCTTTGTTTAAAACCTGCACTGACAAGtatcacattcatttttttattttctctcagaTTGTTTTACTATAGAtatccatttttttatgtttcaaatcTGATGTCAAAACTTAAGAGGTTTACAgttctttataaaaatgaagtgtATTCCTTAATGTTATTAAGCTATGTTTATAATGCAgcatatacttattttaattacatttatttataagttcTAAAGAAACAATATTGCACCTTGTTCCTGTCTTATCCAATAAGTTGTTTGCTGTAAGCTCTGGGCTGTTTGGTCATAGCATTTATGTTATGCTACATGAGTCTTGTCAAGTTCTGAAAACTTGCTCTTACTATTCAGCCTTTTAGCTGGTGCCTTTTACTTAAGAACACAGATATAAATGAGGTGCATTCAAGCTGTTCTTTCTATATGTTGCCAAATGAgttgcattattttgtttttatataaaaaggcaATGCTGTTTGGTTTGGTGTTAAAGTACATATTCAATGGAATATGAAAAGATTGCAACTTCTAttaaacaaattcaaatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231490 lncRNA downstream 109 10114097 ~ 10116955 (-) True G156313
TU231487 lncRNA downstream 109 10115784 ~ 10116955 (-) False G156313
TU231492 lncRNA downstream 109 10115784 ~ 10116955 (-) False G156313
TU231491 lncRNA downstream 1391 10112617 ~ 10115673 (-) False G156313
TU231439 lncRNA downstream 57761 10058011 ~ 10059303 (-) True G156283
TU231500 lncRNA upstream 97121 10218489 ~ 10385967 (-) False ankrd52a
XR_006247790.1 lncRNA upstream 170097 10291465 ~ 10294043 (-) True LOC122328389
TU231535 lncRNA upstream 226773 10348141 ~ 10351881 (-) True G156341
TU231551 lncRNA upstream 234586 10355954 ~ 10357617 (-) False LOC122329224
TU231559 lncRNA upstream 265586 10386954 ~ 10387496 (-) False G156364
XM_043224546.1 mRNA downstream 54066 10059991 ~ 10062998 (-) True ormdl2
XM_043224473.1 mRNA downstream 67150 10041448 ~ 10049914 (-) False nlrp12l
XM_043224470.1 mRNA downstream 67802 10041448 ~ 10049262 (-) True nlrp12l
XM_043224472.1 mRNA downstream 67812 10041448 ~ 10049252 (-) False nlrp12l
XM_043224471.1 mRNA downstream 67837 10041448 ~ 10049227 (-) False nlrp12l
XM_043224550.1 mRNA upstream 9638 10131006 ~ 10132159 (-) True rprm3
XM_043224513.1 mRNA upstream 18782 10140150 ~ 10145452 (-) True nr4a1
XM_043224524.1 mRNA upstream 41414 10162782 ~ 10176042 (-) True tamalin
XM_043224480.1 mRNA upstream 55818 10177186 ~ 10202807 (-) True dgkaa
XM_043224535.1 mRNA upstream 82671 10204039 ~ 10212427 (-) True rnf41
TU231376 other downstream 283382 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 283431 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 308695 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 308832 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 907100 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 109178 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 115728 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 244175 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 554316 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 979376 11100744 ~ 11105223 (-) True G156746

Expression Profile