RNA id: XM_043224531.1


Basic Information

Item Value
RNA id XM_043224531.1
length 2030
RNA type mRNA
GC content 0.46
exon number 9
gene id mtfr2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10032537 ~ 10039425 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCTGTGTTTGAGAAGTCAACACACCATACACCTCTTCTGCAAGTGTCTCCAGGCTGACCATCATGCCAAGCTCATTTTTCATGGTGTTGATGTTGCGGGGTGATTCAGCCAGGTACCGCAAAGCCTTAAGAGGTCACGTGGAGAAGTTTGGTGCAGTGTGTTGTTGGCTCATCTGTCAGCAGAAATCCAGCGAACGCTGTCAATGTCTCTACTGGAGGACATCGCTGACCTGCTGAGATGTGTTCTGGAATATTTTGGAGTGCCACCTGACATGCTGGTTCCAGTATGGGACAGTACATATTGTGGACAATACCGAAGCATAGTCCGTATGATTGGGACCAACCTTCCCCTCTCTCCTCAGCCTCGACTGCGCTTTCAGATTCCTCTGCAGACATTCAGTAGACACGGCCATATTGATGTGACAGTGGACACGCCAGTCATTCCTACATTAGCGGATGTGCTTTGGCTGGTGGAGGATGAAGGGGACAGTCACACTAAATTCAGGAATGCTGTCCCTTTGAGGAAAGCTTTTGAGATGCCTTTATTGGGGTCTGAACATCCGGTGTCCGTGTCTGTCCCGGCTCAGAGGGGAGGCGGGGTGCTGGGACAGGGCACTCAGCCAGAGGCCCTACAGAAGATCTCAGCTCTGGAAGAGGAACTGCAGAGACTGCGAGCACAGATTGCTATGATAGTCACAGCTCCAGCTGTCCCATCCATATTTCCAGCTGATCCTGGCACTCCATGCTGTACTCCTCTTCCAGTTCCTGTCCTCACCTCCACTCCGGTCTGTCCTCCGCTGccaccaccacctccaccaccacctccaccaCCACTACCTCCTCCGGCTACAGGCAGCTGCGTGGAGGTGTCAGTGTCTGATGTGATTAGACAAAGACAGGcagcaaaaagagaaaagcttGCACAGAGCGATCCGTCTGTGTCTACAGCGCCTGCTGCAGGGCCCTCGATGTTAGAGGTGCTCAAAGACCTGAATCAAGTCAAACTGCGTTCTGTGGAGAGATCTCCAGGTGGAACTCCAGTAAGGAGGCGGAGGAGTAAAGGTGTAGCATGTTCATCTGATCCGGCAGCTCTTATCGCCGAAGCCCTGAAAAGGAAGTTTGCGCACAAACTCAGGGACGATTCATTTGGTAAAGAGAACTGCTCGGCTGAACCCTCACCTTTCAGCAGTCCAGATACTCCCAGGATTCTCCCTCACACCAGACGCAGCCAGGGGCGCATTCACCTTTGACCCTCAACCTTAAAGTCTTTCAGGGACAAAGTTGTGTCATGGACTGATGTGACAGacctattctttttttttttaatgtttgtttcacTGTCTCTCTTTGCCTTtcccctttctctctctaaaTGAATCACTTGGGCCTCCATCTGAGTACactgtgcatgttttttgagatttttgagCAGAcctcatcattttttttgtatgtacagatttttatttgttaatattgtgtACAATGGACAATTGTAAATGACTACGACTATTGATACAGGATGGCAATAATTATCTCATAGGATGCTACAGTTAATTTCTTTCAGTTACCAATGTAGTACATTAATAAGGTCTGATCTATgcaatgctgctttttttacacagtttgttgttttggtttttttgtttgtttttaaaacctcaatcaggggtgtcaaactgAGCTCCTGGAGAGCCCTGCTGGGTTGACTTCCAACTCCGCTCCAACACACATGCGCAGGGCTATAGTAAAGAGCGGTACTTAGTTTGCTAATAATGTGTACATCCATGTTTCTCCTGTGTTATCATCCTCTTCTACAAAGTGCTAATGCAGTATCGCattcaaaagcaataaaaaagttataagcctttcaaatgtattcaaaGTGTGTGCTATTgcataatacaatttattatacagttctctggaatacttgattctgactGGTTagtcatttgtttaaataaaaaaacttcatCCCCTAACACTAGCACTCTTCATTaattatctataaataaatcCTGCATC

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231407 lncRNA downstream 15117 10016456 ~ 10017421 (-) True G156264
TU231404 lncRNA downstream 80507 9951143 ~ 9952031 (-) True G156261
XR_006247820.1 lncRNA downstream 155370 9867920 ~ 9877168 (-) True LOC122328702
TU231378 lncRNA downstream 201413 9782108 ~ 9831125 (-) True G156245
TU231365 lncRNA downstream 217044 9678261 ~ 9815494 (-) True G156235
TU231431 lncRNA upstream 13101 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 18586 10058011 ~ 10059303 (-) True G156283
TU231491 lncRNA upstream 73192 10112617 ~ 10115673 (-) False G156313
TU231490 lncRNA upstream 74672 10114097 ~ 10116955 (-) True G156313
TU231487 lncRNA upstream 76359 10115784 ~ 10116955 (-) False G156313
XM_043224485.1 mRNA downstream 37964 9971502 ~ 9994574 (-) False hbs1l
XM_043224487.1 mRNA downstream 40536 9986506 ~ 9992002 (-) False hbs1l
XM_043224484.1 mRNA downstream 40539 9971502 ~ 9991999 (-) True hbs1l
XM_043224518.1 mRNA downstream 64447 9962994 ~ 9968091 (-) True aldh8a1
XM_043224509.1 mRNA downstream 106370 9920047 ~ 9926168 (-) False sgk1
XM_043224473.1 mRNA upstream 2023 10041448 ~ 10049914 (-) False nlrp12l
XM_043224470.1 mRNA upstream 2023 10041448 ~ 10049262 (-) True nlrp12l
XM_043224472.1 mRNA upstream 2023 10041448 ~ 10049252 (-) False nlrp12l
XM_043224471.1 mRNA upstream 2023 10041448 ~ 10049227 (-) False nlrp12l
XM_043224546.1 mRNA upstream 20566 10059991 ~ 10062998 (-) True ormdl2
TU231376 other downstream 198856 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 198905 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 224169 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 224306 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 822574 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 191121 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 197671 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 326118 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 636259 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 1061319 11100744 ~ 11105223 (-) True G156746

Expression Profile