RNA id: XM_043224546.1


Basic Information

Item Value
RNA id XM_043224546.1
length 1132
RNA type mRNA
GC content 0.42
exon number 4
gene id ormdl2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10059991 ~ 10062998 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGGTTTTCAAACACGGCCGCAGACTGTCTATTTCCTGGTTACTTCGCAAGGATGAATGTGGGCGTTGCTCACAGCGAGGTGAACCCAAACACCCGGGTGATGAACAGCCGGGGCATCTGGCTGGCCTACCTGCTGCTCACCACCGCCCTGCATGTGGTCCTGCTCAGCATCCCTTTCCTCAGTGTGCCTGTGGTGTGGACGCTTACCAATGTCATACACAACCTGGCAATGTATCTGTTTTTACACACAGTCAAAGGCACGCCGTTTGAGACGCCGGACCAAGGCAAGGCACGTTTGCTCACTCACTGGGAACAGATGGACTATGGCGTCCAGTTTACAGCGTCAAGAAAGTTCCTCACCATCTCACCTATTGTATTgtACATCTTGGCCAGCTTCTACACTAAATATGATACAACTCACTTCATAGTCAACACAGGTTCACTACTAAGTGTCCTCCTTCCCAAGTTGCCTCAGTTTCATGGAGTTCGTCTGTttggtataaataaatactgatatGACACTTCAGGCCACTCTAGGATGGGATGTAGCATCAtggagatgagatgagatgactGAAATTCCTTTAATCTCCATTTGATGCTTCCTTGGTCCAAAGCCGTAAAGGCCTTAAGGAACCAAAACTGCACTGGACTAAAgtacactatttaaaaaaggcctTCCATGCTCAGGTTTATTCAATCTGTggcgtttctttttttaaatcctgtCTTATGTCTGTCATTTCTCTATATCGTAATCTCTAGATCTCCATTTATAATTTCTAGTTTCATCACATTCAAGGATGTTTTTGACTGCATTGCACCAGACAATGTGCCAGTTATCACCTGCTGATATTCTTTGCATAAACCTATTTGCCACAACAAGCTCCGTCACTGTGGGGGCAAAACATGATAGTTCTGAATTATAATATTCAGAGGGCTTTTGTCAGTGTTCTAGTATGCAACATGGACAACTGAAGTAAATACGTTatgttgaattattagaaaaactgattttgattttaatctgaactgcatttttaattacatttccttcaaaaatgcaaaacaatgatCTGTGACAATGTATAAACGTGATATGATAAACAATTTTGAAGCGCTCCCTTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231439 lncRNA downstream 688 10058011 ~ 10059303 (-) True G156283
TU231431 lncRNA downstream 6442 10052526 ~ 10053549 (-) True G156278
TU231407 lncRNA downstream 42570 10016456 ~ 10017421 (-) True G156264
TU231404 lncRNA downstream 107960 9951143 ~ 9952031 (-) True G156261
XR_006247820.1 lncRNA downstream 182823 9867920 ~ 9877168 (-) True LOC122328702
TU231491 lncRNA upstream 49619 10112617 ~ 10115673 (-) False G156313
TU231490 lncRNA upstream 51099 10114097 ~ 10116955 (-) True G156313
TU231487 lncRNA upstream 52786 10115784 ~ 10116955 (-) False G156313
TU231492 lncRNA upstream 52786 10115784 ~ 10116955 (-) False G156313
TU231500 lncRNA upstream 155491 10218489 ~ 10385967 (-) False ankrd52a
XM_043224473.1 mRNA downstream 10077 10041448 ~ 10049914 (-) False nlrp12l
XM_043224470.1 mRNA downstream 10729 10041448 ~ 10049262 (-) True nlrp12l
XM_043224472.1 mRNA downstream 10739 10041448 ~ 10049252 (-) False nlrp12l
XM_043224471.1 mRNA downstream 10764 10041448 ~ 10049227 (-) False nlrp12l
XM_043224531.1 mRNA downstream 20566 10032538 ~ 10039425 (-) True mtfr2
XM_043224529.1 mRNA upstream 54066 10117064 ~ 10121368 (-) True letmd1
XM_043224528.1 mRNA upstream 54066 10117064 ~ 10121364 (-) False letmd1
XM_043224530.1 mRNA upstream 55004 10118002 ~ 10121366 (-) False letmd1
XM_043224550.1 mRNA upstream 68008 10131006 ~ 10132159 (-) True rprm3
XM_043224513.1 mRNA upstream 77152 10140150 ~ 10145452 (-) True nr4a1
TU231376 other downstream 226309 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 226358 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 251622 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 251759 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 850027 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 167548 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 174098 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 302545 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 612686 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 1037746 11100744 ~ 11105223 (-) True G156746

Expression Profile