RNA id: XM_043224558.1


Basic Information

Item Value
RNA id XM_043224558.1
length 3868
RNA type mRNA
GC content 0.46
exon number 9
gene id pax7b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12252725 ~ 12311254 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCGCGACACCCCTCCTACACCGCGCGCTAAAGTTATCCACTTCAACTACTCCCAACCCCTAAGCAGACTTTGTCATCCAAAACTATCAGACCTTTTAAGAAAACACTGCAAAGAATTAAGTAACCTTTGTTCACTCGAGAGCGTTTGGAGTACCCCCTCCCCGGCGCGCGCTGCATCTTGTTCCCGCGGTCGTTCTTTCGCTCATGACCCCCTCCGCACAAAACGACGGTGTTTatctttgtttgattttttggAGGTTTCGCGTCCCCGCGGTAGTGTGGCTGGataacgtttttttatttccccCTTTTTTCGAAAAGAGGACTTTCAAGCGAATTTTAGCCATTTAGGAAACATCCATCAACAAGTCTGGACTTGCTTTCGCATTTTAAACATCAGCCTTATTGTGCCTCGTCAATTATTAAAAGTAGAATGTCATCTTTACCGGGAACAGTACCCCGAATGATGCGACCGGCTCCGGGACAGAACTATCCGCGCACTGGATTCCCCTTGGAAGGTTGGTTGGACGGATATCAGGTTTCAACTCCTCTGGGTCAAGGTCGAGTCAATCAGCTTGGCGGAGTTTTCATCAACGGTAGGCCTTTGCCAAATCATATCCGCCACAAAATAGTTGAAATGGCTCACCACGGCATCCGTCCCTGCGTGATCTCCCGACAACTTCGCGTTTCCCACGGCTGCGTGTCCAAAATCCTCTGCCGGTATCAGGAAACGGGCTCGATCCGTCCCGGAGCAATAGGAGGAAGCAAACCCAGACAGGTGGCAACACCTGACGTGGAGAAACGGATCGAAGAATACAAGCGCGACAACCCCGGCATGTTCAGCTGGGAGATTCGGGATAAACTGCTGAAGGACGGGGTGTGTGACAGAAGCACAGTTCCCTCAGGTGAGGCCTCTTCTGTAAGCTCTATCAGTCGGGTTCTTCGTGCGCGATTTGGCAAAAAAGACGACGAGGAGGACTGTGACAAAAAGGATGACAGCGGGGAGAAAAAAACTAAGCACAGCATCGACGGCATACTGGGAGACAAAGGTCGAATGGACGATGGCTCGGACGTGGAGTCTGAACCAGACCTGCCCTTGAAGAGGAAGCAGAGGCGCAGTCGGACCACCTTTACAGCCGAGCAGCTGGAAGAGCTGGAGAAGGCCTTCGAAAGGACACACTACCCAGACATCTACACCAGAGAGGAACTAGCCCAGAGAACCAAGCTCACTGAGGCCAGAGTACAGGTTTGGTTCAGCAATCGTCGAGCAAGGTGGCGTAAACAAGCCGGAGCCAATCAACTGGCAGCATTTAACCACCTGTTACCTGGAGGGTTTCCACCCACAGGGATGCCCACTTTACCAACATACCAGCTTCCCGAGTCCACCTATCCTTCAACAACATTACCACAAGACGGCAGTGGCACTGTGCATCGGCCCCAGCCGTTGCCCCCCTCCACCATGCACCAGGGCGGGCTTTCGAGCGACAGCAGCTCCGCCTACGGCCTCTCGTCCAACCGCCACAGTTTCTCCAGCTACACCGACACCTTCATGAGCCAGTCAGCGAGCAGTAATCACATGAATCCCGTGAGCAATGGACTATCTCCACAGGTGATGAGCATCCTCAGCAACCCCAGCGCCGTGGCCCCTCAGCCCCAGCACGAGTTCTCCATCTCCCCCCTGCACAGCAGCCTGGAGGCCTCCAACCCCATCTCAGCCAGCTGCAGCCAGCGCTCTGAGCCTATCAAGACCGCTGACAGCCTGCCCTCCTCCCAGTCCTACTGCCCCCCTACGTACAGCACCACCAGCTACAGCGTGGACCCCGTCACTGCGGGCTACCAGTACAGTCAGTACGGCCAGACTGCGGTGGATTACCTGGCTAAGAATGTGAGCTTGTCCACGCAGAGAAGGATGAAGCTCGGCGAGCACTCGGCTGTGCTCGGACTGCTACAGGTGGAGACGGGACAGGCGTATTGATGGATCTCGAACTGAACATCCACTCATCTGTTTCACCAGCATCCCTCCATTCTTTCTGCAGCGCCCACACGTGGTCCATCTGACCGGGAGTGAATGAGACCAAGAGAAGTAACAAAATCACGGGCAGTCTTAGACTTTCTACCTATAGCAGCGTGAATACAAAAGCCAttccacataaaaaaaacagacactaTTGTGCCGCCTCTCCTTACTCGTCCCgatcctttctctctttcacaacAAAGAGACCCTTTCAGGGCTTCAGAAAGAAGCTGAGGGAAAATGAGCATCAATTGTCTGAGCCCAAATCACTAAAGCCCTGCCCGTTGTCGGCATCCAGTGTTAGCACACATAGGCTACAGCTGCAGCCCTTGCCCATTCCAAACTGTTCGGACCATGTTGTTTATAGAAAATGAtggtattataattatatttgttatgaTAAATGTGGTTGTTCCTATTGCTGTTGCATTTACTATTGTAATTActctttgtttacatgtttcatttttgtttttcctcacgTTTAGTTCCTGTTTCTATTTTAACCACAGGGCCTTGctttgtaacattacatttCTGATGGATATATACACAGAGAGATGCTGACATTCCACAAAACCTGGGCTAGTCAATGTTTTTCATCTTGGGTCGGTTGGTGGAGCCTTAATATGGGGCAAAAAAGTCTGTGACCTGCTCTATATGGGGTAGAAAGTGTTTAGGgttatcagtgttatttatgataattatgtCTTACGAAAACATACACTGTTCTGAAATATGCTGaccaaatgacaaaaatacattgttttcattgttttttttgcaatgaacACAGGCTAATTCTTGTCTGTGGTCACTATAATTACCACTATAACGAGCCCTTATGGGTAAATggcaatttttgcattttatggcTTTTGATATGCTTTCCCAGGCTTCTTTGCTATTCATGGAAAGTATAGTTTACGATTTATCCAAGAATTTAAAAACAGTCAGATATTAACCACTGAATGGCCAAAGGGCGATTTGTGAACTTATGTTTCAGATATTTGGAAGACGATGTACTAAATTTGGtagcactttttttattcatgaggaAATTAATTTGTCTCTGTGGtcaatgtaaaatgatttttttttttgcagtttatagACAGAAGCGGACTTTTACTGCAAGTCTTATGCCATTTACATAGCTTAAAAAAGTGCGATGGTCTCTGAATAATtgtcttgaagaaaaaaaaaatctccaaaaCATTACAGTGAGAGGTGGAATATATGACCACATTTATGGATTctgtgtttacatttacattccaCTTTTCTCAAGCGTGTTTTTAACCTCGAGAGACAATTTCTGTGGCTAAGATGAACTGAAACTAAACTGTGCTCCAGTGTGCCCTAAAACGccatatatatattcaggaCAATAACTGAAACATGAACACGTGATCGTGTGCCAACTTAAGACTGAGGACATTTCCATTTTAACACTTACGATATTTTGTAgtaaatgaaaaagacaaaaaagaaatgtgaaaaaaaaaaaaatcatgtttttagtgTGTAGCACTCATTTCTACTGCAAGCATTAATCTACCTTTGGGATGTTTGAAGCACTATCCGACTGGGCGATACACCTTTCCCAAATCTCTTTTCAACCTCAGTTGCTCTTTATTCTTTCATTGTTTACCTTTTGCGCATATGtaattttctttgatatatttctgttcagcatgtgtgtatattatcATGGCATAATTTATTCAGCTGTATGAAATACTAGCGTAGTGGGAACTTGTATTGGCATTTACTACCTTCAGCCTGTTGGTGTCTTTACTGTAGCACTGGCATATCTGTTATGGATTAAAGCTCAAAAAGTGGACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09381 PAX3_7; paired box protein 3/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232604 lncRNA upstream 9517 12246217 ~ 12251978 (+) False LOC122328708
TU232614 lncRNA upstream 15394 12245874 ~ 12246101 (+) True G157081
TU232612 lncRNA upstream 20094 12239849 ~ 12241401 (+) True G157079
TU232392 lncRNA upstream 56100 12204256 ~ 12205395 (+) True G156931
TU232617 lncRNA downstream 41836 12353090 ~ 12386381 (+) False G157084
TU232620 lncRNA downstream 50219 12361473 ~ 12386381 (+) True G157084
TU232621 lncRNA downstream 50441 12361695 ~ 12386381 (+) False G157084
TU232866 lncRNA downstream 417790 12729044 ~ 12787715 (+) True G157265
TU232925 lncRNA downstream 541987 12853241 ~ 12853832 (+) True G157294
XM_043224564.1 mRNA upstream 9513 12246193 ~ 12251982 (+) True LOC122328708
XM_043225454.1 mRNA upstream 25518 12229968 ~ 12235977 (+) False zgc:154075
XM_043224684.1 mRNA downstream 21352 12332606 ~ 12384111 (+) False kcnab2b
XM_043224683.1 mRNA downstream 24867 12336121 ~ 12384111 (+) False kcnab2b
XM_043224685.1 mRNA downstream 24867 12336121 ~ 12384111 (+) False kcnab2b
XM_043224679.1 mRNA downstream 31327 12342581 ~ 12384111 (+) False kcnab2b
XM_043224677.1 mRNA downstream 33794 12345048 ~ 12384111 (+) False kcnab2b
unassigned_transcript_2622 other upstream 742959 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 745624 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 747649 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 748797 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1084462 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1743110 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1745431 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 1988447 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2372736 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2400893 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile