RNA id: XM_043224571.1


Basic Information

Item Value
RNA id XM_043224571.1
length 4295
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC122328712
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7822122 ~ 7832584 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGAAGCGCAGCTGATGTGTGTGATTCTCTGTCAGACGCGATTGTGTTTCGGATCTTCCTGTGTTTCGGTGGAAATCGGTGAGATATTTTGAGCATATGATTTCATCCGTACGTGTTGATGACAGAACCGCCTTTATCTTTTATTCATTCGTGCGGACCGCAGAGATTTGCACCGGGACTGACATTATGCGCTCGGTAACCGGGTGATGCTGATGCTGACATCTTCCATCATCCATCTGCTTTAACGGAACTACCGCGCTCATTCCCGATCCATTCATCTCGCAGACGGCTTCGACATGTCCATGAAAGCGAAAAACGGAGAAACGGTGAAGGTGGTGGTTCGGTGTCGCCCGCTCAACCGTAAAGAGGAATCGATGGGGTACGAGAATATCGTGCAGATGGATGTGAAACTGGGCCAGGTGGCCCTGCGGAACCCCAAGGCGGGTCTGGGAGAGCTGCTCAAGACCTTCACGTTCGACGCGGTTTACGACGCGTGTTCCAAACAGAGCGACCTGTACGACGAGACGGTGCGGCCGCTCATCGACTCTGTTTTGCGCGGCTTTAACGGCACCATCTTCGCGTATGGACAAACGGGAACCGGGAAGACGTACACCATGCAAGGCCAGTGGCTTGACGCCGAGCGCCGCGGCATCATCCCAAACTCGTTCGAGCACATCTTTACGCACATCTCGCGCTCTCAGAACCAGCAGTATCTGGTCCGGGCCTCTTATTTGGAGATCTACCAGGAGGAGATCCGAGACCTGCTCACCAAAGACCACAGCAAGAAGCTGGAGCTGAAGGAGAGCGCCGACTCAGGGGTCTACATAAAAGATCTGTCCTCCTTCGTCACCAAGAACGTGAAGGAGATCGAGCATGTGATGAACGTTGGGAACCAAACCAGATCGGTGGGTTTTACCAATATGAATGAGCACAGCTCAAGGTCTCATGCTATCTTTATCATCACGGTGGAGTGCAGCCAGCTCGGGCCGGATGGACAGAACCATATCCGCGTAGGCAAACTCAATTTGGTTGACCTGGCTGGGAGCGAGCGCCAGACCAAGACTGGCGTACAAGGAGAACGTCTGAAGGAGGCCACCAAGATCAACCTGTCTCTCTCAGCTCTGGGAAACGTAATCTCTGCGTTGGTGGACGGGCGAAGTTCTCACGTTCCCTACCGTGACTCTAAACTCACGCGCTTGCTGCAGGACTCACTGGGCGGGAACGCCAAGACCATCATGGTGGCCACGTTGGGACCGGCCTCCTACAATTACGAGGAGACCCTGACCACCCTGCGTTACGCCAACCGCGCCAAGAACATCAAGAACAAGCCTCGCGTCAACGAAGACCCCAAAGACGCCCTCCTCAGGGAGTTCCAGGAGGAGATCGCCCGGCTGAAAGCGCAGCTGGATAAACGCGGCATGCTCAccaagaggaagaggaggagcaggagaCTGAGGAAGATCGGAGATGGCGGCGAGGTAGAAGAGGGAGAAGAGGATGATGGcgaggatgaagaggaggaggaggaggagagcgtGGAGAAGGAGGCGCAGGAGTACATGAAGGAGCAGCAGGAGAAGCTGGAGAGGGAGAAGGAGGCCATCAGAGATGACCATTCTCTGGTGGCCGAGGAGAAACAGAGGCTCCTGGAGGAGAAGGAGAGGATGATGAGACATCTGAAGAAGGAGCAGGAGGCCACTGAACTCCTCACAGCCAAGTTTAAGGCCATGGAAAGCAAGCTGCTGGTGGGAGGAAAGAACATTGTCGACCACACCAATGAGCAGCAGAGGATTCTGGAGCTGAAGAGGCAGGAGATAGCCGAACAGAAAAGGCGGGAAAGGGAGATGCAGCAGGAGATGGAGTGTCGTGACGAAGAGACGCTGGAGCTCAAAGAGACGTACAGCTCCCTGCAGCAGGAAGTTGACATTAAGACCAAGAAACTGAAAAAgCTCTTTTCCAAGCTGCAGTCTGTGAAGGCGGAGATTCAGGACGCCCAGGACGAACACGTCAAATACAGGCAGGAGCTGGAGCAGACGCAGAATGAGTTGACCAGAGAACTCAAACTTAAACATCTGATCATAGAGAACTTCATCCCAACGGAGGAGAAGAACAAGATCGTCACGAGAGCCACTTTTGATGAAGAAGATGACCTTTGGAAGATGACCCCCATCACTCGTATTCAAAATGATCAGCAGATGATGAAAAGGCCTGTTTCTGCAGTGGGCTACAGACGGCCTCTGAGTCAGCACGCCCGTATGGCCATGTTGATGCGGCCTGATGTCAGATACAAGGCTGAGAATATCTTGCTGCTGGAGTTGGACCTTCCCACTCGGACCACAAAAGACTACGAGGGGCCGGTGATCGCTCCTAAAGTGGCTGCGGCTCTGGAGGACGCTCTGAGGGAGGAAGATGAGATCCAGGTGGACGCCTCTGGTCTTCGTGCCAGCCTGGGCTCCAGTCCAGGCCTCAGTGCCTCAGCTGCTGGGTTTTCCAAGAAACCAAAGTCAGGCCGCCCAAAAACTGGCAAGAAGGTGAGCACTCCAACTTCAGCTCACAGCCCTTTGTCCGGCTCAGGGTCCCCTCTTTACCCACAGTCCCGAGGCCTTGTGCCaaagtgaaaataatgaaaacctTCACCGCTCCATGTAAACTGACTGGCTTTGGCATTAAAGTTGTCATTTTTAGACAGATTTACGACAGTAGAACATCTTGGTGTTTTATTCAAACCCACCAATTGGCCCTCAAACTAACTTGTTTTTAGATATCACGTAAACATAAGGTTTATAGcgcaaaaaaaagttacatttggtGAGAATTAAATCTCAACGCAAGATTTAGTTCCACAGATTTAGTTTGCACTCAAGCAAAatgttacgtgtgtgtgtgtgtgaggtcattGAGACAGCAGATGGTCTCGAAATTGACCATACGTGGTAGTTACGTCATTgtgggaatgtttttttttcttctgtgtccAGTTGTAGGATTAACAAATTTCTCACAAAGTAGCTGGAGATGAGATTTATGCTGGTCTGGGCCACTAAAGCACTGTATTGTTGTTTGACAAGAGAGTAAGCACATTACGTCATTGGCTAAGACCCAAAACAACCTCTAAGCCTTTTTTCGAAGACTCTTTGAGTCGCTTTGGCTGGGAGATGGGCCCAGAAACGCACTTGACCGGGTTGCCGTCACAGTCAGCGCTGTATCCAGTAAGAAAAGGAATTAGGGGGTTTAAAGGTCATTACATACTAAAAATATCAGGGTTCCAAGGTGCCTTAGATTCTCTTTACATACAGAAGTTTGGTCTGAGAGTCCCTTGACCTGATAGCTGGACAGTTGAACCCGAAATCCACACCAAAACCCCTGTGGATGGTTCATGAATGCTTTGAATTACACTAGAAGTCTGTCGTGTTGGGCAGGCTTGTATTTGATGTTCACGGGGATCTGAGTTTGACACGAGGAAGTCTTATTTCTGTTGAACTAGTGAAGGTAATACCATTGCCTGCTGCTACTGTAGGGTTCTTTTACCCCTGTGTCATAGCATACGGTTATGTATATTAAGACATGTTAGTAAATAAATCTGCATCATCATTGCAGTTGTATTtaaatccaaaataataaatgcagtcttaaagtaacattttaaaaaggctaaGTTATTACCATACTAGTCGGTTTTATATTCAAGCAATTGTAGATAGTTTTTAACAGTCGTATTTTCTTTGCTTAGATTTATAtggtttatttttgaatatgtattatttaaagttgtgtacaaatttatttttgcatataagATTTAAGTATCATTTTCATGTGATTCACTGCGTTCTCTTGTGTTGAGCGAAATGCGCCATCGTCGTATAATAAACACGCAGCTTTTGGATCGTCAGAACGTGTCCTGCAAATCCTGATGCTGCTCATTGAAATCGGTGTGAATTTCTTCATTTGAGTATGCATTATCTAATCAATGTTCACGCTGCCACTCCTGGCTGTATTAATGCATAAGTCATTAGTCGCCGTTATGTTATTTTTGAGGTTTTAGCATGACATGAGAACATCCAAAGCATTATAGGCAAAATGAAACCGTACGTCGGCGGTCTAATACTCCACTTTCACCTTCTTCCATGTGATGCATGAGTCCAGTGCGAATACCTACACtgagaaaataattttactgttcacacaggtttttgttttgtactaAAATGTTTTCGAATTTGTATTTGAGTTTAGAATGCAAATGTCCTCAATGTTTTAACCATCTTTAATTAAAAGGATGATTATTCTCTA

Function

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0048839 inner ear development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0048884 neuromast development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K20196 KIF3B; kinesin family member 3B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230545 lncRNA downstream 4751 7766248 ~ 7817371 (-) True G155670
TU230451 lncRNA downstream 337917 7483923 ~ 7484205 (-) True G155629
TU230450 lncRNA downstream 339630 7482027 ~ 7482492 (-) True G155628
TU230449 lncRNA downstream 341552 7479495 ~ 7480570 (-) True G155627
TU230446 lncRNA downstream 360820 7460929 ~ 7461302 (-) True G155624
TU230569 lncRNA upstream 1978 7834562 ~ 7836538 (-) True G155684
TU230570 lncRNA upstream 1978 7834562 ~ 7836538 (-) False G155684
TU230571 lncRNA upstream 1978 7834562 ~ 7836538 (-) False G155684
TU230585 lncRNA upstream 140519 7973103 ~ 7973325 (-) True G155698
TU230649 lncRNA upstream 344115 8176699 ~ 8177518 (-) True G155737
XM_043224007.1 mRNA downstream 33835 7784305 ~ 7788287 (-) True LOC122328356
XM_043224442.1 mRNA downstream 39405 7774301 ~ 7782717 (-) True kif3b
XM_043224185.1 mRNA downstream 296621 7522064 ~ 7525501 (-) True npbwr2b
XM_043225085.1 mRNA downstream 479564 7310570 ~ 7342558 (-) False rgs19
XM_043225053.1 mRNA upstream 21720 7854304 ~ 7861354 (-) True LOC122328943
XM_043225052.1 mRNA upstream 29619 7862203 ~ 7866387 (-) True LOC122328942
XM_043224019.1 mRNA upstream 89669 7922253 ~ 7932104 (-) False tm9sf4
XM_043224018.1 mRNA upstream 89669 7922253 ~ 7932104 (-) True tm9sf4
XM_043225407.1 mRNA upstream 99859 7932443 ~ 7954995 (-) True LOC122329207
TU230401 other downstream 543799 7276448 ~ 7278323 (-) True G155596
TU230379 other downstream 818635 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 825313 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 840333 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 954841 6864425 ~ 6867281 (-) False ccm2l
unassigned_transcript_2580 other upstream 353313 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 353611 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 354233 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 354533 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 356229 8188813 ~ 8188906 (-) True trnai-uau_9

Expression Profile