RNA id: XM_043224610.1


Basic Information

Item Value
RNA id XM_043224610.1
length 3097
RNA type mRNA
GC content 0.40
exon number 12
gene id c23h1orf127
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8913062 ~ 8919770 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCGCATCACAGCACATGGAGgggtttgtaaatAACCAAACAAACCATGGCGCTGAAGCTCACAAGGGTTTTACTTATTTCATTAATCTTCTTTTTGCCCATATGGGGAAACGTCTTGCGACTTCAGAAGAGAGACTGGGTGGGCAGTCCATCATCAAGTGTGACAgAGGGTGATGTGGAATGTTTCTCTGAGTACATGGAACTTTGGATCCATAGAATGAGAATTGAGGGACTGAGACTTTGGCTTTCTGGAATATTACGAATTCAAGTGGGTATGGTGTCCATGGAGAATCTAAATCATCAGCTTTCTTCGTGTGGGTTTGCCTTGCACAGAGATCTGGAAAAGAACTATATCTTCAGAGTCATGTACAGCGGATGTTTTGTCCAGTTAGAGcatgacAATTATGTGATTGTGCTGAACCTGCTGAAGAGAGTGAGTCGATTTGGAGGCAGGACTCAAAAGTTTCTGATGAAGTGTCCAGCGGTGTTGGCGCCTCCTAACAGAGAGTATATCCAGTGTGATTCAGACTTCATCCAGGTTACCAGAGAGATCCCCGTTGATAACTGGAATAATGAGCTTGACTGGTCTCTGGCTTTGAGCGGGAGTCTGGTGGTGGCTTTGGAGGATTCCAGTCTTATtcaagtaaatgttgaaatgcaCAAACCAAACATAACAGTTCAGGGAAGGAGAGACACCATCTTAAGTCCTGTGCAGGTGTTCAAATCGGAAGGACATTTCTTACCTCTCAAACTGGTCAGTGGCCATTATGCCTACAGCATGGAGGGGACTTGCCCAAATGTGAACCAAACATCATCTGAAGACACAGTGCTGTATGTCTATAAAAGACGCATGGGTTTGACCAGAAGAGGTGGATATCAAAATGAGACCCTGTCAGTCGGCAGTGTGATTGTGGAGCAGACCGACACGTTCACCTGGTCAGAGACAAGTGACTTTGTGCAGCTTATCATTCCTACATCTCACATTCAACTGAAAAAGgagTGCATTGGTCAGGCAGGTGAGAAACTACAGCAACATTTCTACAAAGTCGATGCTGTTCTAACCTTTAAAGAGACAAATCACAAAATGCACTGGACTATGGAAAACACCTCACCTTGTTCAGAGATGTTAGAATCACACCTCCATTTAATGCGCGATGACCCACAAGAAGCTAACGTGACAACACATTCACCCGAGGGTTTTACAGGCAAGCCAGAAGTTCCTGATGGTTCCCACAAAGAGTTTACTCCTCCTGTGTCACCAGAGACTATATCTACAGCATCACAGACAGCTGATGAGAAAACCAGCATAACCTCGGTACAATCCCAACTACTCCACACAACTGAGGCTCTTAGTACATCAAGTCTTTTAACGTGAATAGAGATAATGACATAAAAGTATTTGCAGCTACACTTTACAGCCTAAAGCACGACAGAAATCTCTGAAGAAGCTCTTCTGGGCGTCCATGAAGGTGAGGGGCCGCAATGCAGAACGTATGGAAATGCAGGTACCAGCTGCACATGTGTCGGTGATTTCCGTTATTACTATTGGTAGTCCATTAATCACTACAGATGTAATCACAATTTGAAATACAGCTACACATTTAAGCGCCATTTTCACTCAGTCTGGGATTTACAACACAACAGTCAAGTGGACCCATGCATCTTTTCAGCTGACAAGCAAAGTGCCATTGGAATCACATGTGGGGAATGATTACATCAAAGACTGTGTTGGTCGTGCCATTTAGATGCGAGCTACTGTCTCAGAACTCCCTGAGCTGTGTGTGTCACATcacatcttgggaataaatgtgGTGTCTAGCAGGTACAAACTGGTGTTTACTCTTAAGTTGCACTGTAACTAtccctgttttttttcctaaaaaacaGAAGGGCTCAATACTTGGCGCtctactttttttaaacgtatAATGAGCGTGTTTATTATGTTGCTCTCTGGAATccatttttcttaatttgtcACAACATTTGTATATTGCTgcatattattttgataatcaTGAATATGGTCTTGAAATGTAGTTACACTAAAaccacaaattaatttatttcttaaaaatgtacagtattgaTAACCATATACTGCcatccataataaaacaaatcgaacataataataatcaaaaatagaaGATCGAACCTCTTCACTCttataatttgttaaatatttggaCATGTACTAGTTAGGGCCTACACATTGGCATTATTTCCATATCTCTTGTATCACACTGAGGACTCACTCTCACTTGTTTCTCACAAATACAACTAGCACCTTCTTGCACCTCAGTTACTGATATTAGTAAATATTGTTGCAGTGTTCTGTTCAGTGGactgttttctttgcattttccCTTACATAGAGTATGTATACAGATATGTTGTATATTAATTACTGCAGGTTTTAtttctggaaaaataaaacgtgaTACGTAATCTGTATTTAAGTAGAAAGTGTTTATTAACTGAAACCAATGGGATGTTTGTGTTCTGAACGAACCACGGATGCCTTCTTGCTGAATCTCCTGCCATGCGGCATCAATCTACAATGTAAGGAGTTTTTATTCAAGGATGTGATCCCTCATACAGTAGTTTTCTTGATCTCTTTAGTTGTAGTTACAGTAGCCGCTGACTAGCTGTCAGTGGCAGTATGAGGAATATCCAGAAGAGGTCAGTGTTGTTCAATATTTGGCTTTTGATGAAAATTCCAAGGCAATGAGcaatgtgtctaaaatgtagtattttgaGGTTGGTGTCAGTTGTTCAaaaggcatatatatatgttttaccGACACTTGGTGtttttgttcataaaacataaatactgGGCATTGATGTACATTCTGATTTGATTTAGTGGGAAAACAACCTCAGATGTGAGGTTAGTTAATTTGCCTTTACTACGCAATTTCCCATGCTTGAATGAATTCAATTAGACTTTTGAAAGGGCAGGCCATTTTAATGTAACCCAGTCAAGATATTCTTCTAAATTCTGAGCATCTGGAAGAAAGACCACTGACACTCGTAAAATTTATTGTGATTACGCTCTCGATATTTGAGCAAACCAAAGAACACCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230942 lncRNA downstream 283960 8628699 ~ 8629103 (-) True G155933
TU230786 lncRNA downstream 287421 8624926 ~ 8625642 (-) True G155825
TU230759 lncRNA downstream 380136 8526402 ~ 8532927 (-) True G155803
TU230697 lncRNA downstream 530456 8307279 ~ 8382607 (-) True G155759
TU230649 lncRNA downstream 735545 8176699 ~ 8177518 (-) True G155737
XR_006247890.1 lncRNA upstream 150718 9070384 ~ 9072944 (-) False LOC122329247
XR_006247891.1 lncRNA upstream 150718 9070384 ~ 9072938 (-) True LOC122329247
TU230977 lncRNA upstream 159867 9079533 ~ 9097263 (-) False ctnnbip1
TU230983 lncRNA upstream 233414 9153080 ~ 9153502 (-) True G155968
TU231000 lncRNA upstream 268847 9188513 ~ 9188897 (-) True G155979
XM_043224373.1 mRNA downstream 135805 8699825 ~ 8777258 (-) False casz1
XM_043224374.1 mRNA downstream 135805 8699825 ~ 8777258 (-) True casz1
XM_043224375.1 mRNA downstream 164748 8699825 ~ 8748315 (-) False casz1
XM_043224372.1 mRNA downstream 164748 8699825 ~ 8748315 (-) False casz1
XM_043225269.1 mRNA downstream 356032 8554507 ~ 8557031 (-) True LOC122329065
XM_043224616.1 mRNA upstream 5510 8925176 ~ 8926751 (-) False sst6
XM_043224617.1 mRNA upstream 5510 8925176 ~ 8926303 (-) False sst6
XM_043225279.1 mRNA upstream 7837 8927503 ~ 8933579 (-) True pgd
XM_043224247.1 mRNA upstream 14814 8934480 ~ 8997506 (-) False kif1b
XM_043224244.1 mRNA upstream 14814 8934480 ~ 8997506 (-) False kif1b
TU230789 other downstream 284672 8625758 ~ 8628391 (-) True G155827
TU230763 other downstream 361086 8545394 ~ 8551977 (-) True G155807
unassigned_transcript_2616 other downstream 707547 8205423 ~ 8205516 (-) True trnai-uau_41
unassigned_transcript_2615 other downstream 707847 8205123 ~ 8205216 (-) True trnai-uau_40
unassigned_transcript_2614 other downstream 708374 8204596 ~ 8204689 (-) True trnai-uau_39
TU230970 other upstream 1898 8921564 ~ 8926610 (-) True sst6
XR_006247818.1 other upstream 276561 9196227 ~ 9209964 (-) False ccdc187
TU231373 other upstream 882119 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 882119 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 912462 9832128 ~ 9833633 (-) False zgc:153284

Expression Profile