RNA id: XM_043224619.1


Basic Information

Item Value
RNA id XM_043224619.1
length 4689
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC122328736
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10568565 ~ 10582430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaaaagatttttaagcACATGAATGTACTTGGATTTAACAAacgcatacacacaaatataaactatcattcaaaagtttggggttggtatgATTAGTCTCCtatccaaggctgcatttattcaatcaaaatactgtaatatagtgaaaaatattattgcattttaaaataactgcattcaaaaagtattttaaaaatgagtgtATTCCTGTCACCactttaaagctgaattttcagtatcattactccagtttttacTGACACATGATAATTCAAAAGTAATTAATCAATGGTgaaataatgtgtaatatattttggaaactgttatacatttttaaggattctttgatgactagaaagttcaaaagaacagcatttatatgacATAGACAATTTTGCAGAActgtaaaagtatttaaagaTCTGCAGTAAAAAACATGTCATTGTATGAATCCCAATTAACTGTGTAAATTATGCAGTGGTATATAAGTTAAATAGAAATAGTTACGTCTAAAAGTTTAATTTCCTGTGTAAGCCATGCTCGTGTGCAATTCTATCCAAGTACagatcattttataatttcaagATATATACTACTAGTGCCAATGAgtttaaatggtaatattgcAGTAGAGCCCAGCTCTGTGCCTCTGTCTCATCTCTGTTTCCTCAGATTCAACCTGCTGAAGGCCCTACAGCCTAAGCACCGCTTGCAACAAATGCTGTCGTCTCCCACTGCATCCCCTGTACGGAGTCCAGCACCTGTCAGTAACCGTGATCCCTATGGAAATGCCTCTCTCAGCAGCAGTAGCAATTCAGGGTCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCGTCACATAAAATACACCTCCTGCAATGATAACCATGGTATCCGACCCCCTCCACCTGAGCAATACCTTACCCCGCTGCAACAGAAAGAGGTGTGTATCCGACACCTCAGAGCACGGCTCAAAGAAACCATCGAAAGACTACAGGACAGGGATACTGAGATTGATGAGTTGCGTACTCAGCTGTCTCGTATGCAAGAGGATTGGATAGAAGAGGAGTGCCACCGTGTGGAGGCCCAGTTGGCTCTGAAGGAGGCTCGCAGGGAGATCCAGCAGCTTAAGCAGGTGGTCGATGTCGTCAGATCTAGTCTGGGAGACACCGACACTGGAGTGCAAAAGTGCTTCCAAGACATAAACCTCCAGAACCACAAGCTGGAGTCTTTATTGCAAAGCATGGAGCTGGCTCAGGTCGGGACCCCCAAAACAGGCGAAACCCTGGCAGGTGGAGGGGTGGTGGGGGCAGAGCTGGAGGTCAGCGAGGGCCTGGTGGAGTCTTCTGAAGGCTCCCCAGCTCGCTCGCTTACCCGCAGCTCTACCTACACCAAGCTAAGTGACCAGACTGGCCAGGAACGTGGCAGTAATGAAAATGGGTGTGACATTCCATGTTTGTCAGGTGAGGGCACGCAGGACAGCGGGTTTGTTTGCTGTGGAGAAAGTGGAAGAGGAGCAAGCAAAGCAGACCTGCTCCTGGAGGCTGCGTTTTTGTCTCAAGAGACGGCCTCGCTGCTTAATGCGTACTCCCGCCTGCCACACTCCTCCACCTATGAAGCACTGAGCATCAGCGAGCCGAGAGTTGTGCCACTCCGCTGCAGTGGGATCGGGACAGGGACAACTGTCAGTGTAAGTCATCCATGTCTGTCGCATCATCACCTATATCTACATCACCTGCGTGAGCAAGGCATTCAAACCGACTACGACCATGCCCCTGCTTCGGCACCTGCTCATGGTCCCAGTACGTCCTTTAACTCCGATCTGGACACTATTGCTGAGCGTACCTTCCGCTCCCAGGCATGCAGTCCGACCTCTACCTGGATGTCCGATGAGGGAGATGATCTGGAGTCGGTAGCCACAGAGTCAGCCATTACGGCAACAGTTGCCACAGTTTCTGTCGTAACAGACTTTTCCACTAAGTCTGCACCAGCTATTGCAATGGAGCCTTGGGCATCAAAAGGACCTGCGACTTTAGTGTTGGAGTCTTCTGTCAAGGAGACAACTGTTTCCGAGATCCTTACAGTCTTACCAATCACCACAACAGCTTTGACCACAGACACCATGGGGTCCCAAGTACAATCTCAACCTGTGACAGACCCTTTGCCAAACCCTGGCACCTCACCTTGCTCCATAGAGCCATTGTTTGGCATTGAAGGAGAGCCCCTTCCACAGACCACTCAGCCTCTTAGTGTACTAACAGAGGCTGGGGTTGAAGGGGATCATGTCATTAATATAGGCACAGACGATGAAGATGAGGTTGATGAGAGTGCGACGAACACAGAGTCCAAGTCATCTGGCTGTGGTTTACCAGCAAAGAACTACTGGAGCCGGCACTTCCTAGTGGATTTGCTTGCGGTGGTCGTGCCAGTGGTCCCCACAGTAGCTTGGCTCTGTCGGGGTCCACACCGTGTTGGTCAGCCAATGTACCATATTGGTTCTCTCTTGCGGGGTTGCTGCACGGTGGCCCTCCATTCCCTGCGTCGAGGAGGAGGTATTCGGCACTACCCCGCAGGAGGAGGTGGTCCGGGGGGAATGAGTATATGAGACCAGCTCTTCTTCCTGGAGAAGCCTTAAAGCCAGTGATATCACTGTTCTTCTGTCAGATGTCCAATTAGAAAGCGGTTaacacatgtaaaaataattgaGGCAACCAGAGGAAAAATGGTGTCTGAGCACAGCACCTTAACGCTGTGGTTCTCTATGGTCTGTATCCTGGATAAGAATGAGGAAGGGGAATCACTAGCATGTATTTACACCTACGAATGAGATGCTTGTGAAGTTCAGGACTTCAAACGAGCTTTCACCTTTTTCCACAACTACTACCCTGAATAAAGAGGCGAGAAGATGTGTTATGAATGAAGGACTGACACAATGACATTAACTCAGCTTTGTGAGTGACACTAAAAGATCCCCTTTAATATGATTGTATTACCCTTATTTAGAGTGGAGAGACGCAATAAGTGAAGGGAAGAAGCTGTCCTTTTGTGCGTCCCTCTTACTGTCAACGCAGAGGGTGTGCgtcgtatgtgtgtgtattgatttATCTGAGCGAGTGTTGTGATGTGTTAATGTACAGTGCCGCCAAAGTACCTGGATTACTAATGGCCATCATTGTTGTAGCCGTGAGTGCAGTAGTTAGCTGTCCCATTACTTATGCCTGTGTGGCGTAAGAGCAGAACAGTCATCTTTTCCTCTTAAGGAGCTGGACAAGCGCCTGCTGAGCTATTTATATGCTTTGCATATACCACTAGTGTCCTAGATAAATGCTGTCACATGATGATACTTAGCCCATCTGGAGTCTTTTAGATAATGTATTCTTTATTCTTGCTCAATTATGTGGGAAAGTTTGATGGTTCAGACATGCTCTGTATAGTTGGATGCTAAATTGTgggtaatgcattttaagtaataatatgaACAGTAAGAAAGATTCAGCGCTTAGACAATGATCAGGGTTAAATGACTTTAATAGGGTCACGGAAGCTTTTTCaccacaaattaattttttgattttgtttcacTGTGTGATTTTTCACTGTGTGACCATTAAAAACACTGTCATAGCCAGATGTTTTCGATGAAATTCTAATAGGTCTAATTTTCATGTTAGTCTAGGTTAAATAATTACAGCCTGAATAAGAAAACAGCTGAACTTAATTTAGTATTACACCCTGCTAAACAAAACTATAAGTACTAATGTTATTCAATGTTAGTTATTGTGTTATTTCTGAAATACCATGCAATGTAATTCCactaaaaaattaattttgcattctGTTACTTGGTTAAAAAAGTGGAATATACAAATTGATGAACTATCTAAGCTTGAAatttaaaacagtgaaaataaattacatatttactgCATGCAGAAACAAAATTCAGTTAGAATCTTCTGCTTTCAGCTTTTTCCAAACATTTGGCAATGACTTTATGTACCctatgatgtttatttatttgactgacAGGTGACGGGTGGCATTTAATGACATGTCGATTGCACTATAATTCACTTTATAAGCAATTACTTGAAGTATACTTGATTGTGATTATGattatttctgtctgtccaaAGGTCAATGCATACATGTGGATTTGTGGTTCAGGGTTAAGATTTCACCAATACCACCATTTCAAAAATCAACACCAATTCATAAATTCATGTGAATATTTATGCTTTGTGTAAATGTGACAGCTGGATTGATTTGCCAGTCAACAGTGTACCAGATAATCAGACGGATGATCACTGTTGTAGTAATTTGTGTCTCACATACTGTTTTCTCTTCTGTCCCTTGAAATCATGCCGCTGCCTTTCTGTCTACCTCCTCCCTCTGATATTGTGTACAGTATAGTGTGATATAGGCTTTATTTGTTGTCTATCTGCAAAGTTCTCCTTTAAATAATTTGCTTGATGTGGCGTCTGTAAGGTTTTTCAGCGCttgatattcatttttttaactgcttgacaatcttaatttgtgctttaAGTGGTGGTAAGTGGGCATATATGTCTTTAATTTACAGTCTATTCCCTGCACTTTTTCACCTCATTCCAACTGAGCACTTAGTAAAGAACCTTACTAtggatttaaagaaataaaggcATATATGTTCCTGATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231691 lncRNA downstream 25678 10540899 ~ 10542887 (-) True G156452
TU231560 lncRNA downstream 179950 10387873 ~ 10388615 (-) True G156364
TU231562 lncRNA downstream 180875 10386954 ~ 10387690 (-) False G156364
TU231559 lncRNA downstream 181069 10386954 ~ 10387496 (-) False G156364
TU231551 lncRNA downstream 210948 10355954 ~ 10357617 (-) False LOC122329224
TU231700 lncRNA upstream 90564 10667957 ~ 10675579 (-) False G156459
TU231701 lncRNA upstream 90564 10667957 ~ 10675579 (-) True G156459
TU231718 lncRNA upstream 119059 10696452 ~ 10696677 (-) True G156468
TU231719 lncRNA upstream 121204 10698597 ~ 10700224 (-) True G156469
TU231724 lncRNA upstream 125203 10702596 ~ 10702821 (-) True G156471
XM_043224136.1 mRNA downstream 43193 10522098 ~ 10525372 (-) True LOC122328446
XM_043224135.1 mRNA downstream 47493 10516716 ~ 10521072 (-) False LOC122328445
XM_043224134.1 mRNA downstream 47493 10516716 ~ 10521072 (-) True LOC122328445
XM_043225420.1 mRNA downstream 111647 10449485 ~ 10456918 (-) True LOC122329230
XM_043224359.1 mRNA downstream 121348 10432764 ~ 10447217 (-) True LOC122328599
XM_043224691.1 mRNA upstream 84870 10662263 ~ 10674097 (-) True LOC122328766
XM_043224764.1 mRNA upstream 98287 10675680 ~ 10678150 (-) True LOC122328798
XM_043224763.1 mRNA upstream 101612 10679005 ~ 10686715 (-) True LOC122328797
XM_043224762.1 mRNA upstream 112271 10689664 ~ 10694950 (-) True LOC122328796
XM_043225474.1 mRNA upstream 128590 10705983 ~ 10709169 (-) True cdc42l2
TU231532 other downstream 201196 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 329292 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 336646 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 734883 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 734932 9832128 ~ 9833633 (-) False zgc:153284
TU231697 other upstream 98291 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 523351 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 940617 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 1164007 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 1164007 11741400 ~ 11746620 (-) True LOC122328546

Expression Profile