RNA id: XM_043224631.1


Basic Information

Item Value
RNA id XM_043224631.1
length 1838
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC122328739
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14453706 ~ 14455543 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtccTCTAtgtaccagaaaaaaaaaagtgttaacaTGAATTCTCAACTTCCTAGGAGGATATATTgctaaatgctaatgctaatcaCTAACAACCACCCCAGCACAGATTCCCTTTATCTCTTGGACTAAACACCCCAATGTTGCTGTGCCATGTGAGGAAGTTATTAAGTCTCAAAAAGGCTAATTATTAGCCTGAAGCAGACAGCGATCTTCATCTCCACCCCACACTTCAGTAAACTGCTCtcttcagtgtgtgttcagcatgAATATTAGCCATGAAAGTGTGAGTCTGAGCTGGGAACTAACACGGGTCTTAGCTCCCACTCTGGACGCGATAGTCATGCTGATCGGGCTGGTGGGACACTCGCTGGTCATCTATGTCCTGACCGGACGGAGGAGGAAAAATGGATTCCAGTCTCTTCAAGGGACAGATACATTACTTTTAGCTTTGAGTGCTTCGGATCTCCTGCTGCTCATTTGCCTGCCCTTCCACACCGCCGCTATAGCACTGGGGTACTGGCCCTTCAGCAGCATCCTATGCAAAGTCATCAGCTTCCTGGGAGTGACCTGTAACTCGGTGAGTGTATTCACTCTAGCTGCATTAGCGGTAACACGCTACCTGATTGTGGTGTACCCCGCTTGGACGTATCGTTTCCGAATGCGCCGCTGGCTGCGTGTCACTGTGATTCTCATGTGGGTGCTAGCCGTCGCTCTCGCAGCACCTCAGTTCGCTTTCCGCCAATTAAGGACTGCGCCCATCCTCTGCTTCGCGTTTCTATCAGACCTCAGCCAGCTGGTTTACAGTGCCATCCTGTTCCTGTTCGGCTTTGCTTTCCCTCTGATCATCATCGTCGTCATGTACGCCAAACTCTACAGCTTCCTGCGAATCACACGACTGCAGGGTACCGCATCACAACTGGAACGCTACCAGAACCAGGTGACCAAGACGTCGATCCTGTTGGTCTTAGTCTTTACTATTTGCTGGCTGCCATCCTACGTTCTCATGTTCGTACTCATTGCTACCGATAACagcagtatacacacacataagctGAACTTCGCCATGGTCGCCCGGCTGCTAGCGAGTTCCTCGGCTGTGGCCAATCCACTGCTCTATGCTTTCATGTCAAACAAATTTCGTAGAGAGCTGCTGACATTGGGACGAGTGTGCTGCAAAGGTTGCGGGTGCGTTATGTGTCCAGGAAGCGCTATAGTTGAGCCCTTTAACCCTGCGGAGCTGGACACCCCCACCCAACCAGGAGGATATAACAATTAATGGGCTTTTGCTGTAAAAGGCAAAAGCAGTAATGGgactaaatataattatgagataaagacaataaatattAGACATATGTTTGAACTGCATTGATTTGTTCTGCCAGGTATAGAGCCAACCTGTGAACACAATTTTATGTAATCGTTATGTGAACATATATCATATAATGTTAAGAAATGTACACGAGTGACAATGTCAGActtttaatgatgaaaatatCCATGCTTGCTTTCTTTACCGATTCATTATATGGCTTGTCAGGAAGAAACTGTCTACAACAAAAGCAACACAAACTTCGAACGAAAGGCTTTGcttttggtgtattttttcAATGCTTGCAATTTTTACTAAATGTTACTTGTTTTTTCTGTAGTAGCATGAAGTAGTAAGAGCACATTTTCAGGCTCCACTGGCATCTGTCTAACcatctaaaataaatggaaaaaaaggtcACTAATCTATTTGGTACGTAAATATGTTCCAAAAAATtccaaatatttctaaataatgacCATGTGCATATTAAATTGgtagaaatatacatatacacatcaTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233302 lncRNA upstream 78656 14373577 ~ 14375050 (+) True G157551
TU233288 lncRNA upstream 110432 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233289 lncRNA upstream 110432 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233290 lncRNA upstream 110432 14304574 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247865.1 lncRNA upstream 179971 14264664 ~ 14273735 (+) True LOC122328961
TU233363 lncRNA downstream 108797 14564340 ~ 14566056 (+) True G157608
TU233364 lncRNA downstream 110976 14566519 ~ 14566730 (+) True G157609
TU233365 lncRNA downstream 111658 14567201 ~ 14568506 (+) True G157610
TU233366 lncRNA downstream 113589 14569132 ~ 14569509 (+) True G157611
TU233375 lncRNA downstream 148250 14603793 ~ 14623728 (+) True pkig
XM_043224627.1 mRNA upstream 25523 14390815 ~ 14428183 (+) False fmnl3
XM_043224629.1 mRNA upstream 25523 14390815 ~ 14428183 (+) False fmnl3
XM_043224626.1 mRNA upstream 25523 14390815 ~ 14428183 (+) False fmnl3
XM_043224625.1 mRNA upstream 25523 14390816 ~ 14428183 (+) True fmnl3
XM_043224630.1 mRNA upstream 25523 14390816 ~ 14428183 (+) False fmnl3
XM_043225541.1 mRNA downstream 75910 14531453 ~ 14554130 (+) False rbms2b
XM_043225540.1 mRNA downstream 75911 14531454 ~ 14554130 (+) True rbms2b
XM_043224259.1 mRNA downstream 116704 14572247 ~ 14580946 (+) True r3hdml
XM_043224256.1 mRNA downstream 125489 14581032 ~ 14598335 (+) True hnf4a
XM_043224255.1 mRNA downstream 137368 14592911 ~ 14598335 (+) False hnf4a
XR_006247782.1 other upstream 110432 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 396885 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 399206 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2935170 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2937835 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233368 other downstream 228447 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 256604 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 280458 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 536807 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 845161 15300704 ~ 15304550 (+) True G157620

Expression Profile