RNA id: XM_043224634.1


Basic Information

Item Value
RNA id XM_043224634.1
length 4784
RNA type mRNA
GC content 0.43
exon number 16
gene id ptpn11b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13751746 ~ 13778674 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCTCTTTCCAACCAGCAGCACTCCTACAAGTCCCTGCCCCCTCTCTTCCTCCTTGTGTAACTGTACTGAGCGTGGATTACCAAACTCTGAAGCAAAGCAGGGGCTCTGACAGGCTCCGAACAGAATGGTGAGGTGGTTTCATCCCAACATCACTGGGATCGAGGCAGAACACCTGCTCCTGACACGGGGCGTCCATGGCAGCTTTCTAGCGAGACCCAGCAAGAGCAACCCTGGAGATTTCACTCTGTCTGTCAGGAGGAACGATGAGGTCACCCATATTAAAATCCAGAACTCGGGGGACTATTATGACCTGTACGGTGGGGAGAAGTTTGCCACGCTGGCTGAATTGGTCCAGTACTACACAGAGCAGCACGACCTCCTGCGGGAACGCAACGGAGACGTTATTGAGCTGAAATACCCCCTCAACTGCAAAGACCCCACGTCTGAGAGGTGGTACCATGGACATCTCTCGGGGAGAGATGCTGAAAAGCTTCTTACAGAGAAAGGTAAATCCGGCAGCTTCCTGGTGAGAGAAAGCCAGAGTAAGCCAGGAGACTTTGTGCTTTCTGTCCTCACTAATGAAGAAAAGCATGAAAACGTCGACCGCAAGACTAAAGTTACCCATGTCATGATCCGCTATCAGGATGGAAAATATGATGTAGGAGGAGGGGAGAGGTTTGACACTTTGGCAGATTTAGTGGAGCATTATAAGAAAAACCCCATGGTTGAGAAGAGTGGAATTGTTGTACACCTTAAACAGCCATTCAATGCCACAAGGATAAATGCAGCAAACATCGAAAACAGGGTAcgagaattaaataaagtagCTGACAACTCAGAGAAACCCAAGCAAGGCTTCTGGGAAGAATTTGAGGTTTTACAGCAGCAAGAATGTAAACTGCTTTACCCCAGGAAAGAGGGGCAGAgaccagaaaacaaaaacaagaacagaTATAAGAACATTCTACCATTTGACACCACTCGAGTGCAGATCAAGGAGGCGGATCCTGACGTGCCAGGCTCCGATTACATCAACGCTAACTATATCCGAAGCATGAATGAAGAAGGTCGTCATATGGATGAAGGTAAAGTGTTCATCGCCACTCAGGGTTGCCTTCAGAACACCGTCCTAGACTTTTGGAAAATGGTGTACCAGGAAAACACTCATGTTATTGTGATGACGACCAAGGAGATGGAGAGAGGCCGGAATAAGTGTGTGCGGTACTGGCCGGACTTAAACTCAACAAAGGAGTTTGGGAAGGTGTGTGTGAAGAACATCGAGGAACACACAGCTCAGGACTACATACGACGAGAGCTCGAAGTCACGCGTCTAGACAGGAGAGAGCCTCCCAGGTGTATCTGGCACTATCAGTACCTGAGCTGGCCTGATCACGGTGTTCCCAATGAACCTGGAGGAGTCTTGAGTTTCCTGGAGCAAGTCAACAGAACCCAGAGTGCCATTCCAGAGAGTGGACCGATAGTGGTTCACTGCAGTGCAGGGATTGGAAGAACAGGCACAATTATTGTGATTGACATCCTTATCGACATCATAAACAGACAAGGGTTGGATTGTGACATCGACATCCCGAAGACCATCCAGAGAGTGCGCCAGCAGCGATCCGGTATGGTTCAGACCGAGGCCCAGTACAAGTTCATCTACATGGCTGTTCAGCAATACATAGACACTGCTCAGAAGAGACTGGAAGAGGAGCAGaggaATAAAACAAAGGAGAGAGAGTACTCTAACATCAAGTACCCGCAGATGTCAAATGCCAGAGCCAAGCCAAACATGAGCTCGTCTCGCTCTTCATCTGTAATGAATGATGACTCCGGTGTTTATGAGAATTTGAACATCAAAAATCCAAAGGGCTCCACCAGCAGCAATACACGGAGATAAGCCATGTGGGCTGCTGTCTCAGGGACTCTGGGATTCCAGCAGAGGTGCTGTGTAGAAGCACCTGATCGTGGAGCGACACTGGATTACAGCACTGGGGGTAGAGGGAGGGCACTAGCAGCGTTTACGTTGAGGTGAAGCCGCCCAGTCGCTCGGCTAGAGATTCCACCGAAATCTCCAACAGCTCCTCTCTTCATTTCCTGACTGACTACATCTAAGAAACTCACACTCCAAGTGCCTCAACAGCAGCCGAAATTGTTCCCGCAAAGGACGCGTGGCTTGGTGCTTTCTCTCCCCTCTTCTAGTCTAACAAGCCTCTCTACACTGCACTAAGCTACATGATGGTTTGTACATGtgtgaaatatatatgaaatatgaatatttacacTCAGTGACGTAACTTTGGATGAAGCTACGCTCTTTCCATGCTGTCTACGGCTGTTTCCAGACCTTGCTTTGTCTGCTGGATGTCGTCTACTGTAACCAAAGACCTTTGATATGTATCTCACAAGCAGCGGTTATTTGCGCTCTGCTGAGTGATGCTCGTGTGGCATGGTGacataagaagaagaaaagtgcACCGTCCTGCCTCAAGGATCccctcttttcttttcagagCACATGCGAGGTGATTGGTCAAAGCTCGACCAGTAATTTGGATACTTTATGTAAGTAGGTGTTTCAAATGGGCTGATTTGGTACAGTGTGGTAGAATCTATACAGTATGTGCCAATTAGCAGCCTGTGCATCGTATTCTTAAAAGCTTCTGCtctgatgctttttttattgagcATTACCTCCAGGCAAATGAACCGTTGGAGGAAGTCAAGTGCTACTGTCAATCAAAGGCTTATCAACCAATCAGGCTGCCTCTTCATCAGCGGGTTCCTCCCTCTATGCTTAGGCTTTATTGTTCTGATAACATCAGGTGAGCCTTTATTAGGTAGGGTTTTGTTTGTTACTAGTCGTTTTGTTTGCAACTATGATTCCTTTAGAGCAATTTTATCTTGTGATATTTGTGAATGTGATTATGAAATTTAGGCCTGGcattttttgatttaatgcatttttgactaTATTATTCCACATTTTCCTCCTAAGAGACACATTAAGCTCTTTTATCACATATAAACAGGGTATGTGTGTATTGCGGTGTTACGAATAGCCCCATAAATCTCTTTACGTCAATAGCGGGTTGCGATTGCACGCAGGAGGCCAAACGTAAATTAAAAAACGTGGTGTTACTAAACATCCACAATGGAGGCGGTACGTCAGGATGTCGAGCGAGCTGTTGACGTGAATGCCGTTTCGGTGGAGACTTTAGCTAAAAAGGAGGCAGGCCAGATGGCCCACAGCTAAGATTAAAGAAATAGATTTGTGTAGGGcgaaaaaagtaatttgaaaCATGGCCGTAATCCACACATAGCTATTATTAGGTGAGGTCAGCAGTGATGTCATAAGATGTTATACACTACCAGGTCAGTAagggtttggggtcagtaagatttttttgtgtgtttgtttgtttaagaaatgaatacttttattcagcagggtTGCATTAATTTATCAAGAGGggtaaaaattttgttttttttatgctgttatgctcatgttttcaacaaaaaaattaacagcgtaattttttttttaatgtcagatGATGATTAAAAAGTATCTTGAGCAGCcttgattgatttctgaagggtcatgtgatactgaagactgaagtaagggctgctttgccattacaggaattaattaatttaattaattaaaatatattaaaacaaaaaacctaaTATGTCAATGCtattttcacaatgttttgGTTTGGCTATATTTTTAGAAGTATTCAAGCTTGGAGAAAAAGcgtaaaaaaatcttaccgacGAAAAACTTAAAAGTAGTGTACATCTTGGTCTAGATAAAGCAGGGCATAATGTATGTCATTAGTTATCGTCTGACTATGAATGTGGTGTTTATTTTGACCACATGAGGATGTGATGTCACAATCTGAAGGGCTACTGTACACGTTCAGAACGAGGCCTgggttttgctttttttgcactTGAATGGATGAAATGTTTGGGTTTTATACTAGAGAACCAGTTTGTCAGGCCGTCCAGGAAGTAAAAGCAATGTCACTGCATATGATAATCATTGTCCTTGgaatgactgactgactgataAAATGAATTTGTGGTCATGTGACAGCAATGTACTACTAGCATCTGAACGCTGTTTGTCTGctgtttaaatttgttttatttttacctctGTGAAAATATAATGGCATATTAAGACTTGAAATTCAATTTGAACTGCTGCAAGGTATAGTGTCTATGGCTGAATGTCTTTTGTTTGGAGGTATATATAatggatatttttttgttgatttgcCATCAGTGTGGTGTTTTGCGTTATAgatcagtcatttattttcgTTTTATTCGGTCAGTTATCGATTTTGTTGTAAattgtacatttcatttttccGTTTATACAGTGATGGAAATATTCACAGCCGTTTAGCATATTATTTTAGGACgatgttaacatttattattatttcttctaCTATTATACAAAACATCAACAGTTATGAAGCTATCTGCTTGTGTTATCACATTTTTGAAGTCTTCTGTTTAAATTTACTTGAATACTCTgttggtgggttttttttaatctcagttGGTGATCAGTAGGTTTGGTCTGAATTGTGTCGTGCTGATTGTCCTTGTGTGATAAAGACTGTGTTCCCTCTTGCACTGGTTCAGCCTAAAATGCCTTTTGCCCTGAAAGATACATCTGATGTAAAGACTTGCATCTCAATAACAATACAGGACTAGTTCTTGCATAATAAAGCATACACTGGGAACTTTCAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233089 lncRNA upstream 263444 13493586 ~ 13495376 (+) True G157408
TU233085 lncRNA upstream 264343 13411670 ~ 13494477 (+) False G157408
TU233091 lncRNA upstream 316869 13438275 ~ 13441951 (+) True G157410
TU232971 lncRNA upstream 643646 13114958 ~ 13115174 (+) True G157329
TU232968 lncRNA upstream 651863 13106460 ~ 13106957 (+) True G157326
TU233111 lncRNA downstream 22746 13801420 ~ 13882959 (+) True G157417
TU233118 lncRNA downstream 80291 13858965 ~ 13862206 (+) True G157423
TU233174 lncRNA downstream 119157 13897831 ~ 13901092 (+) True G157459
TU233151 lncRNA downstream 159769 13938443 ~ 13939354 (+) True G157446
TU233186 lncRNA downstream 160732 13939406 ~ 13939898 (+) True G157471
XM_043224211.1 mRNA upstream 11648 13538954 ~ 13747172 (+) False agrn
XM_043223986.1 mRNA downstream 25440 13804114 ~ 13824537 (+) False ttll10
XM_043223988.1 mRNA downstream 35547 13814221 ~ 13824537 (+) False ttll10
XM_043223987.1 mRNA downstream 35548 13814222 ~ 13824537 (+) True ttll10
XM_043223989.1 mRNA downstream 37667 13816341 ~ 13824537 (+) False ttll10
XM_043223991.1 mRNA downstream 46285 13824959 ~ 13831445 (+) False LOC122328345
unassigned_transcript_2622 other upstream 2240284 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2242949 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2244974 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2246122 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2581787 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 275690 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 278011 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 521027 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 905316 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 933473 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile