RNA id: XM_043224652.1


Basic Information

Item Value
RNA id XM_043224652.1
length 1652
RNA type mRNA
GC content 0.51
exon number 6
gene id srsf6a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1070758 ~ 1075667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTTGGCAATCGGACAAAAGCCTGTTGCGGCTGGTTTCAGTGCTGGAGATAATCTGCTGCTGCTGAGCTGTAACGAAATCAAGATGCCTCGAGTGTACATCGGCAGGTTGAGCTATCATGTCCGCGAGAAAGACATCCAGCGGTTCTTCAGCGGTTACGGAAAGCTGTTGGAGGTGGATCTGAAGAACGGGTATGGCTTTGTTGTGTTTGAGGACACCCGTGATGCTGATGACGCAGTCTACGAGCTGAACGGAAAAGAGCTGTGTGGAGAGCGGGTCATGGTGGAGCACGCCAGGGGTCCGCGCCGAGACCGGGACAGCTATGGAGGGGGTTATTAtggtggtggaggaggaggaggaggaggaggtggtggaggtggaggaggaggcggaggcggaggaCGCAGTGGTTACAGCAGCAGGAGTCGCACCGGAAGGGACAAGTATGGCCCTCCTGTTCGCACCGAGTACCGCCTCATCGTGGAGAATCTGTCGAGTCGCTGCAGTTGGCAAGACCTTAAGGATTTCATGCGACAGGCAGGTGAGGTGACCTACGCAGATGCCCATAAGGAGCGTGCCAACGAGGGTGTGATTGAGTTCCGCTCTTACTCCGACATGCGGAGAGCCGTGGAGAAACTGGACGGAACAGACATAAATGGGAGGAAAATTCGTCTGGTTGAAGACAAGCAGCGGAGGCGTCGCTCCTACTCCGGCAGCCGTTCTCGTTCTCGTAGCCGGCGTCGTTCTCGTAGTAGGAGTCGCCGTAGCAGCCGCTCTCGGAGCAACTCAAGATCTCGCTCAAGGTCTCGTTCTCGCCGGCACCGCTCCCGTTCCAGGTCTCGCTCCAAGTCTCCATCAAGCAAGTCTCGTTCGCGCAATCGTAAATCTCGTTCTCGCTCCCGCACACAAAAATCTCGCAGCCGATCAACCAGTCGCAAGTCCCGCTCCCGCTCGGATGAGCGCAAGTCCCGCTCTAAGAGCACTTCCAAAGTGAAGTCGGACCGTGGGCGCTCCAAGGAGAAATCGGTCACCAGGAAATCCAGAAGTAGATCTGCTTCACCGATGGAGAATGGCGATGGGGGTCATGCCAAGTCTGCTTCTCGCTCTCCGTCACCTCAGGCTGAGAAGAGCCAGTATAAGTCTCCAGACAGGCATTCTCGTTCTCGCTCGAAGTCTGCCTCACGTTCTAAATCCCGTTCCCGTTCCAGATCTGCGTCCCAAGATTAGTATTAAGTGTGGtcggattttttttctttcttttttttttcctctccttttGTTTTCCTCCAGCTCCTTCATCAATCCAGTTGTCCAGGATAGTTTTCTAATGCTCATGACGGGTTCAGGTCCAAGgcgtttcatttgttttattttactcttcTATAGTAAAAGTGAATCACCGCTTcgatattttatattcataacaaaagcatgaaaataaGTGATTTGATTTAGTGTGCTGCATGTCAGTCCTTTTTATAATCCATGGTCCTCTGTGCTGTGTGGCTAGAAGAGGCTTCTTGGCAAGGAAACGAAAAGTCACTGCGTCTTGTGGCTTGTAAAGCTATTATCTGAGAAATCTAGGCTTCCGTTTCATGTAATAGTTCATCGAAAACTgtctgattttgttttattaaaaaccagtctattta

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247797.1 lncRNA downstream 107181 960274 ~ 963577 (-) True LOC122328476
TU227875 lncRNA downstream 170992 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 188574 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 188574 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 204011 865477 ~ 866747 (-) False vgll4a
TU227992 lncRNA upstream 129812 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 129812 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 131033 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 313695 1389362 ~ 1393135 (-) True G153984
XR_006247811.1 lncRNA upstream 344190 1419857 ~ 1420454 (-) True LOC122328606
XM_043224654.1 mRNA downstream 554 1065562 ~ 1070204 (-) True si:ch211-10d23.5
XM_043224656.1 mRNA downstream 905 1065562 ~ 1069853 (-) False si:ch211-10d23.5
XM_043224655.1 mRNA downstream 905 1065562 ~ 1069853 (-) False si:ch211-10d23.5
XM_043224653.1 mRNA downstream 911 1065562 ~ 1069847 (-) False si:ch211-10d23.5
XM_043224649.1 mRNA downstream 5984 1053377 ~ 1064774 (-) False l3mbtl1
XM_043224659.1 mRNA upstream 2141 1077808 ~ 1081745 (-) True arl6ip5b
XM_043225074.1 mRNA upstream 11525 1087192 ~ 1095438 (-) True zgc:113278
XM_043225075.1 mRNA upstream 14850 1090517 ~ 1095438 (-) False zgc:113278
XM_043224673.1 mRNA upstream 89356 1165023 ~ 1184666 (-) True b4galt5
XM_043225357.1 mRNA upstream 206454 1282121 ~ 1344566 (-) True LOC122329156
XR_006247825.1 other downstream 6069 1056012 ~ 1064689 (-) False l3mbtl1
unassigned_transcript_2578 other downstream 50915 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247804.1 other downstream 284879 779085 ~ 785879 (-) True ndnl2
TU228038 other upstream 432031 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 432143 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 432143 1507810 ~ 1512329 (-) False smim29
TU228037 other upstream 432218 1507885 ~ 1512291 (-) False smim29
TU228040 other upstream 432218 1507885 ~ 1512291 (-) False smim29

Expression Profile