RNA id: XM_043224654.1


Basic Information

Item Value
RNA id XM_043224654.1
length 1852
RNA type mRNA
GC content 0.49
exon number 7
gene id si:ch211-10d23.5
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1065562 ~ 1070204 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCCGGCCCGGAATGCAGCCCGCCCACTTCCAGTTTACCCAATCGTGTTTCAGAAcgccgggttgccagttggcggGAAACAGcgtttttcatttcagtcatgaAAGCCGGCAAACGAAAGAGGCCTGAGCGGGAAATACAACTGTCTGTATGTTCTAAAAAGCCTCGACATCAATTGCGATGCGTTTTTGAGAGATGGAAACAGCTTAAATCAGCTGTATCATCGTCAAGAAACGAATGCTGAGTTGGCCCATCTTCTCATTGACGGCCGCAGTTGATCAATGCCCGTAAAATCTTCAGAGAATCTGCATCGAAATATCTGCTTGTGGGAGgcTGTGGGAGTGAATAGTGATGACTGGAGAGAgagtgtttatgtttgttgaTGAAGAGGAGCTCTTCAGCGCGATGAAGGACCTCGACTGTCTCTACTGTAGGATTCCAGTCACTGCATCTAAACATCACCTCAGAAAGAAACATCTCAGATTCGCTGTATATTATAAAGACTCTGGCATTGGGAAGTTTTCTATCCCCTGTTATTGCTCTGACGGAGGCCACGGCAGGAGCCACTGGCATTGCCCAATGTGCTCAAAAATATTGCACAGGACACAGAATTACAGAATCCATATTACCAACCATGGTGTTGAGATGACAGACAAGTCCTCAGTTGAGCTACGGCCTACAGCAGTCCTTTTAGAAAGCCTACGAACAGACCGCGAAGACGAGACCAAACCGGGCAACAAGGCAGCGTGCCAAAAGTGTGGGATCCTCTTTACCACGACATCGAATTTGAGACGGCATGAAAGACTGCAGCACGGCCACGACCAGCAGCCCATTTTGTGCATAGATGCCAAAAATGCAATCTACGTCACGCCCAAATACCTGCACGGGCCGAGAGTGCCCATTCACATCCGCAAATCCTTCACCTCGCAGGTTCTGCTGTGTGAGCTGGAGGAGTGCTGGGATTTCATGAAAGCGCAGGCCCAGAGCGGGAATCCCGGGAAGGAATGCCGTCACCTGGTCAGGACGAATCACGCAAGGCACTACGTTCCCCCTCCTCCTCTGTGCGTTAACTCTCTGGACGAGATGGGCCACAAGCAGCTCCTGTCCGCATCCGAGAAGCTCCAGTGCCGGGAGATGAGCTCCAGGGCGTGCATTCGGGGGGTGGATTGTGTCTACCCTATCTTTTGGGGTGAGCGCGAACTTTCGGAGAGGTGCGTCTTCTTTTCTGTGTACACCGACCTCGAGGACAAATGGTGTCAGTTCGGGAGGACCCGCGTCTCGTTCGACACCGAGTCTGGCGGCTGGAGGTGTCTGTGCAAGCGCAAAAGAAGCCGCTGCGTCCACAAGTGTTTATCCGCGTGGTGGTTGTTTCAGGAGCGTCCTGAACTCTTGCAGAATGCCCCAGATGTCCATGCGGAATCGGCCGATGCGCTCGAGGAAGCGGTCATGGATGCAGAGGACGTGGTTTAAATAACCACCTCCGCCAGACTCGACATCCGTCAGAACTTTACTTTCAATTTCTGTGTCTTCACTCAATAAAAACACTGGACCTAACCTTTATTTTAGGCTTGTAATTTGTTTGCAAACACTCATGTGCTGTCGTTTGCAGTTAACCAtagttatgtaatcagattgctttttttaaagtaacagtgaagatgtaatgaatttttttaacattttagtctGTTCCCGTGTTGAGAGTTGTGTTGCCTTCCTTCAGCCCGAGgcttattcatttcatttggtGTGACAAGGCCATATAACACTTTTTGTGGGGAAAACCCAGCATAGGTGACAAATACTAATGTGACGTATTACAGTCTTACAAATAAAGGTGCTAAAACTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247797.1 lncRNA downstream 101985 960274 ~ 963577 (-) True LOC122328476
TU227875 lncRNA downstream 165796 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 183378 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 183378 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 198815 865477 ~ 866747 (-) False vgll4a
TU227992 lncRNA upstream 135275 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 135275 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 136496 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 319158 1389362 ~ 1393135 (-) True G153984
XR_006247811.1 lncRNA upstream 349653 1419857 ~ 1420454 (-) True LOC122328606
XM_043224649.1 mRNA downstream 788 1053377 ~ 1064774 (-) False l3mbtl1
XM_043224648.1 mRNA downstream 873 1053377 ~ 1064689 (-) True l3mbtl1
XM_043224651.1 mRNA downstream 2113 1053377 ~ 1063449 (-) False l3mbtl1
XM_043224650.1 mRNA downstream 2136 1053377 ~ 1063426 (-) False l3mbtl1
XM_043224658.1 mRNA downstream 14090 1044820 ~ 1051472 (-) False sgk2a
XM_043224652.1 mRNA upstream 554 1070758 ~ 1075667 (-) True srsf6a
XM_043224659.1 mRNA upstream 7604 1077808 ~ 1081745 (-) True arl6ip5b
XM_043225074.1 mRNA upstream 16988 1087192 ~ 1095438 (-) True zgc:113278
XM_043225075.1 mRNA upstream 20313 1090517 ~ 1095438 (-) False zgc:113278
XM_043224673.1 mRNA upstream 94819 1165023 ~ 1184666 (-) True b4galt5
XR_006247825.1 other downstream 873 1056012 ~ 1064689 (-) False l3mbtl1
unassigned_transcript_2578 other downstream 45719 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247804.1 other downstream 279683 779085 ~ 785879 (-) True ndnl2
TU228038 other upstream 437494 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 437606 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 437606 1507810 ~ 1512329 (-) False smim29
TU228037 other upstream 437681 1507885 ~ 1512291 (-) False smim29
TU228040 other upstream 437681 1507885 ~ 1512291 (-) False smim29

Expression Profile