RNA id: XM_043224658.1


Basic Information

Item Value
RNA id XM_043224658.1
length 2961
RNA type mRNA
GC content 0.43
exon number 12
gene id sgk2a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1044820 ~ 1051472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCActcatatatgtatgtatcttTAAGACATCTTAAAATAGTGAAGCAAaggtttaaatataaatataatttggccaatttatatgcatttttaacttGTGAGGGCACCCGAAATGGACTCAAAAATGAGTCACTTTGTCTAAATGAAGGAATGCAATAGGCTTCTGCAGTTTTTATAAGCAGCTAATAAATACTGACCCAAATCCACACCCAGCTCtgcatttccaaaataaaaaccaaagattactgctttatttatgtatcatttttacaaagaaaaatgtcCCCAGGTGGACTTGCGTATGTCTGGGGACACTTTTGTTTCCGATGCGTGGTGAAGTATATACACGCGCGCACACGCATAAACAGCGCGTCTCTctggctcacacacacacacacacacacacacacaaacaaggcTCTCATATCTCTGCTGCACACATGGGTTGATCATTCACCCGGGCCTTCAGCCAAAGCAGCTGCATAACCAGACGCTTCTGAGACACGCAGAAAATGATGCACTTCAACAACACATGATCAGCGAAACTTCATCAGCTGTATATTTCACGCCGACGGGAACCTGAAGATCCGGTTTGTGAGCGGACCAGCGTACGAGCTCAGCGCAGATCTTCACGGATCCGACGGCCGAGAAACACAAGATGGCTCATTACGACCCATCCTTATCGTCTCCATCCGACGAGGTCAATCTGGGTGTGTCGGTCAATCCTCATGCCAAACCTACAGACTTTGACTTTCTGGCCGTGATCGGTAAAGGAACATTTGGGAAGGTGCTCTTGGCCAAACTGAAAGCCGATGGAAAGTTCTATGCCGTGAAAGTTttgcagaagaaagtcatattgaagaaaaaagagCAAAAGAACATAATGGCAGAGAGGAACGTGCTGCTCAAGAGCCTGAAGCACCCTTTTCTGGTCGGGCTGCACTACTCCTTTCAGACCTCGGAGAAGCTGTATTTTGTCCTGGATTACGTCAACGGTGGAGAGTTATTTTATCACCTGCAGAGAGAGCGCTGTTTCTCCGAGGCTCGAGCTCGCTTCTACACGGCGGAGGTGGCCAGTGCCATCGGATACCTTCACTCTCTCAATATAGTTTACAGAGATCTCAAGCCGGAAAACATTCTGTTAGACTATCAGGGTCACGTGGTGTTAACAGATTTCGGTTTGTGTAAAGAAGGCATAGAACCCGAAGGGACCACCACAACCTTCTGCGGCACTCCAGAGCCTCCATTCTACAGTCGGGACATGTCTGAGATGTACGACGCGATCCTTCACAAACCTCTGCAGCTGCCACCGGGGAAGTCCGAGGCCTCGAGTCACCTGCTCTGCGGACTCCTGCAGAAAGATCAGCATCGCCGGTTAGGAGCCATTGCTGATTTTTTGGAGATTAAAAATCACGTGTTCTTTGGCCCCATTAACTGGGACGACCTCTACCACAAGCGAATCACTCCTCCATATAACCCAAATGTGAGAGGCCCAGCAGACCTTCAGCACATTGACCCAGAGTTCACCAGAGAGATGGTGCCCAACTCCGTGGGCCGCACTCCGGAGCCCACCCCCAGCCTCGCCACCAGCAGCTCCAACGCCTTCAACGGCTTCTCGTACATCTCTGGAGAAGACGGCTTCCTCTGAGGAGTTTCTGGACACTGGAAAAACACTGGACTGTAATGAGGGTAAAAGCTGTGACACTGGAAATGCAACGAGTTTTAAGATGCCGTGCTCATTTTGCATTCATGAGAAGATGTTTCATCAGTACGCACTCGTGGTCATTGTGTAACATTGTGTGGACATTGGGGGGAGACAGATTTGTTGATTGCGCCACTGGCAAAGCAGCTATAGTTGCAAAAGCTGTAAAAGTCTAGGTTTCTGATCTTGCTCATCTTTTGGGGGTTGTGGATCTGCGTGCCTTACTCTTGGCAACATCCTCATTTAATCTTCTTCATCTGATTactgaaaagcattaaaaaccttcGCTTTGTAACGTTTTGTTGCAAAACAACCCGTAAGAGCATTTCTTCTGTTAAAAAGGCATTGAAAATGCCCCAATCGAGTCTATTTCATGTGTGATCCATTAATGTGAACTTTAATCTAACTGTGCTTTATGAAATCATGTATTAATGCTCAGAAAGTCTTCAGAAATGTGAACAACCATtgataaatgtatatgtttttatttctcattgaAGCTATACAGATATACTGCTCATAATGTTACATGTTTTAGTTTAGGGTCGATTTGTGAGACATGTCAGAATTCACcttgaaaaaaaagtgctgagATTTTACTTAATTTTCCTCTGATGTGGCACTTTTTGTTTCCGTATGACAAAGCAGCAagaattcataaaaacattacattcacaCCCAGGCAGAGGATCTCCGTCTATTTCAATAGTAACATTTATTGTACAAGACCGTGAGCAGAAACTTGTATCCTTGTCCTGCTGgtgataaatgtaaattaaaacgaAAAGAAAGAGTGTTTCATGAGAGTGCGGATCATGGTCttgtataaaaaattatttactggATTGACGCGCCTAAATAAAAGAACAAGCCATAAAATAGCGCTGTGCAAACTATGTTTGTGGGATGGTAACATTAAACTTAAACTTGCTACAGTTAGGAGCACAGATGCTGTgtgtatattgttaaaaatgtaatcaaagaAATGGACCATACTGACTTTTCAGGCATTTTCTATAAAGTTAGTGTACTATGTGGGAGGTGCAATGCAAGATAAGCAGTCTTAAAGGCACTGTAATCAGCAAAGATGAATATATACAAATGTGTGCTTTCCACACTGTACAGCAACTTTTGAAAAAGTTAGGATATAATGTATACTCTCTCTGACGTTTCTCCCTGTTttgagacatttaaaaatgattttagaattttattgaactctataaaactattaaaagtgAAGATTGCATTCAAACTC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247797.1 lncRNA downstream 81243 960274 ~ 963577 (-) True LOC122328476
TU227875 lncRNA downstream 145054 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 162636 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 162636 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 178073 865477 ~ 866747 (-) False vgll4a
TU227992 lncRNA upstream 154007 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 154007 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 155228 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 337890 1389362 ~ 1393135 (-) True G153984
XR_006247811.1 lncRNA upstream 368385 1419857 ~ 1420454 (-) True LOC122328606
XM_043224095.1 mRNA downstream 185 1038921 ~ 1044635 (-) False mybl2a
XM_043224093.1 mRNA downstream 211 1038921 ~ 1044609 (-) False mybl2a
XM_043224094.1 mRNA downstream 211 1038921 ~ 1044609 (-) True mybl2a
XM_043224100.1 mRNA downstream 7552 1032492 ~ 1037268 (-) True adtrp1
XM_043224097.1 mRNA downstream 12469 1024657 ~ 1032351 (-) False ptpdc1b
XM_043224649.1 mRNA upstream 1905 1053377 ~ 1064774 (-) False l3mbtl1
XM_043224648.1 mRNA upstream 1905 1053377 ~ 1064689 (-) True l3mbtl1
XM_043224651.1 mRNA upstream 1905 1053377 ~ 1063449 (-) False l3mbtl1
XM_043224650.1 mRNA upstream 1905 1053377 ~ 1063426 (-) False l3mbtl1
XM_043224654.1 mRNA upstream 14090 1065562 ~ 1070204 (-) True si:ch211-10d23.5
unassigned_transcript_2578 other downstream 24977 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247804.1 other downstream 258941 779085 ~ 785879 (-) True ndnl2
XR_006247825.1 other upstream 4540 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 456226 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 456338 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 456338 1507810 ~ 1512329 (-) False smim29
TU228037 other upstream 456413 1507885 ~ 1512291 (-) False smim29

Expression Profile