RNA id: XM_043224687.1


Basic Information

Item Value
RNA id XM_043224687.1
length 4016
RNA type mRNA
GC content 0.50
exon number 27
gene id ube4b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8999326 ~ 9018982 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGACCCCAGATCCAAAATGGCCGCGTCGGTGTTTTGACGAATAatacttttgtgtttgtttcattcTTAACAGAAACCGAAGATAACCCTTTTCGAGCGTAAAAAAACAGCAACGCGcgtttgatgttttaatataaagatTTAAATTAGACAATCACAGCTCATTGATATTTGTTTTATGGTTCAGACTATGCACTTTTGGTGTTTATAAGGAAGCTAGCTGACTGGCTAGCAACATAATTAAgctgaaaattaaaagaaaggCAATGGAGCAGCTGAGTCCTGAAGAGATCCGTAGAAGGCGACTGGCCCGGTTAGCCGGAGGGCAGACGTCACAGCCCAATACCCCTCTCAGCACCCCTTTGACATCCCCACAGAGAGAAACTCCCCCAGGACCCTTGCCAGGGCCCTCCGGGGCATCATCACAGCCTGTCCCACCAGCTCCATCTCACACTCTAGGCCTAAATGCCCAAAATGTCACCCCTGCCACCTCTCCTATGGGGGCCTCGGGGGTTGCTTACCGCAGCCAGAGCAGCGAAGGGGTCAGCTCTCTCTCTAGCTCTCCATCTAACAGTCTGGAGACACAGTCCCAATCCCTGTCCCGCTCCCAGAGCATGGACATCGACACAGCCTCCTGCGAGAAGAGCATGTCCCAAGTAGATGTGGACTCAGGAATTGAGAATATGGAGGTGGAAGACAGTGATCGCAGAGAGAAAAGGAACCTGGCTGAGAAGGATTCCTCATCCAGCTCTGATGTCTCTGAAGAGCAGGCTTTGCACCTCATCTGTAAGATCTTGCGTGTCTCTTGGAAGGAACAGGACCGTGATGTCATCTTCCTTCCCTCACTTGCTGCTGAATTCCAGAAGAACCCTAGGGATGTTTACTCTGACTTCAAAGACCTGATCGGACAGATTTTAATGGAGGCTTTAATGATGTCCACCCGATCACGTGACTGTAACCCATTCGCCAGCTTGACCGCCACATCTCAGCCAATTACCGCTGCCAGATCCCCAGACCGTCACCTGACTCTCGTCCCACCCTCCAGCCAGAGCGGCAGTCCCATGATGCCCTGCGCTGGTTCATTCGGTGCCAGCTCTCTTTCCAGcCTGGGTGCATCCGGAGGAGGGATGGCTGGAGACTCAGGTAGCGACCGCTTTACCATAGAGTCCTGTAAAGAGACGGAGATGCTCAACTACCTCATCGAGCGTTTTGACAGTGTGGGAATGGAAGAGAGGAAGGCCCCAAAGatgtgCAGCCAGCCAGCTGTCAGTCAGCTGCTTAGCAACATTCGTTCCCAGTGCATTTCCCATGCTGCACTAGTGCTTCAAGGTGCCCTCACACAGCCCAGGGCCCCTCTACAGCCCTCCCTGCTGGTTCCCTACATGCTGTGCCGGAACCTTCCGTACGGCTTCATCCAGGAGTTGGTGCGCATGACTCACCAGGAGGAGGAGGTGTTTAAACAGatcTTCGTTCCCATTCTTCAAGGGCTTGCTTCAGCTGTTAAAGAATGTTCTTTTGACAGTGACAACTTCAAGTTCCCTCTAATGgcttTGGCTGAGCTCTGTGAAATCAAGTTTGGGAAGACTCACCCTGTATGCAATTTGATCACCTCTCTGCCATTGTGGTGTCCTGATCCTCTCAGTCCCGGGACAGGAAGAGAAATTCAAAGACTCTCCTTCCTTGGAGCGTTCTTCAGTCTTTCTGTGTTTGCTGAGGATGACACTAAAGTGGGAGACAAGTACTTCTCAGGCCCTGCCATCACTATGGAGAACACCCGTGTGGTCAGCCAGTCACTGCAGCATTATCTGGAGTCTGCGAGGGGAGATCTGTTTAAAATCCTGCACAACATCTTGTTGAACGGAGAGACAAGGGAAGCAGCTCTGAGCTACATGGCAGCTCTGGTGAATCGTAATGTGAAGAAGGCTCAAATGCAGACCGACGACAAGCTGGTGTCCACAGACGGCTTCATGATGAACTTCCTGTGGGTGTTGCAGCAACTCAGCATGAAGATCAAGCTGGAAACGGTGGATCCTCTCTACATCTTCCACCCCAAGTGTCGGCTGAATGTCAGCACAGAAGAGACCCGGCTCAAAGCCACGATGGAGGACCTGAAGAGCTGGCTCGCTGAGCTGCATGAAGACCCGTCCAAGTTCTCGGAGCCCAAGTTCCCAACAGAGTGCTTCTTCTTAACGCTACACGCACATCATCTGTCCATCCTCCCGTGCTGTCGCCGCTACATACGGAGGCTGAGGGCCATCAGGGATCTGAACAGaacTGTGGAGGAGCTGAAGAACAGTGAGAACCAGTGGAAGGATTCCCCTTTGGCAAGTCGTCATCGGGAGATGCTGAAGAGATGTAAAACACAGCTGAAGAAACTGGTGCGCTCTAAAGCCTGCGCAGACGCAGGGCTGCTGGACGAGAACCTGCTGCGCAGATGTCTCCAGTTCTTCAGTATGCTCATCCAGCTCATCCTGCGTATGGTGGAGCCTGCCTACCCACACGTAACCCTGCCTCTGAACCCAGAAATCCCCAAAAGCTTTGCAGCACTGCCGGAGTTTTACATTGAAGATGTGGCTGAGTTCTTGCTTTTTATTGTGCAgtactTTCCACAGGTTCTCTATGAGCCGTGCACTGAAGACATTGTGACCTTCCTGGTGGTCTTCATTTGCAGTCAAAATTACATAAAGAACCCATACTTGATTGCCAAGCTGGTGGAGGTGCTGTTCGTCACCAATCCTGCGGTGCAGCCGCGCACTCAGCGTTTCTTTGAGATGATGGAGAACCACCCACTGTCTGTCAATCAGCTTGTACCAGCACTCATGAAGTTTTACACAGATGTGGAGCACACTGGAGCCACAAGCGAGTTCTATGACAAGTTCACAATCCGTTACCACATCAGCACCATTTTCAAAAGCCTATGGCAAAACATTAACCACCAAGGCACCTTCCTCGAGGAGTTCAActcTGGTAAACAGTTTGTGCGCTACATTAACATGCTAATTAACGATACAACCTTTCTGCTGGACGAGAGTTTGGAGTCTCTGAAACGCATCCATGAGATCCAGGAGGAGATGAAGAATAAAGAGCAATGGGACCAGCTTCCCAGGGAGCAGCAGCAGAGCCGACAGTCCCAGCTGACTCAGGATGAGAGAGTATCACGATCGTACCTGGCTTTAGCAACAGAGACGGTGGATATGTTTCATATCCTCACCAAACAGGTCCAGAAGCCATTCCTCAGGCCTGAACTGGGTCCTCGTCTGGCTGCCATGTTGAACTATAACCTGCAGCAGCTATGCGGGCCTAAATGTCGAGACTTGAAGGTGGAAAACCCAGAAAAATATGGTTTTGAGCCAAAGAAGCTCCTGGATCAGCTCACTGACATTTATCTGCAGCTGGACTGTGCCCGATTTGCTAAAGCCATCGCAGATGACCAGCGGTCATACAGCAGGGAGTTGTTCGAAGAGGTCAtttcaaaaatgagaaaagcGGGCATAAAATCCACCATTGCTATTGAGAAATTTAAACTGCTGTTGGAGAAGGTGGAGGAGATAGTGGCCCGCAATTCTCAGTCCGAGATGGATTACAGTGACGCCCCAGATGAGTTTAAAGACCCACTGATGGACACTCTCATGACCGATCCCGTGCAACTTCCCTCTGGCAACATCATGGATCGAGCCATCATTCTGCGACACCTCCTGAACTCTCCCACTGACCCCTTCAACAGACAGCCTCTCACCGAGAGCatgctggaaccagTCCCAGAGCTGAAGGAGCGCATCCAGGCCTGGATGAGAGAGAAGCAGACCGGCCGTATTTGAGTTTTCTCAGTGAGCCAAGCTTGCCCCgcagtttaaatgttttcaccACGCTGGAAGTGAACTGAAGAGtggagaaagaggaaaaaaaatgacagtaccCAAATTGTTTTCCCGCTTTTATCCTCTTTATCGAGCCGCTGTCTGACAGGCTCATGGTTCTAAATTGAAACATAATAAAGTTTAgacttttgaaaca

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0034450 ubiquitin-ubiquitin ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230942 lncRNA downstream 370223 8628699 ~ 8629103 (-) True G155933
TU230786 lncRNA downstream 373684 8624926 ~ 8625642 (-) True G155825
TU230759 lncRNA downstream 466399 8526402 ~ 8532927 (-) True G155803
TU230697 lncRNA downstream 616719 8307279 ~ 8382607 (-) True G155759
TU230649 lncRNA downstream 821808 8176699 ~ 8177518 (-) True G155737
XR_006247890.1 lncRNA upstream 51403 9070384 ~ 9072944 (-) False LOC122329247
XR_006247891.1 lncRNA upstream 51403 9070384 ~ 9072938 (-) True LOC122329247
TU230977 lncRNA upstream 60552 9079533 ~ 9097263 (-) False ctnnbip1
TU230983 lncRNA upstream 134099 9153080 ~ 9153502 (-) True G155968
TU231000 lncRNA upstream 169532 9188513 ~ 9188897 (-) True G155979
XM_043224245.1 mRNA downstream 1820 8934480 ~ 8997506 (-) False kif1b
XM_043224222.1 mRNA upstream 545 9019526 ~ 9021081 (-) True LOC122328502
XM_043224220.1 mRNA upstream 4027 9023008 ~ 9026430 (-) True nmnat1
XM_043224217.1 mRNA upstream 10739 9029720 ~ 9062901 (-) False clstn1
XM_043224219.1 mRNA upstream 10739 9029720 ~ 9062900 (-) False clstn1
XM_043224215.1 mRNA upstream 10739 9029720 ~ 9062899 (-) True clstn1
TU230970 other downstream 72716 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 79601 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 79601 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 370935 8625758 ~ 8628391 (-) True G155827
TU230763 other downstream 447349 8545394 ~ 8551977 (-) True G155807
XR_006247818.1 other upstream 177246 9196227 ~ 9209964 (-) False ccdc187
TU231373 other upstream 782804 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 782804 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 813147 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 813147 9832128 ~ 9833682 (-) False zgc:153284

Expression Profile