RNA id: XM_043224688.1


Basic Information

Item Value
RNA id XM_043224688.1
length 4331
RNA type mRNA
GC content 0.49
exon number 26
gene id uba1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12157497 ~ 12174386 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTTATCCGAGCAGCTCCGCCCCTGTGCCAAAGCTGCCATTTTGGTTTTGTTCCGTCCGCTGAAACAAAACCAGAAACGCGATACGGGCAGGCAGCAGACCGAACGACACAGTGACTCGGCAGGATAGTGAAGGGGCTTTACTCGCAGCATCTCGCCCAGCGCTGTTCGTGCTGTTGCCGTCCGTTTTCTCCTCGCATCTACATCAGCCTGCAATCCGCACCATCTAAGTTAGTTTCACACGAGGAGCGGTTTGCTGACACTGAGAGTGGACTGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCGTGTCAGGATCAGAGACGAAGACGGGATCCCACTGCTCCTCCTCTAACTCTGTCAGAACCGAACTGTCACACACACCAGCTAACGGCATGGCTAAGAATGGAAATGATGCTGAGATCGACGAGGGCTTGTACTCCAGACAGCTgtACGTATTGGGTCATGATGCTATGAAGCGCATGCAGAGCTCCAATGTTCTGATCTCAGGGCTGCGAGGTTTGGGTGTTGAGATAGCCAAGAATGTCATTCTGGGCGGAGTCAAGAGCGTCACCCTGCATGACCAGGATGTGGCTGAGTGGAAGGACCTTTCTTCACAGtTTTACCTGCGTGAGGAGGATCTTGGGAAGAACCGTGCAGATGTCAGTCAGCCTCGACTGGCAGAGCTCAACAGCTATGTGCCTGTAACTTCCTACACTGGCGCCCTCACCAATGAATACCTGACCAAGTTTCAGGTTGTTGTGCTCACCACCGCCAGCCTCGATGAGCAGACACGCATCGGTGACATCTGCCATAGCAATGGCATTAAGTTGATCGTGGCAGACACACGTGGCCTGTTTGGGCAACTATTTTGTGATTTTGGGGAAGAAATGATGGTGTTTGACACCAATGGAGAGCAGCCACTGAGCGCCATGATCTCAATGATCACAAAGgACAGTGCTGGTGTGGTTACGTGTCTGGATGAAGCGCGGCATGGATTTGAGAGCGGAGATTTTGTCACTTTCACAGAAGTGCAGGGCATGACAGACCTCAATGGCTGTGAACCAATAGAAATCAAGACACTGGGTCCTTACACCTTCAGTATCTGTGACACCAGCTCATTCTCCGACTATGTGAGAGGTGGTATTGTCACACAAGTGAAGATGCCCAAGAAAGTTGCCTTCAAATCCCTGTCCTCCTCCTTGGCCGAACCAGAGTTCATGCTGACTGATTTTGCCAAATTTGATCGTCCAGGCCAACTGCACATGGGCTTTCAGGCACTGCATGCATTTGAGAAGAAGCATAGTCGTCTACCGAAGCCCTGGAATCAGTCTGATGCGGACGAGCTTGTGGCTCTGGCTGAAGAGGCAAATTCTGCACAGACCGGGTCTGCCAAGCAAGAGCAGCTGGACCAGGCAATAATCAAAAAACTGTCCTGTGTGGCTGCTGGAGATCTGGCACCCATCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAGgcTTGCACAGGGAAGTTTATGCCCATCATGCAGTGGCTGTATTTTGATGCCGTGGAGTGCTTAACTGAAGCTGAGGATACCGTTCTGACCGAGGAAGAGTGTGCTCCTAGGAACTGCCGCTATGATGGCCAGATTGCTGTTTTTGGGTCCAAGCTGCAGGAGCTGTTAGCCAAACAGCGATATTTTCTGGTTGGCGCTGGAGCTATTGGTTGTGAGCTGCTGAAAAACTTCGCTATGATGGGCTTGGCCAGCGGTGACGGAGAGGTCATAGTTACTGACATGGACACCATAGAGAAGTCTAATCTCAATCGACAGTTCCTCTTTAGGCCTTGGGACGTTACGAAGATGAAGAGCGAGACCGCCGCTGCAGCCGTGAAGCAGATGAACCCATCGGTCCGCATCACGGGCCATCAGAACCGCGTAGGACCTGACACTGAGAAGGTCTATGACGACGACTTCTTTGAAAGCCTTGATGGAGTGGCAAATGCTCTTGACAATGTAGATGCCCGTATGTATATGGACCGGAGGTGTGTGTACTACCGTAAGCCATTGCTGGAGTCTGGTACTCTCGGCACCAAAGGGAACGTACAGGTGGTCATTCCCTTTCTCACAGAGTCGTACAGCTCCAGCCAGGATCCTCCAGAGAAGTCTATTCCTATCTGCACTCTCAAAAACTTCCCTAATGCAATCGAACACACCCTTcagTGGGCTCGTGACGAGTTTGAAGGACTTTTCAAACAGCCTGCTGAAAACGCCTTGCAGTATCTGACAGACTCAAAGTTTATGGAGCGCACACTGAAGCTCCCTGGAGCTCAGCCGTTGGAGGTGGTGGAGGCCGTATACAAGAGCCTGGTGACAGATTACCCACGCAGCTGGGAAGACTGTGTAGCCTGGGCCCGCAACCACTGGCAGTGTCAATATAACAACAACATCCGTCAGCTACTGCACAATTTCCCTCCAGACCAGCTTACAAGTTCTGGGGCGCCATTCTGGTCAGGTCCAAAAAGATGTCCCCATCCATTAGAATTCAGCACTAACAATGACCTTCACATGGACTACATTATGGCAGCGGCTAACTTGCTTGCTCAGTCATATGGCCTGCCAGGCTCCACTGACCGTTCTGCTCTGACTAAGCTGCTGCAGGATATTAAAGTGCCTGAGTTCATACCTAAATCAGGAGTCAAGATCCACGTGTCTGATCAGGAGCTGCAGAGTGCCAATGCATCAATCGATGACTCTAGGCTTGAAGAACTGAAGACACTGTTGCCTTCTACAGAAGCATCTTCTCAATTCAAGCTCTGTCCCATTGactttgaaaagGACGATGACGCAAACTTTCACATGGACTTCATTGTAGCAGCTTCTAATCTAAGAGCAGAGAACTACGACATTCCACCTGCAGATAGACACAAGAGCAAACTCATTGCTGGAAAAATCATTCCAGCAATCGCCACAACGACAGCTGCCGTGGTGGGTCTGGTGTGTCTGGAGCTGCTGAAGATCGTTCAGGAGCACAAGAAGCTTGAGTCCTACAAGAACGGCTTCATGAACCTTGCTTTGCCTTTCTTCGCCTTCTCTGAGCCCATAGCTGCTCCAAAGCACAAGTACTATGAGATTGATTGGACGCTTTGGGACCGCTTTGAGGTGAAGGGCATTCAGTCCAATGGCGAAGAAATGACACTCCGACAGTTCTTGGACTATTTCAAGAATGAACACAAACTGGAGATCACTATGCTCTCTCAGGGAGTTTCCATGCTCTACTCTTTCTTCATGCCTGCAGCCAAGCTGAAAGAACGGCTGGACCTGccgaTGACTGAGATCGTGACTAAGGTGTCCAAGAAGAAGCTGGGGAAGCATGTTAAAGCACTAGTTTTCGAGCTCTGCTGCAACGACGAGACAGAAGAGGATGTAGAGGTCCCCTATGTCAGATACACCATCCGCTGAGAGGGTTGTTGGGGTAGGGAAGGGGACCGGTCAGAGGCGGGAGAGGGCGGCCCACTGGGGTTGGGGGAGTATCAGTATGCTTGGAGAGCCCAAAGAAAAAactattctttttcttttctaaatcaGTTATTAAATCCTATAAGTATTATATCTCAAACACCCCTCTTTCCCTATTGGACGAGCTCTCTAAGGTATGAATCAGTCAGGCTGGTTAAGTTTAGGATTACGGGGAGCATGTGAATTTTTGGCTGTAACTTATTTGACCTGGTTGTTGTAACGCACAGCTTGAGTGTATAAATTTATCCGTACACCACTCGTCACTCCCTCCCTCTGAATCATCTTCACACCAGTCTCTGTTCCTGTCCTCATGATTCTTCTGTGGGCAGCACCATCTTGCTTTGTATTCTGAAGTAAAATACTGACTGATGCCAAAAAAAGGAGTACAAAGGAGAGAAATCAGTTATGTTCACTTAATTGTTTCAATTCACTGCCTTGGCTTGATGTCACCTTTAAATGTAACGTAAAGCGCTCTTTTTGGCCAAGGTCTCCGAGTGAGTTGGTCCACTTACTGAACTCCTGCTCTCCCATAGGCCCAGTGGGAACATCCCTTTGCCTCTCTGGCTTCTGTATGGGTTGGGTTCAGGAACTTGCACATAACCTTTTCTTTTCtcccccatttttttttttttttttttttttttttgtttctggtgTACACCTTGTAGAACATAAACTCTGTATTCTTTCTACTTTGTtaaactccaaaaaaaaacaaaaacaaaactaaaaaaacattacagtaaaaaagcgATTTTACTCTGTAATGGGAGCACTTAGTGTGTTAGTGaataaagtttaaaacatt

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K03178 UBE1, UBA1; ubiquitin-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247800.1 lncRNA upstream 122157 12030146 ~ 12037888 (+) True LOC122328486
XR_006247799.1 lncRNA upstream 125088 12030146 ~ 12034957 (+) False LOC122328486
TU232372 lncRNA upstream 127205 12030189 ~ 12032840 (+) False LOC122328486
TU232326 lncRNA upstream 187123 11946684 ~ 11972922 (+) True G156881
TU232272 lncRNA upstream 233670 11827741 ~ 11926375 (+) True G156843
TU232394 lncRNA downstream 144 12174530 ~ 12174915 (+) True G156933
TU232392 lncRNA downstream 29870 12204256 ~ 12205395 (+) True G156931
TU232390 lncRNA downstream 29958 12204344 ~ 12205395 (+) False G156931
TU232612 lncRNA downstream 65463 12239849 ~ 12241401 (+) True G157079
TU232614 lncRNA downstream 71488 12245874 ~ 12246101 (+) True G157081
XM_043225440.1 mRNA upstream 3745 12113746 ~ 12156300 (+) False camkvl
XM_043225441.1 mRNA upstream 3745 12120615 ~ 12156300 (+) True camkvl
XM_043225442.1 mRNA upstream 3745 12120619 ~ 12156300 (+) False camkvl
XM_043225152.1 mRNA upstream 48864 12103269 ~ 12111181 (+) False adnpb
XM_043225351.1 mRNA downstream 943 12175329 ~ 12182648 (+) True arhgef3l
XM_043225352.1 mRNA downstream 8711 12183097 ~ 12187125 (+) True usp21
XM_043225168.1 mRNA downstream 14108 12188494 ~ 12204119 (+) False ccdc30
XM_043225166.1 mRNA downstream 14135 12188521 ~ 12204119 (+) True ccdc30
XM_043225169.1 mRNA downstream 14135 12188521 ~ 12204119 (+) False ccdc30
unassigned_transcript_2622 other upstream 641509 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 644174 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 646199 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 647347 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 983012 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1879978 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1882299 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2125315 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2509604 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2537761 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile