RNA id: XM_043224691.1


Basic Information

Item Value
RNA id XM_043224691.1
length 1691
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC122328766
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10662263 ~ 10674097 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACGCACGTACTTTCTCGAGATCACCTCCCCTCTGTTCACTTCACCGCACCAACCTAAAGGGGAAAAGAGTCCCGTTTACTGTGCTCGGCTTGTTTACATTCTTCACCATCACATTTACCATATTCTTCAGAAGTCAGTCGTCAGAAAGCAGGAAGgATGTCATTGTATCCATCCCTAGAGGACCTTAAAGTGGACAAGGTCATTAGGGCACAGTCCCAGTTTGCCAATGCCACCTCCAGCACCCCAGCCATCACTCAGGGTGTTTACCAGCCACAGCCTGCCACACAGGGGATGCCAAGCTCAGCTCTGTATCCCAATCTGGAGGAGCTGGGAGACTATATGGGCCTGAGTCTGAACAGCGATGAGGTCCAGAGAAACCTGGCGCTGGTCCCGGTGGCTGACAATCAAGTGGCAGTGCCAAGTTCTGTGGGTGGCATGGTGCGGCCCGTGACCGGTGCAGACGTGGGCATCAGGAGGGCAGAGATTCGTCCAGGTCTTCGGGAGGTCATCATCTGCAAAGACCAGGAAGGAAAGGTCGGGCTTCGACTCCGAGATATTGATAATGGAGTGTTTGTCCAGCTGGTGCAGGCGAACTCTCCTGCGGCGTTGGGTGGCCTGCGTTTTGGAGATCAGGTTCTGCAGATCAATGGGCAGAACGTTGCTGGCTGGAGCTCAGATAAGGCCCACAAAGCTCTGAAGGCAGCAGCTGAACAGCGCATCGAGCTCATTGTCCGTGACAGACCATTCCAGCGTACAGTCACAATGCATAAGGACAGCTCTGGCCATGTGGGCTTCATCTTCAAATCTGGACGAATCACATCTCTAGTGAAGGATGGTTCTGCTGCCCGCAATGGTTTGCTCACCGAGCACTACATCTGTGAGATCAACGGCCAGAACGTCATCGGACTCAAGGACACTCAGATTAAAGACATCCTCACCACATCTCCCACTGCCATGACCATCACCATCATGCCTAAATTTATCTACGAACACATGATTAAgaaGATGTCAAGCGGCCTGTTGAAGTCCTCCATGGATCACTCTGTGCCTGAGGTCTGAACACAggagaccacacacacacagcccctTCCACAATGCCTACAATCTCTTGCCTTCCCATTGGAGCCTTCCACAACATGGGTCGTCTATCACTGATTGGATAAACCTCCTCAATCACATTCATTTATAACATGTAAAAACTGCCTTTTTTCTATTTCACTCGTTGGCTGTTATCGTTTTGCCTTCTAGTTCTTGATTCTGTCCTACATGTCATTGTTGCCATTGTTTAATTGTCATATtacatgttatataataataatccattGTCATTATTGAGTAGTATTatctgattgttttattttggctgaGGGGCAAGGGGATAAAAACTGAACCTGAGCTTCCGTTTTGGAGAGCATTAGCTTCAACACTCCACTTTTCAATTCTTCCCACTATGCACAAACACTTTctttccatttctgtttttgtttttttattttttatcgaCCATCTATATGCCAAGACAGCTGTATTCTGCCAGAAGGAATCTTGGGCCAGaatttataaatgcaacaaCTCATTTCGTATTGATTTTGAACTTGGTTTTTAGGTGTTTAATCTTTGATAATATTCTCTGTCATTATCCTGTAAATGTTAGtgtctctaaaaaaaaaaatttatatacgAATGTAA

Function

GO:

id name namespace
GO:0045545 syndecan binding molecular_function

KEGG:

id description
K17254 SDCBP; syntenin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231691 lncRNA downstream 119376 10540899 ~ 10542887 (-) True G156452
TU231560 lncRNA downstream 273648 10387873 ~ 10388615 (-) True G156364
TU231562 lncRNA downstream 274573 10386954 ~ 10387690 (-) False G156364
TU231559 lncRNA downstream 274767 10386954 ~ 10387496 (-) False G156364
TU231551 lncRNA downstream 304646 10355954 ~ 10357617 (-) False LOC122329224
TU231718 lncRNA upstream 22355 10696452 ~ 10696677 (-) True G156468
TU231719 lncRNA upstream 24500 10698597 ~ 10700224 (-) True G156469
TU231724 lncRNA upstream 28499 10702596 ~ 10702821 (-) True G156471
TU231736 lncRNA upstream 53867 10727964 ~ 10728248 (-) True G156478
XR_006247879.1 lncRNA upstream 206494 10880591 ~ 10882652 (-) True LOC122329022
XM_043224620.1 mRNA downstream 79833 10568565 ~ 10582430 (-) False LOC122328736
XM_043224621.1 mRNA downstream 79834 10568565 ~ 10582429 (-) False LOC122328736
XM_043224619.1 mRNA downstream 84870 10568565 ~ 10577393 (-) True LOC122328736
XM_043224136.1 mRNA downstream 136891 10522098 ~ 10525372 (-) True LOC122328446
XM_043224135.1 mRNA downstream 141191 10516716 ~ 10521072 (-) False LOC122328445
XM_043224764.1 mRNA upstream 1583 10675680 ~ 10678150 (-) True LOC122328798
XM_043224763.1 mRNA upstream 4908 10679005 ~ 10686715 (-) True LOC122328797
XM_043224762.1 mRNA upstream 15567 10689664 ~ 10694950 (-) True LOC122328796
XM_043225474.1 mRNA upstream 31886 10705983 ~ 10709169 (-) True cdc42l2
XM_043224777.1 mRNA upstream 35249 10709346 ~ 10727516 (-) False dnmt3bb.2
TU231532 other downstream 294894 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 422990 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 430344 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 828581 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 828630 9832128 ~ 9833633 (-) False zgc:153284
TU231697 other upstream 1587 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 426647 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 843913 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 1067303 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 1067303 11741400 ~ 11746620 (-) True LOC122328546

Expression Profile