RNA id: XM_043224733.1


Basic Information

Item Value
RNA id XM_043224733.1
length 4408
RNA type mRNA
GC content 0.44
exon number 15
gene id dvl1a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9156494 ~ 9186875 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTTCCTGTTTTACTGGCGTTCAGAGAGAAACATTGACGCTGTGATAGAGACGCGCAAGCTCCGATTATGTCTGGAACCGCTCGCTCCGTCCAAGACCAGGATTTTTGTTTGCCTACGTGAAACCGGCAACCGGCAATGTCGCCTTATAGCGCATATATGGCACTTGACGAGTTATAgcctacaaatatatttaaatctcgCTGCTGCAACCCTTGCTCCTTCTTCTGTCAATGATTGTCCTACCCATATAAGCCTACTCATGGCGGAGACCAAAATTATATACCATATCGACGAAGAAGAAACCCCTTATTTAGTGAAACTGACGGTTTCTCCGGAAAAAGTCACGTTGGcggattttaaaaatgtcctcaACAACCGTCCGGTCAACAGTTATAAATTCTTTTTCAAATCTATGGATCAGGATTTCGGAGTCGTCAAAGAAGAAATCTCTGATGATAACGCCAAGCTGCCCTGCTTCAATGGCAGAGTGGTGTCCTGGCTGGTGTTGGCTGAGGGCACACACTCGGACGGGGGATCTCAGTGCACAGAGAGCCACAAAGAGCTGCCGCCACCCTTGGAGCGAACTGGAGGGATTGGAGATTCCAGACCCCCCTCTTTCCAtgccAATGCGGTGAGTAGTCGGGATGGATTGGACACCGAGACGGGGACGGAGTCTCTCCAGAGCCAGCGGAGAGAGCGGGAGAGGGAGCGAGCTCACAGAAGGGCACGAGAAAtTCCTCGCGTGAATGGTCACTCGAAAACAGAGCGAGTGAATCGTGACTCAGCTGTTGGTTATGACAGCACATCGGTGATGAGCAGTGAGCTGGAGTCCAGTTCTTTTATCGACAGTGAGGAAGATGAGGATGGAAGCAGCCACAGACTTAGCAGTTCAACCGAGCAGAGCTCTTCATCACACCTCATGCGTAGACACAAACGAAGACGACGGAGGCAGAAAGTCACCAAAATGGACAGGTCCTCGTCCTTCAGCAGTATTACAGACTCCACAATGAGCCTCAACATTATCACCGTCACTCTCAATATGGaGAAGTACAACTTCTTGGGTATCAGTATAGTTGGTCAGAGTAATGACAGAGGAGATGGAGGCATCTATATTGGCTCTATTATGAAAGGTGGAGCGGTGGCAGCTGACGGCAGGATTGAGCCTGGAGACATGCTGTTACAGGTCAATGACGTGAACTTTGAGAACATGAGTAATGATGATGCTGTCAGGATTCTGCGGGAGATCGTCTCTAAACCTGGGCCAATAAGCCTAACAGTGGCGAAATGTTGGGACCCCTCTCCTAGAAGCTACTTCACTATCCCTAGAGCCGAGCCGGTGAGACCCATCGACCCTGCTGCCTGGATCTCACACACTACTGCACTTTCTGGACCATACCCCCATTATGAGTTTGATGACCTCCCACTTTCAGTGTCAAAAACAGATATGGCGACTATAGTAAAAGTTATGCAGCTACCAGATTCAGGGCTGGAGATTAGAGACCGAATGTGGTTAAAGATCACTATAGCCAACGCCGTCATCGGGGCTGATGTTGTCGACTGGTTGTTCTCACGGGTAGAGGGCTTCAAGGACCGCCGGGATGCTAGAAAATACGCCAGCAGTTTGTTGAAACACGGCTACCTGAGACACACAGTCAATAAAATCACCTTCTCAGAGCAGTGCTACTACACCTTTGGAGACCTGTGCCAAAATATGGCTTCTCTCAATCTGAATGAGGGATCTAGCGGTGGGGGCTCTGACCAGGATGGTcttgctcctcttcctccaccaGGAACCAACCCCTGGCCCCTCGGCGGTCAGCCCTACCCTTACCCGGGTTACCCCACTCCTCCACCGGGCTTCCCTCCTGGATACTCGGACCCTTGTCATAGTTTTCACAGTGGCAGTGCAGGCAGCCAACAGAGCGAAGGTAGCAGAAGCAGTGGTTCCAACCCCAGTGCTGGGAAAGGCCGGAGACCCTCCCCTCGAGAAAAGGACCATAAGGCACCGTGCTGTGGGGGCAGCGAATCAGAAATGGGAGCTTGGGTGGTAAGGAGGGGTGAGAGAGCATCCAGTCAGCTGAGTCATCAAAGCCACAGCCGCTCTGCCGCCAGTCAGGCCCACTCCAGCCACAGTTACGCTCACTCTGGGTACAGCCACGGCCAGTGTCTCAGCATCTCGCAGCATAGCCACAACTTCACCTACAGCCACGCCCCTTTCATCCAGCCCAATCATCTGTCCTGTGCCCACAGTGAGAGAAGTCACGGCTCTTCGTATGGCCCTCCGGGTCTGCCCCCTCCGTACTGCCTCGCTCACCTCGCCCCCAAAGCGGCAGCCAGCAACAGCCCACCTGGGGCTCCCCCTGTCCGGGAACTAGGAAACGTCCCACCAGAACTCACCGCCAGTCGGCAGTCGTTTCAACATGCTATGGGCAATCCTTGTGAATTTTTTGTTGATATTATGTGACAGGAGAGTGCCTTCAACCCTTTCAGAGCACAAGGCCTACTTCCCGCAGTTTGCTTCATGAATTTTTGCTACTGACGATCCCTGCACTGAGAATGTACAAACTGACAGCGcaaatttaaagggacagtttatCCAATAATGTAAGTTCTGTCTCTTACTCATAtcaagtttctttcttctgtggaacaaaaaaaaaatgactgttgTAATTGTTAACTATATTGTTTCagtaattcaaattattatttattttttttttttatacgttaAAGCAATTTACAAACAATAAACTAAGCAGTGGTTTTAAGatgatttaaactaaatttaatttttttaaatgaacaaatttcataaaaaataaatatagaaatattagaaaGTATTAAATTCACATGaagtaaaactttaaaatcaagctaactaaatgtattaatataataatataatagcaaataaatagTACTTAACACTGCAAATTTTAAATCCTTAACATATTTTATCCAGAATTGTCTGACAACTCTTTTCTTTATAATGAGGGTGAATAGGGACAAGGGTGAAATGACAAAATAGACTATAAAAGGAGAAGGAtggaaggaaagagaaagagaagccTATCATTAGTTACCACCTTAGCTTTCTGTGACCAAAATTATTGTATGTCTTCAAAGGACATTAAAAGTATTGCACACTTTTGCTGCATGGACTTTGAAATTTTGGGACAGCCCCAGTCCGCTTTTACTTCTGATATGTGGAAAGGAATGCccagatatttttttacaaattcactttttgtgttccacagaagagagaaagcaCTTGAGGACAACAAAAACCTGAGAGTGAActaatgatgacagatttttcatttttaggtcaactctttctttaatGTTCATTCAATGTTATTTAGATCACCGAaggacacttaaaaaaaaaaaaaaaagcacaaccgCAGAGTTAATTTAAACTCTGACACAAAAACTACAATactgcagcagcagcacaggATAACACAACTAATAAGCTTTTAACAGGAAAGTCAGTGTATCAGACTGTCTGCTTCTTATACTCCGCTGCTCTGCACTTTGCACAAGTTACAAGCCAGACAACTGGCATGACTCTTTACACAGTCcatacttttaaatgcattcacgctttgaggttttttttcctcacacacTTGCATTTGACTTTATATTCACAAAGTCATAACCCCGCTGACAATCAGACATCGTGATGACAATTGACGTCCCTAAACATCGCTGAATGTATTGTCTTGTGAGGCTACAAATCAGAATTCCCCCATTAGCATGATAGCATGTTAAGCTATCACTAAATAAATGCTCTGATGTGTTAATTTTAGACTCATGGTTGCCAAATGTCCATCAAGCACTCTAAATGTACTcgatacatttttaacaataacaaacagGTGCTTTTCATAGTCTGTGAACTGACTGTTCAGACATCACCAGTTGTCTTAGTATTCACCACTGTATTACGAAAGTCACTGTACAGTTAATGCAGTAGAATGGTAGTCGGCCTTGTACGTTTTAACATAGATATTAAACCAGGCGGATTGGCTAACCAAAGTCCCTTAATAATTACGGAGTCATGATTTTTGTTctaaaacagctgttttgtgAGAAAGGATTTGATATTTGCTCATGTCAAATTTACCGGTAAAGCAGTGAGGTGGTGTCTTTGTTCGTAATGTACTGTTCCATGAACTGACCTATCTGCCCGAGCCAAAGCAGGAAGGAGTCAGAGATTGTTAAGCACTTTTGGAATTAACTTTCTGGGCCCTTTAGAATGAAATCCTGATTGCAGTGAAAGCCGTTTGCTTTGTTTCTTCACAAAAGAggaataataaattgtaaatatgataacatatatatatataaaacggagaaaataaaatttatgtATTAAGAAGTGGCCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007275 multicellular organism development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230837 lncRNA upstream 18304 9135416 ~ 9138190 (+) True G155860
TU230853 lncRNA upstream 25419 9128700 ~ 9131075 (+) True G155868
TU230844 lncRNA upstream 55122 9016267 ~ 9101372 (+) False lzic
TU230845 lncRNA upstream 75012 9029529 ~ 9081482 (+) False lzic
TU230880 lncRNA upstream 149756 9005042 ~ 9006738 (+) True G155894
TU231009 lncRNA downstream 26280 9213155 ~ 9213707 (+) True G155984
TU231010 lncRNA downstream 27265 9214140 ~ 9214454 (+) True G155985
TU231076 lncRNA downstream 397294 9584169 ~ 9584580 (+) True G156034
TU231094 lncRNA downstream 435604 9622479 ~ 9639826 (+) True G156047
TU231142 lncRNA downstream 496871 9683746 ~ 9767105 (+) False G156081
XM_043225439.1 mRNA upstream 1482 9147923 ~ 9155012 (+) True mxra8b
XM_043224073.1 mRNA upstream 9172 9145020 ~ 9147322 (+) True aurkaip1
XM_043224221.1 mRNA upstream 127293 9026485 ~ 9029201 (+) False lzic
XM_043224615.1 mRNA upstream 232223 8919723 ~ 8924271 (+) True tardbpa
XM_043224613.1 mRNA upstream 233971 8919720 ~ 8922523 (+) False tardbpa
XM_043224462.1 mRNA downstream 2499 9189374 ~ 9193433 (+) True tnfrsf9a
XM_043223999.1 mRNA downstream 24511 9211386 ~ 9212859 (+) True uts2a
XM_043225410.1 mRNA downstream 332150 9519025 ~ 9526458 (+) True dnajc11a
XM_043224323.1 mRNA downstream 341849 9528724 ~ 9543225 (+) True asxl1
XM_043224324.1 mRNA downstream 341849 9528724 ~ 9543225 (+) False asxl1
TU230934 other upstream 34101 9120884 ~ 9122393 (+) True G155927
TU230931 other upstream 34120 9120884 ~ 9122374 (+) False G155927
TU230843 other upstream 123396 9026508 ~ 9033098 (+) True lzic
TU230751 other upstream 667853 8488086 ~ 8488641 (+) True G155799
TU230667 other upstream 823118 8331741 ~ 8333376 (+) False LOC122328506
TU231143 other downstream 537343 9724218 ~ 9769620 (+) False G156081
TU231144 other downstream 537343 9724218 ~ 9769620 (+) False G156081
TU231145 other downstream 543888 9730763 ~ 9769620 (+) True G156081
XR_006247904.1 other downstream 648221 9835096 ~ 9835170 (+) True LOC122329334
XR_006247902.1 other downstream 648520 9835395 ~ 9835479 (+) True LOC122329332

Expression Profile