RNA id: XM_043224739.1


Basic Information

Item Value
RNA id XM_043224739.1
length 5718
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC122328789
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15935353 ~ 15948063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACTTCAGAGGGTATCAAGAGGTCGCTGAGGAGTGTGGGACGGTGGCGGACTGTGTTAATGTCTGCCTACTCATTGGTAAGGTGCGTGTCCCCTGTGTCCGCTTCGGTCGCCCGTTTAGGAATGCACCTTATGGCACTGGCGCTTGTGTAAATCGCGAGGAAGGCGCGTTAGGAGCGAACTCGCTATTTTCGGCGCTTGCGCTGTCATTTTCACCCGTCGGTTGACAAACGTCGGAGCCTGCGCCGTATTTGTCGATGCATCGATAGCTAGCCAGCTAGTTAGCAGGAGAACTAGCCCGTTCGGTGGCTAGCCAGCCAGCTCGCATTCTGAGCTTTCGTTACCAAGCGCCCAATAAGTTCAGGTTCTTCAACCGGACCGCCTACTGTGCGCGTACTGGTGTATTAGCTAACTACTCGATCAGCAAAAAGGGTGACCAGAGGGGGGCAGGGAGAGAACGACGGAGGCGCGGTGAGCCAGGAGCGGCCGATGAGTTCAGACCAGGGCGGAGAGCCGCAGCTGCAGGAGGAGGCTGAGCCGGGACCCAAACCCCGTGGGGAGGACGAGATCACACCCGGGACCGGGGGAGACTCAGGAGTCATGGTCACTGCTAAAGGAGCTGGTCTGAACCCTAATGCCAAGGTGTGGCAGAAAATCCCTGCAACACAAAGTGAAGCTCCTGTGGATGGCACTGTGGCCTCCCCCTGGTCCCAGAACAATACTGCTGAAGGTAAACAATACACGCCTGGCTTTTCCACTCCTGAGAACAACAGCACAACTGGTACTGTAGTAGGCGTGGTGAACGGTATGGACCCCCCTGACCAAAGCTTCTCAGTTTCTGAGCACACTACAGCAAGTAATGTGGAGTCCAAGCTCCCCGAGGAACAGCCTGTCTCCGAAGAGACTTTGCGTGAGTCTCTCAAAAAAGAATTGGAGTTCTGTTTCTCCAGGGAGAACTTATCCAAGGATCTTTACCTAATATCTCAAATGGACAGTGACCAGTTTGTCCCTATCTGGACTATTGCCAGCATGGAAGGAATTAAAGTCCTCACAACTGACACGGAACTCATCTTGGATGTCCTCAGATCCTCTCCTATGGTCCAAGTTGATGAAAAAGGGGAAAAGGTGCGGCCAAATCACAAACGATGCATCATCATTCTGCGAGAAGTCCCTGAAACAACACCTGTTGAGGAAGTGGAAGCCTTGTTTAAGAATGACAACTGTCCTAAGGTAATAAGCGTGGAGTTTGCACACAACAACAACTGGTACATTACATTCCAATCGGATACAGATGCTCAACAGGCATACAAATATTTAAGGGAAGAAGTGAAAACATTTCAGGGAAAACCAATCATGGCCAGAATAAAAGCCATCAACACGTTCTTTGCGAAGAATGGTTACCTCAACCTGGACTGCAGTGTGTATCCTCAGCAATCTCACACTCAGTCCCAGTACAACTCCCCTCTCTTCATGCAGCCTGTTTACAGCCCCCCGCAGCAGTACCCACTCTACGGCATAGTACCTCCGACCTGGACGCCATCTCCAACTCCATACTTTGAGACTCCCCTCGCACCTTTTCCCAACAGTGGTTTTGTCAATGGATTTAGCTCACCTGGACACTACAAAACTGGGTCAACTTCTCTCAACCTTAGCCGTCCCTTTAGCAGGAACCGTGTTCCACTCTATTCAAGAAAGAATGTAATAAATGCCTTCAGGAACCATGTGAAGCCTCAGACGAGGTCTAATGATGGTCTGTCTTCCACTGTGTCTCCGGTGGCTCTTGTGGATGGTCTGTCTGGCCTGCACAGTCCCCAGCCTCCCTCCAGCGCCGGGCCAGTGCTCTCATCCACTGAGCTCAACTCATCCTTTCCGCACCTAGCTTCCAGTGATCCATCTGATGACAGTACCATGGCAGGACGTGGAAGGAGAACGACATACAGAGGCACTCGAAGGCGACGAGAGGATGATCGCAcaacaAGACCACTTCCCCTGTCTCAAGTGAAGGTACCGCCTCCCAAGTTTGACCTGGCAGCCTCCAACTTCCCTCCGCTGCCTGGCTGCTCTGCCAGTCCTCAGGGGGAGCCTGTGCTGGAGAACCGCCTCTCTGATGTCGTACGAGGCCTAAATAGGGAGAAGCAGCAGGATTCAAACAAAGAGTCCACTGCGAGTCCTGCGGGTCCAGCCTCAGAGGAGAGCGTCTCCAGGCCCACCCAGCCTGTAGCCAAGATGACTGCTCACGTCCCTGATCCTGTGACCTCCAGctCCCACCACCTGGAGAAAAAGCCAGAGAAGGTGGAGCCTCCGGTTTATAAAGAGACATCTGTGACCTCTGCCCCTGCTGCAGCCGTGCCACCCACCCCTGCCCCAACAGCACCTGGTCCAAAGCCTCAGGCCAGCTCGGCCACACCTGCAGCCACCCCCCAAACTAACACTGCCCCCTCCAGTACTCCTGCGCTGGAACCTCGCAAGCTCAGTTACGCTGAAGTATGTCAGCGACCACCTAAGGATCCCCCTCCTCCAGCATCAACTTCCAGCCCCAACAATGCAAGCGCGCAGCCTCTGAGAGAGCTGCGTGTCAACAAGGTGGAGGAGCAGCAGCCCTCCAGCCCTGCAAACAAACAGGAGCGGCCTCAGGAAACGGGGGGAAACTGCAAGGCCAGGGAGGGCCGACCGGCTCGTGACTCCCAGGGCTTTTCTCGCAGCAACGGACCCCCCAGAAACAGTGCCGGGGGGTTCAAGCTACGGGAACAGCAGAGACGCCCTCCTTTTGGCCATCGCGGTTCCCCCCAGGGAGGTTCCAGACACACTGGAAAAGAGCAGAACATCCCCCCCATGTCGCCAAAGTAAAGACTCTAAACAGAAATCCTTAATGTATGAATAtttacacacgcatatatataagatatatatgtaaatatatatatatataatgaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaagagatgaaatatgatataaaattcaaaatttaaaatggTATTCACCTCTCCTGCCTGGAGCACTTCCAGAGGAAAAGTCTCATGAAGTGACAATGCACAGACTGGGGTATCCAGGCAAAACGGGCATCAGAAATTGGAAGCAGTTGTTGCTTGCTGAAGGACGCCATCGACtaggaaagaaacaaacaaaaaaactttatgcTTCTAACTTGACAATGTCCCTTCAGAATGTAAATccatgtgagtttttttttttttttttcttgaaaggaAGGTGGCCTCTCTTAGCTTGCTGGAGGGGGAAATGGGTGGTCTGATGGCCCTAGTGGGTGTCTGCAAAGAGCATATGCACTAAGAAAAGGAACATGCATAAACGATGTCATGTACCTATACAAAGATATCACTTTGACATGCAATgattcatctttttcttttcttttgttttcggTTGCTTCGTTCGCAATCACAGGACACTGGGGGCTCGCTCGACACCCGGGGTGGTTTGACCgtgtaaatgacattttgtgtggAAGGATGCGGTTTGCTTTAGAGTCGATTCATCTGGGATTTAGATCCTGTGTAGAATACGCCATGCGTGCTTGAGTGAATAATTTTGCAAGTATCTTTAGGGCTGACAGTGCGATTTTTTTGGTCTGGAGTTTTGCATTAGTTTGCGTGACATACTGTAGCTCGTGATTAATTCTGGAACGGGCGTTCGGATTTACTTACGATCAACTTTGGAGCCTtgttaatgattaattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacctacTGTCACTTCATGAAGTCAAAGCCTGCCAATTATGATGCTGTTATGTCACTGATTTGCTGATGggtgattttgtttctttttaattttatgtgtgatttgtcattttgtttttgtagctaGTTTGAGTAACCAACAGCCTGTGAATGATAACTCTAACAGTCAGGTACATAGGCACTCATGAACTTTGTGTCATCtcagatttgtcttttttttgtttttgtgcattctTCTTCCTGGACTGCTCACATGTCTGCTCAAATATCCTGATAATCAGTCAGGCTTTTGACTATGTTTACAACAAGGTGGTGGTGGATTGGAATAATGCAAGATGGATTCAGAATAATGTTCGTTATGTGGATTGCTTCCCTATTTAGAGGGTTTCTTTTAGTCATAATCAGTACATCCAGAGTCGGTTTTATTGTATGGAGCAGTTGGTCATCATGATGATATAGGTCAAGCTGGTCTGAAGTTTAGTGTCTAtccattacatttaaatgaaagaaatatggTCACCGCTGTTATATCTAAATCAAGGCACATTAAGCTCATCTTTGTGTAGAAGAAATCCTGAATTTGCTCAGCTTTTGGTCATTTTGAAAACCAAAACCGACAGTGCTGGTCTCTttcaaagttatttttatgatgatttaTGTGCTAATCTAATGCCCAGAGTGGGTTATCTGGCTCTGGGTGACGTTTCATCTCATTCCTGTCATTTACAGCTTTTTCGGGCTGTAACTTCCAATTCGGCAAAGCTTAAAAGGCACGGTCATTTCCtgcagttttattgtttgaaGATGAAGTTGAAAGGAGAATTGAATGTTTATGCTCGGTAGCCCCTGAATGTGTCCTCCATGAATTGTAATACAAAGCCCTTATTTAAACTAATACATTTCTTCCTCCCTAAATAGAGCATTTTGACTGTTGGTTAAATGGCAATATCTGCGCAAAATCCTCTTGTTATGATTGCTGCAAAGTTTCATATAGCTTTGCCATGGTAATGAGTGTGTCGTCAGTGCTGTGCCAATGCcagcatgtgtgttttttgttgttttttttttttttttttttttttttttttttttttttttttttttggaaagggTGGCATGTGTTTGGGTAATTAGAAATTGACAGTTGCTTTGGTAGATGGTACCTGATAGTGACTGTGAGGAATATGAATAGCAGGGATGGgttcactacaaaaaaaaaggttgctgTGGTGAATTGGTGCTGTTATTTGAACGTTTAATCAGGAGGATACAGTATTGCTGTTCAATTCATTGTAAagtattgcttttaaaaaaatatatttttaatttattttaattctgctGTCCAACCCCCATGCAACCCCTGTCCCTTGTAAGTTTGTTATCATGACTGTACAAAAAGACATTGGGAGAGAATCACAGATTtaacacatttgtattttttttttttccagcagaaAAAATACTTGAGGCATTTACTAGAGGCTTAGTAATGCGGTAAATAACAAATCActggggcttttttttttttttttttttcctttgttttcatTAATGAATATGAGCAGCTAGTGGTTTAGGATAATGAAATGCACtaacttgttaaaaaaaaaaatcttactatgTAATGTGAAATTATACTAGGAGCATAAGGTAATGATATTGATGTTGACAGGCTTGCAGAAATCTACAGAAAATAGCAAATTTCTCTTTAATGTATGggttattattactgttaattGATTTAGGGGTTGGTGTGGCAAAGGGAAGAATTATATAACAATGGATTGAAGTGAGACACTAAATTCTAGCTGTCTgcataaaatgtcacaaaaagaaaataaattattttgttttggccTTA

Function

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234328 lncRNA downstream 122426 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 146022 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 218109 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 218109 15699771 ~ 15717244 (-) False LOC122329227
TU234287 lncRNA downstream 253481 15680886 ~ 15681872 (-) True G158188
TU234357 lncRNA upstream 16691 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 60044 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 153563 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 169819 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 298954 16247016 ~ 16247293 (-) True G158333
XM_043224743.1 mRNA downstream 1028 15929873 ~ 15934325 (-) False asb8
XM_043224742.1 mRNA downstream 1029 15929873 ~ 15934324 (-) True asb8
XM_043225277.1 mRNA downstream 6550 15906598 ~ 15928803 (-) False atf7a
XM_043225276.1 mRNA downstream 6550 15906598 ~ 15928803 (-) True atf7a
XM_043225275.1 mRNA downstream 14760 15906598 ~ 15920593 (-) False atf7a
XM_043225558.1 mRNA upstream 1020 15949082 ~ 15957398 (-) False pfkma
XM_043225557.1 mRNA upstream 1020 15949082 ~ 15957397 (-) True pfkma
XM_043224058.1 mRNA upstream 9834 15957896 ~ 15964419 (-) True LOC122328386
XM_043224059.1 mRNA upstream 9834 15957896 ~ 15964404 (-) False LOC122328386
XM_043224061.1 mRNA upstream 9834 15957896 ~ 15964389 (-) False LOC122328386
TU234273 other downstream 218103 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 218103 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 460976 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1345760 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1604569 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 60044 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 195771 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 292748 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 409590 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1228590 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile