RNA id: XM_043224744.1


Basic Information

Item Value
RNA id XM_043224744.1
length 2616
RNA type mRNA
GC content 0.46
exon number 13
gene id pm20d1.2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11106941 ~ 11111646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtatgcgtgtgtgtgtatataaaaattataatacaattaaatgattattttacatGTGATTCTAATCCGCAGCAGCAGGTGGCGATGCTACATTATCGCTGAggtattaaataaacatgaagtCTCTCTGGCCGTGAAATGACTGTATTTTGCACTTCCTGAAACATGACAGGCCACAGCGCTCAGTGGAGCATCTTGAAGTTCCTCAAAGCGCTGCTGATCAGTGTCTTGTTTTCGATCACGGTCCTGTTCCTCGCCGCCACCGTCAGGACGTTCACGTTTGACGCGGACGCGGGGCTTCAGCTGGGAAAATGGGAAAATACGACAGCCATTTCACTACATTTAGGTTCACAACAGAGAAAGAACCTGCTGGCAAACTTCAAAGCGGCCATTCAGATCCCCACGGTGTCATACACGGAGACAAACGTGAACACGAGCGCGCTGCTCGAGTTTGACGGGCTGCTGAGGAAGGTCTTCCCAAAGATCTTCTCATCCAGCCTGGTCCAGCATGAGACGGTGGGAAACTACAGCCACTTGTTGACGGTTCCAGGCCGTGATCCTGATCTGGAGCCCTACATGCTGCTGGCACACATGGATGTTGTGCCGGCCGATGAGGCGGATGGGTGGGATGCTCCTCCTTTCTCTGCTCGAGAGCTCAACGGCTTCATCTACGGACGAGGAACCATCGACAACAAACAGTCCGTGATGgggATCCTTCAGGCGTTGGAGTACCTGCTGGAACGAGGTTACGCTCCTCGGAGAAGCTTCTACATTGGCTTGGGTCACGATGAGGAGGTGAATGGTTTCCACGGGGCAGTCAATATCGTGAAGCTCCTGAAGAGTCGCGGGGTGAAGCTCCAGTATGTTTTAGACGAAGGCCTGGCAGTGCTGGATGGTGTCATAAGTGGCCTGGATGGACCTGCTGCCCTAATAGGCATCAGTGAGAAAGGTCAGGCCACAGTAAAGCTGAGTGTGAGCACTGCTCCTGGACATTCATCCATGCCTCCCAGAGAGAGCGGCATTGGCATCTTGGCTTCAGCAGTCAAAAGACTGGAGGAAAACCCGATGCCCAGGCTGTTTGGTTACGGTCCCGAGCGTGGCACGTTTGAACACCTGGCTCATAAGtttGGTTTGCCTCTAAAATTCATCATGTCTAATCTGTGGCTCTTCTCTCCGCTACTCAGCAGGGTGTTGGAGAGAAAACCTGACACAAATGCTTTTGTGAGGACCACAACTGCTGTCACGATGTTTAACTCGGGTGTTAAGATTAACGTAATCCCCTCATATGCTGAAGCTTTTGTCAACTTCCGTATCCACTCAGCCCAAACGCTGCAGGAGgTTCTGGAGTTGGTCGAATCAACTATATCAGATGAGCGTGTGAAGGTAGAGCTGGTCAATGGGTTCGACCCGCTGCCCGTCAGCTCCTATGATGAGCAGGCGTTCGGCTTCCAGATCATAAAGAAAACAGTGCAGAGCATGTTTCCTCAGCTCACGGTGGCTCCAGGTATCTGTGTTGGCAACACCGACAGCCGCCACTACAAGGACATCACACGAGATATATATCGCTTCGCTCCGTCGTGGTTCAAACCGGGTGATCCTCAGAGATTTCACGGCGTGAACGAGAGAATCTCCATTAAGAACTATGAAGAGATTGTAGTCTTCTACTTCCAGCTCATCCAGAATAATGACATCAGGAGGTTGCCTCCACCTCACGGTAGCCAGCATGAGCTGTAAACGAGCTGGGTTGTTACTAACACGGACCTCACTGAACTAGCACTGATCTCAAGACGCTTGATGATTTAGAAACGAAGCTCGGGGAGCTTTGTTTTAGCAGATTAATTAgcaaagaattaaaaatgtaaataaaaggaaTGCAGCTTTAGAACAACCGCAATGAACAGCTGAGGGCTGTGAAGCACTTCAGttataaaggtttttttcttgcatttcaTGCAGAGCACAGCTGAAACATAATCTTAATCTGTTGGTTGTCAGGTGTTGACGGCAATACATGggcatccattcatccatttgGCAGATATTTTTTCCAAAGTGAGACAGTGTGTATACAGCCATATTGTCAATCACGTATTACCAGACCCTGAAGGATTGCTGAACAACACTACACTTCAAATTTAAATTCTTCACAATCTgtacatgaacaaaaaatagcTAGCTATCTGAGTAAATCAGACAAAAAGAGAATTATGAGTTTTCAGGATAAATAGGATTTTCAATAATGCTGAGTGAAAGTGTGTGCAAAGGGCACGATTAATCTAGTAAACTGCGGTTTAGTCTGCTAGTGTTTTCAttgattcagattttattaaggTTTAAGTTAGCGCTTTTTCAGAGTTTGCAATGTAGGCCAATAGAGTAGTGATTTATTATGACTGATTATGTCTTTCTCTGTAAACATTTACCTCTGCATAGCTCAACTCAAAGCTATAGTTATTGGGGTTTTTTATGTTACTTTGGATCCCTTGGTAATTTTGCACTGAAATGGGCTCGGACCgaaaattattgtaaatgatGTGTATGTAATGATGTGTGTGTAAAGAATGTTAcatgaatttttctttttgggtttaaatgaataaattttttaaatagaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K13049 PM20D1; carboxypeptidase PM20D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232093 lncRNA downstream 30980 11071410 ~ 11075961 (-) True G156726
TU232094 lncRNA downstream 30980 11071410 ~ 11075961 (-) False G156726
TU232095 lncRNA downstream 30980 11071410 ~ 11075961 (-) False G156726
TU232097 lncRNA downstream 30980 11071410 ~ 11075961 (-) False G156726
TU232098 lncRNA downstream 30980 11071410 ~ 11075961 (-) False G156726
TU232146 lncRNA upstream 51018 11162664 ~ 11163019 (-) True G156759
TU232149 lncRNA upstream 130954 11242600 ~ 11244820 (-) True G156762
TU232181 lncRNA upstream 241513 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 264531 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 427977 11539623 ~ 11540045 (-) True G156812
XM_043224233.1 mRNA downstream 38332 11062357 ~ 11068609 (-) True tfip11
XM_043224127.1 mRNA downstream 119529 10985385 ~ 10987412 (-) True bhlhe23
XM_043224409.1 mRNA downstream 172034 10923126 ~ 10934907 (-) True dnajc5ab
XM_043224410.1 mRNA downstream 172036 10923126 ~ 10934905 (-) False dnajc5ab
XM_043224393.1 mRNA downstream 183861 10915631 ~ 10923080 (-) False trim101
XM_043224745.1 mRNA upstream 1363 11113009 ~ 11117428 (-) True pm20d1.1
XM_043224752.1 mRNA upstream 6036 11117682 ~ 11131520 (-) False lemd1
XM_043224751.1 mRNA upstream 6036 11117682 ~ 11131510 (-) False lemd1
XM_043224750.1 mRNA upstream 6036 11117682 ~ 11131510 (-) False lemd1
XM_043224746.1 mRNA upstream 6036 11117682 ~ 11131510 (-) False lemd1
TU232124 other downstream 1718 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 428892 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 739572 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 867668 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 875022 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 406364 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 629754 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 629754 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 631024 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 632473 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile