RNA id: XM_043224745.1


Basic Information

Item Value
RNA id XM_043224745.1
length 1957
RNA type mRNA
GC content 0.45
exon number 13
gene id pm20d1.1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11113009 ~ 11117428 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGATCACTGTCACTCCTCCTGAACTTCTAAAAGATGAAGACCAAATTCACCAAGAAGACTGTCTTGAAGTTTTTAGGAATACTGCTGCTAATCCTTCtactttcagttttaattttatttgctgttGTGATCGGTAGGacgtttacatttaaagtaaacacAGAACTTGGAGAATGGGAAAATGCGACAACAATTCATCCCAGTTTAAGTCCAGAACAGAAAAAGCAGCTGCTGGAAAACTTTAAAGTGGCAGTTCAGATTCCCACAGTGTCGTTTTCAGAGTCGGAACAGAACACAAGTGCCCTGCAAGAGTTTAACCTGCTACTGAGGAGGGTCTTCCCAAAGATCTTCTCATCCAGCCTGGTCCAGCATGAGACGGTGGGAAACTACAGCCACCTGTTGACGGTTCCAGGCCGTGATCCTGATCTGGAGCCCTACATGCTGCTGGCACACATGGATGTAGTGCCGGCCGATGAGGCGGATGGGTGGGATGCTCCTCCTTTCTCTGCTCGAGAGCTCAACGGCTTCATCTACGGACGAGGAACCATCGACAACAAACAGTCCGTGATGgggATCCTTCAGGCGTTGGAGTACCTGCTGGAACGAGGTTACGCTCCTCGGAGAAGCTTCTACATTGGCTTGGGTCACGATGAGGAGATCAGTGGCCCACAAGGTGCTGTAAATATCGTGAAGCTCCTGAAGAGTCGCGGGGTGAAGCTTCTGTATGTTTTAGACGAAGGTCTCACGATCATGGATGGTGTGGTAGATGGCCTGATCGGACCTGGGGCCCTcaTTGGTGTAAGTGAGAAAGGTCAGGCCACAGTAAAGCTGAGTGTGAGCACTTCTCCTGGACATTCATCCATGCCTCCCAGAGAGAGCGGCATTGGCATCTTGGCTTCAGCAGTTGCAAGGCTGGAGAAGAACCGAATGCCCAATCTTTTTGGTCATGGTCCAGAGCGTGCCACATTTGAGCATCTGGCACATAagTTTGGCTGGCCGTACAGAATGGTCATGTCTAACCTGTGGCTCTTCTCTTCACTGCTCAGCGGTGTTTTGGAAGGACAGCCTGACACAAATGCATTTGTGAGGACAACAACTGCCGTCACAATGTTTAACTCTGGTGTTAAGATTAACGTAATGCCAGCGTATGCCGAGGCCTTTGTCAATTTCCGCATTCACTCTTCCCAGACACTGCAAGAGGTTTTAAAGCTGGTTGAATCCACCATATCTGATAAGCGTGTGAGGGTAGAGTTTGTCAGTGGATTCGACCCGCTGCCCATCAGCTCGTATGAAGAGGATACATTCGGGTACCAGATCATAAAGAAAACAGTGCATGACATTTTTCCCGAGGTCACTGTATGTCCTGGTGTCTGCGTGGGCAACACTGACAGCCGTCACTACACAGAACTGTCTCCGGACATTTATCGCTTTGCCCCATCATGGTACAAACCTGGCGATTCTGCGAGATTCCACGGTGTGAACGAGAGAATCTCCATCCAGAACTATGAGGAGATTGTGCTGTTCTACTTTCAACTCATGCAGAACAGTGACATCAGGAGGTTGCCAGTTCCTCGCTCCTGAAATAGAACTCTATGGAAGTCCTAAGCTGTGTTCTAATGAGATCAAATTAACTTTAATTCAAAGTTTAGGggaagtttgttttatttgtttatttattttttaaagaatgtaatcattttattcagatggatgcattaaatggatcaaaagtgacagcaaacacAGCTATAATGATACAGTAGTCttgtatttcaaattaattttaacctttttattaaacaatctTAAGTGTTCTTAAATGTTAGCGCTCTTAAATCttaaatgcttcttgagcagcaggttatttaaatgatttccgaaggatcacgtgacacagacgaatataaataaatttaaattgtactaATGTTCaactatattactgttttaatgta

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K13049 PM20D1; carboxypeptidase PM20D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232097 lncRNA downstream 37048 11071410 ~ 11075961 (-) False G156726
TU232146 lncRNA upstream 45236 11162664 ~ 11163019 (-) True G156759
TU232149 lncRNA upstream 125172 11242600 ~ 11244820 (-) True G156762
TU232181 lncRNA upstream 235731 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 258749 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 422195 11539623 ~ 11540045 (-) True G156812
XM_043224744.1 mRNA downstream 1363 11106941 ~ 11111646 (-) True pm20d1.2
XM_043224233.1 mRNA downstream 44400 11062357 ~ 11068609 (-) True tfip11
XM_043224127.1 mRNA downstream 125597 10985385 ~ 10987412 (-) True bhlhe23
XM_043224409.1 mRNA downstream 178102 10923126 ~ 10934907 (-) True dnajc5ab
XM_043224410.1 mRNA downstream 178104 10923126 ~ 10934905 (-) False dnajc5ab
XM_043224752.1 mRNA upstream 254 11117682 ~ 11131520 (-) False lemd1
XM_043224751.1 mRNA upstream 254 11117682 ~ 11131510 (-) False lemd1
XM_043224750.1 mRNA upstream 254 11117682 ~ 11131510 (-) False lemd1
XM_043224746.1 mRNA upstream 254 11117682 ~ 11131510 (-) False lemd1
XM_043224747.1 mRNA upstream 254 11117682 ~ 11131510 (-) True lemd1
TU232124 other downstream 7786 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 434960 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 745640 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 873736 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 881090 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 400582 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 623972 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 623972 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 625242 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 626691 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile