RNA id: XM_043224754.1


Basic Information

Item Value
RNA id XM_043224754.1
length 1988
RNA type mRNA
GC content 0.46
exon number 12
gene id lemd1
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11117682 ~ 11131520 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAGTTCTGAAGATGTACTACTGAATTCTTATGTAAtctcattttttttgtcctctttcCTTTCAGTTTCTTGACAGGGGTCTGCCAGGTTCCCGTGAAAAGCGGCACTGAGAGGAGAAGAGTTGTGAAGATGTACTACTGAATTCTttgtggttttcattttttcgGCCGCTTTTCCACCAGTTTCTCAGTGAAGATATGCCGGATTTCTGTAAAAAGAGACATTTTCCGAGATTCTAGTTTGAAGAAcgaaagaaaagacaaaatgaaTTCACCTCAGGGAGGAAGAGCACCTTCACCGAGACCCTCACTGCTCTGTGTTCCTCTACCCACCTAAAGGGGCACCAGAAAAGAAAAGACCATGAAAGGAAACATCAAATTTGAAACACTGCGACCAAACCAATTCGATTTTTCAGGCTCTCTTGGTCTCATTTTTCGAACTTCTTTAAGCAGTCGGTTGCCCGTTCCCTCATTCTGttccCATGTCGCTGAAAAAATGGCGGGAAATCATTCAACCTGTGACGTTGAAAGCAATCGTCAGAGGACCTGGCGTGAGCGCGCGCAGTGAAATACCGTCCAGGCCGAGAAGGAAGAGGCAGCAGAAATGGTAGACCTGGGCTTACTGACTGATGATCAGCTAAAAGCCAAACTGCTCCAGTATGGTGTCAAAGCTGGACCCATTGTAGCTTCCACTAGAGCTTTATATGAAAAGAAGCTGAAAAGGCTGCTGGATTCTTCAGCACAGGCATCGCAACACCGGGTCAATGGCACAAGGGATGCAGGCCTCTACTCGGACAGCGAGGAAGAGGATGGGAGGGAGGAAGACGAGGACAAGGACTCAGAGTCGGAGCAGCTTCAAACGGTGGCCCAGACGGAGACCGGCAAAACAGCAAGCAGAATGGGGACATTCAGTCTGAGCAGACATTTTTACCCACGCTGCTTTGTGCCCTCAGCCGgattcataaatGGAATTCAGCACAAGTCTTCAGACGCCACCCAGAATGGGTCTTTGAGTCAAAGCGGGTCCCCATGCAGATCCTTCAGTATCACTCAGATGGTGGAAGAGATTGAGAACAGATTTAGTCCTCAGTCAAAACAAACTGAGATTGAGAGGCGATCTGGTCAGAGAAGCGAGCAGACGGTGGACAGAAGGGCCCTGCAGGACTTCATGAGGCTGAATAAAGACACCATGACTGGCAGATCTCTTTGTTTAACATCTCCATCATCCCATCAGAAACAAACTGTCACAGAACCTGTGACGGATGTTCTTTCAGAGATGTTTCCTGACACTGCTAAAACCCCCACTGGAATCTACGCTACAAAGAGACGGCCTATAAAGGGAGCTGCGGGCCGCCCGGTGCAGTTTAAATACCCTGAAATGCCGCTACTGAGTCCCACTACACTGGAGAGGCAGGAGATTCAGCAGCGTCTGGTGCCTCTGTGGGTTCAGGTGGTGGTCTTCCTCCTGGTGATCTGCCTGCTGTACTTCATCTACTCATCCATGGAGGAGCCGCTCTCCAATCCCTTCACTGATCTGCTTGAAGGTCTGCATGAAGCTGCTCTCATGTACACCTCAGAGAACTAATCCACCACCGATGCAGCAGCTTAGGTGTGCAACACGGATGCCAAAGAAGGTTGATTCCTATTTACCTCAGGCTCTTGTCAGTCAAGTGTCCTTCAAACGATTATCTTTTTAAACTGATGAGAGCTGCATCAGAACACCTGCGTTTACCTGCTTTCAAAGACCCCATATAGGATGCTAAATTGAGATTTGTAGTTGGCTAAATCCTATGCGTGGTGCGTTTTCTCTGATTTGATCTTTTACGATAGAAGTGTATTTTATACGGTTTTTGAACTCGTACAGAAACGATCACCTTCTTTGCTTACAGTCTTACACAGCTGAACTAACGAGTCGTATAtcttgtgggttttttttaatgtatacctttcgttgttttatttaaaataaatacatttgttttgctaA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232097 lncRNA downstream 41721 11071410 ~ 11075961 (-) False G156726
TU232146 lncRNA upstream 31157 11162664 ~ 11163019 (-) True G156759
TU232149 lncRNA upstream 111093 11242600 ~ 11244820 (-) True G156762
TU232181 lncRNA upstream 221652 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 244670 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 408116 11539623 ~ 11540045 (-) True G156812
XM_043224745.1 mRNA downstream 254 11113009 ~ 11117428 (-) True pm20d1.1
XM_043224744.1 mRNA downstream 6036 11106941 ~ 11111646 (-) True pm20d1.2
XM_043224233.1 mRNA downstream 49073 11062357 ~ 11068609 (-) True tfip11
XM_043224127.1 mRNA downstream 130270 10985385 ~ 10987412 (-) True bhlhe23
XM_043224410.1 mRNA downstream 182777 10923126 ~ 10934905 (-) False dnajc5ab
XM_043225118.1 mRNA upstream 17361 11148868 ~ 11154450 (-) True nucks1b
XM_043224147.1 mRNA upstream 44440 11175947 ~ 11213276 (-) True tafa1a
XM_043224148.1 mRNA upstream 44440 11175947 ~ 11210812 (-) False tafa1a
XM_043224149.1 mRNA upstream 44440 11175947 ~ 11210808 (-) False tafa1a
XM_043224146.1 mRNA upstream 44440 11175947 ~ 11210806 (-) False tafa1a
TU232124 other downstream 12459 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 439633 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 750313 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 878409 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 885763 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 386503 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 609893 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 609893 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 611163 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 612612 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile