RNA id: XM_043224777.1


Basic Information

Item Value
RNA id XM_043224777.1
length 5173
RNA type mRNA
GC content 0.45
exon number 24
gene id dnmt3bb.2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10709346 ~ 10727569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAACGCGGGTCGTAAAGAGTTGGTTGGACGGAGCGAGCGAACACGCCCCCTCCAGTAAACGAGTCATTGCTTTGAATCTGAATGAAACCCAACAAAGATCTCCTGACCGACGACACGAGAGAGAGGCGCGTCGTTCATCGCGTGCTTTAATAAGTATCGTTCACAGCAACGCAACGGAAGCGGAACAACTGAGGTGTTGGGAAAACGCACGCGATACTCACTCTTAGACACGCAACTATACCGGAAAACCGCATCTGTAGCGAAtgactcgttttttttttagcgattCGGTTGAGTAAATTAAAGACTCACTCACGGCACGCGCTGATCGCCATCTACTGGAGCAACCGCGCAATCTGCATAAACCCGCGAACAGGTCGTTGTGTGATTCAAAAGATTCGAGTCACTGAGATGAATCCAAGTTCCCACCGGTGACCTGCAGTGTTTCCACGTTGCGGAACGCGTGCGGCGGAACCCTCTCGCGTTCAAACGCGACCGATTCACCGAATTCGCGGCATCGCCAGAAGGAGGCCCGACTACCGCGCGCCGAACGGGACGGGGTGGTGGTTATGGAAAAATGATGGTGAGCAGGATGATTGGAGATGAGAAACGTGATCTCAGTGAGCTGCTGGACTGGCTCAATGGCATACTGCAAACCACCTTCAGCCAAGTGGAGCACACCTGTTCAGGTGCCGCTTTTTGTCAGATAATGGACATCATTCACCCTGGATCTGTCGACATAAATAAAGTGAAGGTCGCAGCCAAAGAGGATGTAGACATCTTGGATAATTACAATCTGCTACAGGACGCTTTCAACAAGGCAGAAATCAAGAAAgaacTGGAGCTGAAATTGTTGGTGAATGGAGACAGCCTGAAAACATTAGATTTGCTTTCGTGGTTCAAAGATTTTTATGATCACAGTGTTGCAAAGCAGAAGTGTAACACACAGGAGGTGCCATTGAAATCAAGCGGACAGTTTGAAATCTCTAAAAAGGAAAAGCAATCTTCAAGACACTACAGTCCTGTACAGACAAAGTATCTAAACCAGAAAATGCTGCATTTTAAGAAGGGATCGCATGAATCTGTCTTCCAGAATCCAGCCACAATGTCTTTCATCAGAAAGTATGGCTCATCTACCTCACCTGATGCCGGATCAAACTTTGTCAGTGGCAAGGGTGGTCTAGTATTAGGCCAGAAATGCCTAGAAAACATTACATCATTGTTCATTCAGACTCCATACTGCCTTTATGTATTCCATGGAGTTGAGCTTGAGGACGAGAACAAAGCCAGCGTGTTGCTGTTGGGCTTTTTTGACAAAGTTGCTGGAGAAACCAAAATCAGATTGCTTGATGTTCTTCATCCACAGGAAGAGACTGCCGATGCCTTCTGTACCTGCATTGTGGACGTGCTGAAGAAGTTCAGAATACCTCTAATGAACAtggcaatattttattcaaatttccCAGATCACGAAGATCTTCTCTCAGATCTGAAGTTGCTGAAACCTGAGATTGTGTCTCTATGTGGACTTACAGATATGGCAGGACGAGTCTGTCACAATGGTGTTAAGAAAATGGAGATTTCTGGCCCGATTGTGAAACTCATCACCGAGATCTACAAGCACTTTCCATCTTTCCCAGCTTCTCTACAAACTTTGCTTGACGTCGATTGTTTGAACTTCAATAATATCCTGACATCCCAATGCTCTCTCTTCTGGAGAATCATCCAGAAAATGACTTTAGCTTGGTCGGACCTTGAGAAATACTTTGGATCTCTGGATGCAGATGAAGCAGCGATCTGTTGTCTTCTTAGTGATCCCAAAATAAGACTCAGCATCCTATTTCTTAGCCATGCTTTGAAACCGCTTTGTGACTTTCAGGAGAATGTTGACCGAGGTGTCGGCGTGACGCAGCTCCTCCAAGATGCTTCTCAATTAGTGAGATTCTACACAGCGAGTTTCCTCAGACCAAAAGCAGCTGAGTTTTTTCTCAGAAGAGGAAAGATCTCGCTTATACAGGAAACCGTGGGACATTTGCCTAGAGGAGAGGTTGACGTTGGCAAACAGGCTGCTGATTTTCTCCTGCAATCCTCTGAAGAGTTGACTGACTATTTGGAGACTTTCCACAGTTCTGTCATCTCTTTCTACACGACTGTGACTGTTGATATTGTTCAGCATTTGCCCTTCTCAGATTCCACCATGAGAAACTTGCCATTAGTGCTGTGTCCAGGAAAAAAGCTTGAAGTGACTGGCAAAACAGTCCAAGATTTAGGTGTCTGTTTTGGGGTTTGCTCAAGCCCCGGGAATGTCAGCTTACTCACAGATGAGTTTTTGGAGTATCAGTTCATTGATGGAGGTGACACACACCCAGCCGACCAGTCAGTGGAGGAGTACTGGAAGACTGAGCTGAGAATTATGGGAAGGACTTCAAGTTTTGGGAAATTAATCGTTAGCTTGTTGGCATTGCCCAAAACCTTGAAAAAAGAGATGATTTTTGAACAGGTGTTTCAACAAACTGACTATCTCAAGGAGATGAAAGTGGAGGACTTTGAGGAGAAGGACATGGCTGAGGATGATGTGACAGACAGCAGCTCATATAAAAGTGCTCCGTCACATCTCAGCCCAGAGACTCAAGGAAGCATCACATCTGATATCATTGACTTAACGGAAATGGAGGATATGGCACCAATAGACGTGGAGGACATCGCACCAATGGAAGTGGATGATATTGTGGCAatctcttctgattcagacaCAGAAAGGGAAAATAACACAGAAGAGGATCATCCGCATGTGTCTGTAATCTTGGAGGATGATAATGAAatcactgatgatgatgatgactaCAACTGTGATGCTGCTGATGGCACATGGAATAACGTGgatGGTTTCACAGTGGGTGAGATGGTTTGGGGGCCCATTGAGGGTTTTGGTCTTTGGCCTGGACTGGTTCAGAGCTGGGACAGCAAGAAGCCTTGTGGTTCCATGCGTAAAGTGATTTTCTTTGGGAATAGGATGCTGTCAGAGGTCCAAGCAGATGACCTCCTACCCTTCTTTTCATTTGCCAAGTGCTTCTGTTCAAATTCCTTCGCTACAGTAATGGCGTATAAAGACGCAATTTTCAGTTCTCTGCAGGTGGCTTCCAGACGCagtagaatgtttttttctcctgagAAAGACTCTAAAGATGAACTTCTTAGAGTCATGTTGGACTGGGCTTTTGGGGGCTTTGAACCATTGGGGCCAGATGGACTTCAATCAGGATGCAATGaCAAGATTCATATGCCTCGATCAATGAATAGCACCATTGGAAAAGACAAAGACCCCACAGGAAAGTTATTTACATTAACTGTGCCTCTGAGAAAACTCCCTGAACCCCTGGATCTGCACAATGGCTCAGTAGACCTTGGGACAACAGATGTTTATAGAAAACGCATGCATTCAAAATGGAATCAGACATCTTGGCAGAATGTGAAGACCcgtagaaaacaaaaatacacaccaCGGAATAAGCCTCAAAATATTACCCCAAGTGTACATATCGAGTCCAGACAAAACAGCCAAAAAAGaaaTCAAATGGTGCATGAATTTTTGGAAAACAAGAGAAACATTGAAGAGTTTTGTTTATCATGTGGGAGTACGCCTGTTGAAATCATCCACCCACTCTTCGAAGGAAGGCTGTGTTCCAACTGCAAGTTTAACTTCACGGAGACGCTGTACAGATATGATGAAGATGGCTATCAGTCTTACTGCACCGTCTGCTGTTCTGGCCTGGAGGTCATTCTGTGCGGCCATAACAGCTGTTGTCGCTCCTACTGTGTGGACTGTCTGGATATCCTAGTGGGTGAAGGGACATTTAACCGGCTGAAAAACGTGGACCCGTGGACGTGTTACCTGTGTGCACCTGAGAGCAGCTCAAGAGCTTTGAAGCCCAGGCGTGACTGGAGCATCCGAGTGCAGGAGTTCTTTGCCAACAACAGTGCCATGGAGTTTGAGCCCCATCGAGTTTACCCATCAATCCCTGCTAACCAGCGACGTCCAATCAGAGTGCTCTCTTTATTTGACGGTATAGCCACAGGATACCTTGTTCTAAGGGATCTTGGTTTCAAAGTTGAAAAATATGTGGCCTCGGAAGTTGATGAAGAGTCCGTTACCATTTCTATGGTCAACCATGAGGGGAAAATCACTTATGTGGATGATGTAAAGAACATTACGAGGAAGCATATTGACACATGGGGCCCGTTTGATCTTCTCATTGGAGGAAGTCCTTGTAATGACTTATCCATAGTAAATCCTGCCCGGAAAGGCTTGTATGAGGGAACAGGGCGGCTCTTTTTCGAATATTACAGGCTTCTGAATGCTATGAAACCTAAGGAAGATGACCCACAGCCGTTCTTCTGGCTGTTTGAGAACGTGGTGTTCATGCAAACCCACGTTAAAGCTGACATTTGCCGCTTTCTGGAAtgtaaCCCTGTGCTTGTTGATGCTGTGAAAGTGAGTCCAGCTAACAGAGCAAGATACTTCTGGGGGAACATACCTGGCATGAACAGACCAATCGTAGCGTCTCAGAATGATAAACTGAGTCTTCAGGAATGTCTGGACCCTGGCCGCACTGCAAAGTATGAAAAAGTTCGCACTATCACCACGCGGCCAAACGTACTAAAACCGGGCAATGAGGACCGTCATTACCCCATCATTATGAACGGGGAAGCTGATAGTCTGTGGATCACTGAAGTGGAGAAAATATTTGGATTTCCGAAACATTACACAGATGTGAAAAATTTGGGGCGTATGCAGAGGCAAAGAGTATTGGGGAAGTCCTGGAGCGTTCCTGTCATCAGACACCTTCTAGCACCTCTGAAGGATTACTTTGCTTGTGACTAGGTCCTCTTGAAATTAACTGAactttattgtgcattttgtaACTTTTTCTTTGAGTAAAAGGACTCAGGGACACGACGGCTTGTcagttttcatttgtaaatgtgaaGTGCCAAGATAAATAATCCTCTTTagctttgttttgatttaagaatgttaAACAGTGACTGAAGAATTTTcattaattcagttgttttagttatttttttggatttaaGTTTGCTGGATAGtttaatgcttatttaaaataagtgaagTGTATCAAATTTCagagaagagaataaaaatgac

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0051570 regulation of histone H3-K9 methylation biological_process
GO:0032776 DNA methylation on cytosine biological_process
GO:0060037 pharyngeal system development biological_process
GO:0010842 retina layer formation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231724 lncRNA downstream 6525 10702596 ~ 10702821 (-) True G156471
TU231719 lncRNA downstream 9122 10698597 ~ 10700224 (-) True G156469
TU231718 lncRNA downstream 12669 10696452 ~ 10696677 (-) True G156468
TU231700 lncRNA downstream 33767 10667957 ~ 10675579 (-) False G156459
TU231736 lncRNA upstream 448 10727964 ~ 10728248 (-) True G156478
XR_006247879.1 lncRNA upstream 153075 10880591 ~ 10882652 (-) True LOC122329022
TU231828 lncRNA upstream 232119 10959635 ~ 10959846 (-) True G156538
TU232081 lncRNA upstream 306226 11033742 ~ 11035495 (-) True G156715
TU232086 lncRNA upstream 319629 11047145 ~ 11053295 (-) True G156719
XM_043225474.1 mRNA downstream 177 10705983 ~ 10709169 (-) True cdc42l2
XM_043224762.1 mRNA downstream 14396 10689664 ~ 10694950 (-) True LOC122328796
XM_043224763.1 mRNA downstream 22631 10679005 ~ 10686715 (-) True LOC122328797
XM_043224764.1 mRNA downstream 31196 10675680 ~ 10678150 (-) True LOC122328798
XM_043224691.1 mRNA downstream 35249 10662263 ~ 10674097 (-) True LOC122328766
XM_043224780.1 mRNA upstream 2545 10730061 ~ 10765008 (-) False dnmt3bb.1
XM_043224779.1 mRNA upstream 2545 10730061 ~ 10765008 (-) True dnmt3bb.1
XM_043225174.1 mRNA upstream 172310 10899826 ~ 10901786 (-) True ppdpfb
XM_043224396.1 mRNA upstream 176364 10903880 ~ 10914203 (-) False tpd52l2b
XM_043224394.1 mRNA upstream 176364 10903880 ~ 10914197 (-) True tpd52l2b
TU231697 other downstream 31297 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 341977 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 470073 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 477427 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 875664 9832128 ~ 9833682 (-) False zgc:153284
TU232124 other upstream 373228 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 790494 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 1013884 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 1013884 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 1015154 11742670 ~ 11742803 (-) True LOC122329333

Expression Profile