RNA id: XM_043224781.1


Basic Information

Item Value
RNA id XM_043224781.1
length 1867
RNA type mRNA
GC content 0.48
exon number 7
gene id krt18a.1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6454153 ~ 6457919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCGCACTCTAGACATGGAGgaatgtgattggctgaaggGAGGGGCTTTTGGAGGCGGGACTTGTAGGAGCAGTTTGTTCATAAAGCCTGAGAGTGTCCCTCATGCCCTGTGCACTCTTCTGACTGTGTTACTGAGCTCTACCTCTCTCCAGTCCTTCATCTGTTCATTCACTTCAGCGACCATGAGTTTGAGAACAAGCTACAGTGTGCGATCCTCCACCTCCCAGGTGCCGGTGTCCCAGATGTCCCAGATGTCCATCAAGCGTACCACCAACGTGCCGACTTACCGGGCTGCGAGCATCTACGCTGGCGCCGGAGGTCAAGGAACCCGAATCTCCACTGCCTCCTACTCAGGTGTCCGCAGTGGAATTGGACTCCCCTCAATGTCCAGCTCCATCCAAGTGAGTGCCACTGGAGCCACAGGTGAGATCATGGGCAACGAGAAGATGGCCATGCAGAACTTGAATGACCGTCTGGCCTCCTACCTGGACAAAGTGAGGACCCTGGAGCAGGCCAACAGCAAGCTGGAGCTGAAGATCCGCGAGGCCCTGGAGAAGAGAGGTCCTGATGTGCACGACTACAGCCGCTTCCAGCCCATCATTGATGATCTGCGCAAGAAGATCTTTGATGCCACCACAAATAATGCCCGTCTAGTGCTTCAGATTGATAACGCCCGTCTGGCAGCTGATGACTTCAGAGTCAAGTATGAATCTGAGCTGTCCATCCGCCAAGGCGTGGAGGCTGACATTGCCGGCCTGAGAAAGGTCATTGATGACACCAACCTGAACCGCATGAATCTTGAAAGCGAGATTGAGGCCCTCAAGGAAGAGCTCATCTTCCTTAAGAAGAACCATGACAATGAGGTAATGGAGCTTCGTAACCAGATCTCCCAGTCAGGAGTGCAGGTGGATGTTGATGCTCCTAAAGGACAGGATCTGGCCCAGATCATGGAGGAGATTAGAGCTAAGTACGAGAAAATGGCCCTGAAGAACCAGGAGGAGCTGAAGGCCTGGCATGAATCTCAGATCTCAGAGATTCAGGTACAAgtcacacagaacacagagGCCCTCCAGGGTGCACGTACAGAAGTCAACGATCTTCGCAGACAAATTCAGACACTAGAGATTGAGCTGGAGTCACAGAAAAACCTGaaaGGATCACTGGAGGCCACTCTGCGGGACACAGAAATGAGATACAACATGGAGATCGAGAGTCTTAATGCCATTCTCCTGCAACTGGAGGCTGAGCTCACACAACTTCGTAACAGCATCCAGCAACAGACACAGGAGTACGAGGCTCTGCTGAACATCAAGATGAAGCTGGAGGCAGAAATTGCCACCTACAGGAGACTTCTGGATGGCGGAGACTtcaaGCTCCAGGATGCTCTTGAAGAGCAAAAGAAGGTGAAAGTGATGACTGTCACGCAAACGCTGGTGGACGGGAAGGTGGTGTCTTCAAGCACAGAAACCAAGGAGAGGAAACTTTGAACATCATATTTGAGATCAACCTCCACAACACATCAGAAAAACCTCATGGGCCAATGATAAAATGATCTAAAGACATGCTGGACTTAACACTTTCGATATTTATTTAGTCCAAAGTGCCTTATTGTAAGTGTCTCAGAGCATATATGCAATGAGTTTTAACTAGCACATTTCAACACTAACTTAAAAATTGTAacaaaattttaacattttaatgactaCAACCAAAAAATCTAAAGGTCAAAACACTATTGAagctttatatttaatacattttgtaatgacAATGATTGTTTATGATCATCAGTTGtcccattttgtttttatgttgtgttgttGTGATCATGTCTTTTCCTTTCAAATAAAAGACACCTTTATCAAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230114 lncRNA downstream 102328 6349007 ~ 6351825 (-) True G155388
TU230003 lncRNA downstream 262833 6191097 ~ 6191320 (-) True G155308
TU229923 lncRNA downstream 534990 5815311 ~ 5919163 (-) True G155254
XR_006247895.1 lncRNA downstream 791197 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 906445 5525041 ~ 5547708 (-) True G155238
TU230159 lncRNA upstream 26735 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 27520 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 30705 6488624 ~ 6499749 (-) False G155391
TU230127 lncRNA upstream 51796 6509715 ~ 6514093 (-) True G155392
TU230195 lncRNA upstream 154074 6611993 ~ 6612524 (-) True G155435
XM_043224782.1 mRNA downstream 814 6450959 ~ 6453339 (-) True krt18a.2
XM_043225115.1 mRNA downstream 19178 6422212 ~ 6434975 (-) False eif4ba
XM_043225114.1 mRNA downstream 19178 6422212 ~ 6434975 (-) False eif4ba
XM_043225113.1 mRNA downstream 19178 6422212 ~ 6434975 (-) True eif4ba
XM_043224350.1 mRNA downstream 39719 6370216 ~ 6414434 (-) False tns2a
XM_043225070.1 mRNA upstream 57892 6515811 ~ 6521844 (-) True zgc:171775
XM_043224003.1 mRNA upstream 140799 6598718 ~ 6602083 (-) True slc16a7
XM_043224004.1 mRNA upstream 140799 6598718 ~ 6602072 (-) False slc16a7
XM_043224005.1 mRNA upstream 140799 6598718 ~ 6602063 (-) False slc16a7
XM_043224770.1 mRNA upstream 250793 6708712 ~ 6713207 (-) True adrm1
TU229892 other downstream 974334 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 999106 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1619633 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 2259155 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 272932 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 308689 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 315659 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 315659 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 315659 6773578 ~ 6822978 (-) False rps21

Expression Profile