RNA id: XM_043224782.1


Basic Information

Item Value
RNA id XM_043224782.1
length 1390
RNA type mRNA
GC content 0.41
exon number 7
gene id krt18a.2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6450959 ~ 6453339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTCATACCTTTCAGAACCAGCAGTTGTATCTGATCTCATTTTCGTCGAAGAGCTCTTTACTGCAGAAAATCGAGCAAAATGCAAAACTTCAGCGTACAGAACAAAAGAATATATAGAATGTCCTCAGAGGACCTCAGCATGCTAAGACCTACATTTTACTCTTTGAGAAGTGCTGGGAATAGGGGATCCTATTCGAAGGACATCTTTGGATCTACCACTGTACAAACGGGGATTGTTGGAAATGTTGGAAATGAAAAGGTTACCATGCAAATCCTGAATGAACGTCTTGCTTCCTACCTGGAGGAAGTTAGGAGCCTGGAGAAGGCCAACACTGAGCTGGAGGTGAAAATCCGACAGGTTCTGGAGAAAAAAGGTCCAGATACCAAGGACTACAGTCACTACCAAGCCACGCTTGATAAATTACGCAAAGAGATCCTGGAGATGGTAATGAGCAATGCAAATGTGAGTCTTCAAATTGACAATGCCAAATTGGCTGCCGATGACTACAGGGTCAGGTATGATAATGAACTACAACTAAGACAGTATGTTGAAGCAGACATAAATGCATTGAGAAAGATGCTGGATGAGACCAATGTTGCACGACTGTTTCTGGAAAATGATGTTGAGGGATTGAAAGAGGAGATTATTGGGTTAAAGAAACAACATCAACtggAAGTGTCAGAAATATATAGTCAAATCAGCCGGTCAGGAGTGCATGTGGATGTTGATGCTCCCAAAGGACAGGACCTGGCTAAGATCATGGAGGAGATGAGAGCCAATTATGAAAAGATCGTCCTAAAGAACCAGGAGGAACTGAAAACTTGGCATGAATCAAAAATCACAGTTGTACAGGTCCAAGTGACCGAGAATGCAGAAGCACTGAAAGAAGCCAAAACACAAATCAGCGTGAGCCGTAGGCAGATGCAGCTTTTGGAAACAGAGCTGCAGTCTCTGATTGGAAATAGAGCATCTATGGAACAAACCCTTAATGAAATAAACCTGCGATATGGGATGCAGGTGGAGCAGTACAATAGCATAATTTTGCTGAGAGAATCTGAACTTAAACAGCTGCGTGCCGACATTCAAAGTCAGACACTGGAGTATCAGGCCCTGTTCAACATCAAGATGGAGCTTGAAGCTGAGATAGCCACCTACAGGAGACTTCTGGATGGAGAAGAACGAAAattaGTGAAAGAATCCATAAAGACAACAAAAGAATCCATCACGACAACTGTCACTGAGACACTAGTGGATGGAAAAATTGTATCCTCCAGCTCAAGTACTATCAAAAATTGATATAAACAAACATGACATCATTACTGTTCATGAAAGATACAATACATCAAAAACCactatgaatgttttaaataaaacaacattaaaacttA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230114 lncRNA downstream 99134 6349007 ~ 6351825 (-) True G155388
TU230003 lncRNA downstream 259639 6191097 ~ 6191320 (-) True G155308
TU229923 lncRNA downstream 531796 5815311 ~ 5919163 (-) True G155254
XR_006247895.1 lncRNA downstream 788003 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 903251 5525041 ~ 5547708 (-) True G155238
TU230159 lncRNA upstream 31315 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 32100 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 35285 6488624 ~ 6499749 (-) False G155391
TU230127 lncRNA upstream 56376 6509715 ~ 6514093 (-) True G155392
TU230195 lncRNA upstream 158654 6611993 ~ 6612524 (-) True G155435
XM_043225115.1 mRNA downstream 15984 6422212 ~ 6434975 (-) False eif4ba
XM_043225114.1 mRNA downstream 15984 6422212 ~ 6434975 (-) False eif4ba
XM_043225113.1 mRNA downstream 15984 6422212 ~ 6434975 (-) True eif4ba
XM_043224351.1 mRNA downstream 36524 6370216 ~ 6414435 (-) False tns2a
XM_043224350.1 mRNA downstream 36525 6370216 ~ 6414434 (-) False tns2a
XM_043224781.1 mRNA upstream 814 6454153 ~ 6457919 (-) True krt18a.1
XM_043225070.1 mRNA upstream 62472 6515811 ~ 6521844 (-) True zgc:171775
XM_043224003.1 mRNA upstream 145379 6598718 ~ 6602083 (-) True slc16a7
XM_043224004.1 mRNA upstream 145379 6598718 ~ 6602072 (-) False slc16a7
XM_043224005.1 mRNA upstream 145379 6598718 ~ 6602063 (-) False slc16a7
TU229892 other downstream 971140 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 995912 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1616439 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 2255961 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 277512 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 313269 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 320239 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 320239 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 320239 6773578 ~ 6822978 (-) False rps21

Expression Profile