RNA id: XM_043224785.1


Basic Information

Item Value
RNA id XM_043224785.1
length 6584
RNA type mRNA
GC content 0.45
exon number 12
gene id nckap5l
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14057970 ~ 14085170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGAACAATGGGAGGACATGGAGGCCACTGCAGACGGCAGAGACAGTTTCCTCGCACTTGCTTAAGGACCGCAACTGTACTTTCAGAATAACGTGAGGAGGATTTCCAAAgagaaacgtaaaaaaaattgGCGTTTGTGGCATTTGCGGATCCTCCTCCCGTGTCTCGCATTCGCCTTGCATGGGCTGCACTGAAACGCCTGGGATGCTCTGACTGGAATTAAAGGTTGAGACGATGTCGGAAGAGGCCCAAAATAGAGTAGATGAGGACTTTGAGTCTGAGGAGGGTGATCTGGAGTCCTATCTAGAGGAAGAGAGTAGCAGTGAGCTTCTGGAACGAGTGAGAGAACTTCAAGCCGAGAACTCTGCCCTTTCATTAGCAAACGAGAGTCAAAGAGAAGCATATGAACGATGCTTGGATGAGgtcGCCAACCATGTTGTCCAGGCTTTGCTCAATCAAAAGGATCTCAGAGAGGAATGCATTAAGCTGAAAATGCGTGTGTTTGATCTGGAGAGGCAGAACAGAACACTGTGTGAGCTCCTGCAGGAGAAACTGCACAGTCAATCATGTGTACATCAGCAGCAGCCAGGACCCTGTCTGGAGCACATCGGCGAGCTGCAGCACAGTGAACCTAACAAACTGATTGAGGCTCAGAGGAATGCACAGGCCAAGGGAAACAGTGAATGTGCACAAAATTGCTTACCAGAGACTCAAGGCTCATCCACGTCCATGGAGGCCATGTCCCCATTCTTGAAGAAGAAAGCACACATTTTAGAGGTCCTCCGCAAGCTTGAAGAAACAGATCCGCTTCGGTACCATCGTTCCTCCGGCATTCCCTCAATCTGTGACTATAGCCAGGCTCTTGCCTCTAAGGAGGCTGTATTAGCCTGTAGAGACAATTCATCCAGGTGCAATGCACCCAAAGCACATTGTTCCCATTCCTGTCCAGATGTTTGCACACATCAGCATTTGAATGGAGGAGAGCACAGCAATGTAAAATGTGGTAGTTGTAGCACATGCCTGATGCTGTCCAATAAAGATTCAGTCAGCTTAGCCAAGAGTAGCCACAACTGTTGCACTTCAGCTCCCATTACCATCGATAACCTCAATCTGGCTCGGCCCGATTTCCAAGAGAACATGGAAATGCAGAGCCTCGTGAAGCCTGCCACAGGTACAAGTGAACTGTTTATAAACAGGACATCTGGAGATATGTCCATTCTTTCAGCAGAGCAAGGTCTTAACCCACCGATTGATCCGCACTCATTAGAAGTCCCTGAATTATACTCAAGACTGACCATTTCTGAAAGAGATCAGCCCAGAGGATCTGATCATGTGTTGGTGGAAACAAGAGACAAGAACAGGTTATCTGACCTTCTGCTTGAATCTCAATCCAACAGGTCAAGCGGCAGCACCTGCAACGAGACGATTTGTGACGATAGCACAATTGATGTGGTGCTACTGGACTCAGACTTGAAGCACTTAAACTCTGTAGCGCCACAAAGACTAGAGAAGGAAGAATTTGCAACAAAAGAAGATGCTGACTGTGTCTGTCGAGCCAACATAGCCACCTCAAAGTTGCCAACTCTCGGGCTCAAAGACAATTTACAAACTGCACACTGTGAGATGGACAGCAATGATCCAGTCCACAAAGGTCTGTTATTTTCTCCTAATGAGAATCATACTGCATCAAAAGTACTGGATGATATCTCCGTCCCTGTGAAAGACACCCCTTCCGATCCGCAGTCCATTCGATCAAAAGTTGCCGTCAGCCCAAATCAAGTTTCCTGCCTTAGAGAGGTCAAGGCCTCACCTTCCAAACTGCTCAAGTTCCTTAAGATACCCACTCTTGGAGAACGTTCTGCAGTACCTGTTCCACCTCGTCTCAGTCCTCAGTTGACTCGTAGCTCAAAGATCCCTTGCCGGAGCAACAACTATGAGGTGCACAATTCCCCTGTAGCCACACGGAAAGCCACCACGACAGAGAGGCAAAGACAGCTGCCCCCTTCTAAGTTGGAGTCACACTCTGCTCCAACTTCTCCACCCCAGCCTGATGATGTCCCTGCACCATTGCCAAAGGACCTTGGCTGTGGTATCCCTAAAACAACTCGTGTAGCCAAGCCTACACAAAGTTCTAACATTCAGAAGACCCCTCAGAAAATTCCACACTACGAAAATGTCTCTGACATGTCCAAAACGGATGTATCCCAGCTGCTCGGAGAAGTGAGTTCATCTCTTCAAAATGCCAGCCCGGTTAATGAAGGAGCGAAAGGAAAGCAGACAAAGTTTGGTATAGAGCGACCTACGAGCCTCAAGCAAAAGGAAATATCACCAGAGTCTGATTCTTCAGACCAAGAGGACAGCTCAGATAGCCCAGTGTGGCATAAGCAAGTCAATCATCGCAGTCTGCCCAGTCAGTCGTCATCCCAGAAGGCTCAGAGTGGGATAAGCACAAGGTCCAGGAGCcaagagaaaaatgaaatgGTAGATAATGATTCACAAAGCTCTGAATCACCTTTTAAAAGGAACGATCCACCGCCCGTTCCTAAGAAATCAGGTATTGGTAGACATTCAGGTGAATCAAGTCATTCTTTTAAAGAACGACTAGCTGCACTTGGCAAGTTGAGGAACCCAGACGAATCCACAGCTTGTCCTCCACTtgcagagaagaaagaaattcagtCCCCTGCAAGCATACCGACACGAGCCACCGATAAAAGCAAAATTGCTGACAGAACCTCTGAGTGTAAGTCAGGAGAATATAGACTTCCTAAAAATACAGATTCCATTGAGGATAAATCATACCATTCAGGTCATCTTGATGGTGCTGTTtcaaaacaagcagcttttCAGCATGTTGATCAAGCTGTTAGGTCTCTTCCCTCTAGTACGTTAGTCTCCAAACTTGAACATGAATCTTCCAGAACTTTCCTAGCCAAGCAGGAGAGTCCAAAGTCTAAGATGCATCCACCATCTACTAACCTAGAGGCTGCACAGGCTTTGAGGAGCTATGCTAAGAGTACTGCACCTCATAGTCTTTCATATAATGGAAAGAATATTGCTGCTCCCCATAGTGGCAGTCCCAATAAAATTCCCCTCAAATCCCCAACTAAAACTGTGCCACCTTCTATGAGCAGAGATGGGAAACCTACTCAAGAGTTTCAGAGGTACATGTCCAAATCGGAGGACCGGAGCCATCTCAGGGCAAATAAGAAGAAGAACTCTTCCTACGGAGAGAGTCTTCCTCCACCACCGCCAAGGCCAGTAGAAAATGTTGAAGAAAAAAGGCACTCTGCCCCCAGTCCACAGTCTTCTATAGAGCAGAAGGTCATGAAGGGCATTGAGGAAAATATGCTGAAACTGCAAGAGCAGGATAAAGGGCAAATGGCTGAGGTCAAGCAAAAGGCTTCCAATGGAATTGCCAACTGGTTTGGTCTGAGAAAAAGCAAACTTCCAGCTCTTAGCCGTAAACCAGAAACGTCAAAAGCGAAAGATGACAAGAGAGATTGGAAACTTAATATATCATCAGTGGGCAAGGATTCCAAGGGGGCTACGAAGAAAACGGAGAGCGAGAGCCTAAACATTTCCATGCTGATTGAGAAGGCAGAGGGCTTGCATAAAGCTCTTGAAGAAGAGCGGGCTTATGTGAATGGAGTGGCCTTGGACCGACAAGGAAAGGGACATTCCTGCGAGGTAGTGATGGACCAGGCCCAGGGGCAGCTGTCTGTGATGTACAGAGGAGTGCCATCTGACAACTTCATGCAGCAACTGCTAAACCGGGTTGATGGGAAGGACACTGGCAGCATCAGCATGGCACATCGACGCCTCTCGTTTGACTGTAAATCAAGACCTGTATTCGGTCACCAGAGCGCTGGCATTGCTGGTCAGACAAGAAGCAGTGATGACATGGAAAAGGTTTCTGCGTTACTGAGTAAAGACATTACGTCAGATGAGAACCTGGCTGAGACGATTCATCATGAACACTTTGCAGGATCTGGAATCTCCACACAcacccttgacagtggcatTGGCACCTTCCCTCTTCCGGACTATAGTGCGAATGCTGGTTGCAAAAGCATTCCCAAAGGGAAGGTCCATGGGGAGAGTGACCCTTCTCATCTCCAAGGAAAACATGGCTCAGGGATGAAAATGTCCCACAAGGCCTGGACTTTGGAGAGAGAGCTGTCGTCTTTAGAAGAGGATTATATGGGGGGTCAGGATATGGATCATCACACTGGTACTTTGGAAAACAAGATTCCAACCAGCCAGATCGCAAACATCGTTCATGATGgCACTGATATCTGTGGAGCACCTTTGAAATTGGGCCCCACAAAGAACTGGACTTTCCCAAACCTCAAAGCATCTGCAGAGCCGTCTGAGGTTTATCTTGGCGTTGGAGATGGAGTGGAACCAGTGAGTCATAAGACTTCATTTAAGAGGCGCAACAAGACTAGTGATTCTGTAGCCAGCCGCGAGGGAGAGCCGAGAAGTCTTCCTCAACCCGGTCAGGCACGTAGAGGCAAAAGCCGCATTCCCGCTAACCCAGACATGGTGAGGGACACCGGTTTGGAGCTGGTGAGAGAGAGACCCGACGACGGTCTGTCTCCAAGCCATCCCCAGGTCCTGGAGACCCCCGAGTCCCTGAGCGACTCCCTCTATGACAGCCTGTCCTCGTGTGGTAGTCAAGGCTGAAGCGTTTTCAGAAGGAACTGAACGATAACCAGGTACAACCTTTTTGTAACCCCGATTCTCGTGACACTTCAGATATTTTTCAAAGGTGGATACTTACGGGATAACCCATTTTTTTTGAccgcaaaaaaaaatcccacgCAACACGTTACCCACGATATACCCACGTTTCTATCCTGACGGTCGGAAAGGACttttacagtgtgtttgtgGTGGTGTCATTTTAGCCCATTATATCAACTCTATCATCTCATTCGTGTTCTCTGTTTCTCAAGTGGTAGCAAAAGTAGTGACGTTCGACTCATGTCATCTTCAAATTACGTTTCAAGGACAAATCCCGAGCTCATCGCGACAGTCTTCCAGTTTTTAATCTCACAGAATGTTCTGGTTCTCATGCAACAtcagtgcacacacactcttagGTAAACATTTGTGTAAAGTTATTGGAAAGTGAATGTTAATATATGtgatttttcaattaatttaatatgcatatttcatgaaaagaaaaaaggaaaaacgcATATGTGTAAAACTGCATCAGCCGTAGACTTTTGattcattgtgttttaaagaaaaaaaaaaaaaacttgtagcAGCAACATACAGTAAGTGCGATCCATGTAAGACAGAGCTACAGTGTTCCAcggtgaattattattatttacgtttatttatttattttctttgaatgGCGTGGTAAGACAAGACCACCTTTTATTGGTTACTCATTTTAAGTTTTGTTCAAACATGTTCTGTGCCTGACTTTGTGTGTACATGTCTCGCTGTGCGTCTCTAGGTTAGCTTGTTCTCCAGACctggccatttttttttgtgtatgttacCTTTTGTTTTGCAACAGTTTAAAGAAACTTGCGTCTCGTGAGCTTATGACCTCATTTTGAACTGTGTATTGTTGGATCACCCTGCTTGCAATCAGCGAACAAAGCTTAAACTTAAACccaggaaattttttttaatcccagTTTGGCTTTGACTAGACAtgagaggaaaacaaaaaaatcatcaaatcgTTGAAAAGGTGGCTGACGATTTCTAAATGTTGACGTAATAATGCTGACTCTGCCTTACGCATCTTTCCACAGCTGTTAGAAATTAGCCTTCCATGGGCCAGGTTTCATGTTGATTACTCAGCAAAAGGGTTTTTTGGGGAAATATtcctgattttcttttctttctttctttcttttttttcccccacaaacCCATCATATTTCTTTAGCCTAAAACATTTTGGTGCAATTCAAGTCAAGATGCGTTGCATGCGTTTGACGATGCTAATCCTGCAAAATGGattacaggcaaaaaaaaaaaaccccaacaactTCATTTTCAAGTGGTTGCTCAAAAAGCCATAGGTTAGTAGATTAATAGTTCAACCCGAATCCTTTCTAATCTGTGCTGACCtcaatagctgttttttttacgaAATGACCACAATAAAAGACTAATTAGAAACATTCCCGAGCATATATGCTTTGTCATCCAACAGTCTTTCCAGGCctgtgtacattttttgtagaaataaattaactttgtAGTCATCCTCGATCCTATACGCATGTCATTCTTGATTTGTcacaaaatctttttattttttataagtaGTTTTGTGTTACTATCGTAGTTCCCTAATTTGCCTGCCGTTATAACCTTTATTTACTTTGTTGTAATTGTcaggaatattttatattagtttggTATGTTTACAAAAGAATTTATGATGAAGTTGTTAATAtatctgtaaaatgtttatataaggTGCTatctgatttttgttttcactcTGTCCTGCAAAAGCCATAAGTGTGTTTTCATAATCTCCTTTCTAAGCAATCGCCATCACTCATGCAACtcaataaaacctttttaagtA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233198 lncRNA upstream 29234 13981975 ~ 14040199 (+) True G157481
TU233195 lncRNA upstream 113887 13955112 ~ 13955546 (+) True G157479
TU233192 lncRNA upstream 115961 13944085 ~ 13953472 (+) True G157476
TU233190 lncRNA upstream 125514 13943589 ~ 13943919 (+) True G157475
TU233189 lncRNA upstream 127001 13942021 ~ 13942432 (+) True G157474
TU233221 lncRNA downstream 424 14085594 ~ 14086952 (+) False G157496
TU233222 lncRNA downstream 424 14085594 ~ 14087258 (+) True G157496
TU233216 lncRNA downstream 2411 14087581 ~ 14088519 (+) True G157494
TU233215 lncRNA downstream 2782 14087952 ~ 14088519 (+) False G157494
TU233223 lncRNA downstream 8908 14094078 ~ 14094458 (+) False c1qtnf12
XM_043225025.1 mRNA upstream 12866 14050691 ~ 14056567 (+) True kansl2
XM_043225021.1 mRNA upstream 18905 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA upstream 18905 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA upstream 18905 14044783 ~ 14050528 (+) False mlh3
XM_043224174.1 mRNA upstream 56554 14008220 ~ 14012879 (+) True szrd1
XM_043224790.1 mRNA downstream 9616 14094786 ~ 14126167 (+) True c1qtnf12
XM_043224793.1 mRNA downstream 20919 14106089 ~ 14126201 (+) False c1qtnf12
XM_043224791.1 mRNA downstream 20922 14106092 ~ 14126168 (+) False c1qtnf12
XM_043224792.1 mRNA downstream 20922 14106092 ~ 14126168 (+) False c1qtnf12
XM_043224789.1 mRNA downstream 20922 14106092 ~ 14126167 (+) False c1qtnf12
XR_006247900.1 other upstream 12612 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 14933 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2550897 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2553562 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2555587 11513773 ~ 11513846 (+) True trnan-guu_36
XR_006247782.1 other downstream 214531 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 598820 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 626977 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 650831 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 907180 14992350 ~ 14996145 (+) True G157656

Expression Profile