RNA id: XM_043224794.1


Basic Information

Item Value
RNA id XM_043224794.1
length 2322
RNA type mRNA
GC content 0.42
exon number 7
gene id ctdsp2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14085586 ~ 14094436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCAAGACTAGAGGGGGCTATGGATAAATATACACGCGATAGAGTAAACCGAGACGCGAAGCCTAGAAAATAGCAgataagagaaaacaaaacaaagtgtcATGCCCCTCCCATGTGGAAGAGAATAGAAGGcgggaataaataaatatcaaaatattttgtcGCCGTAGGTTTGAGATATTTTTGCGCGAACggaaattattcatttcaagCGTCGCTAGCTTTTAATGCCACTAAATGCGGACCGACTGTTCGTCGCTGGAAAAGGTCGGTTGGACGTTGAGGGCTGCGCGTTTGTTAGATGGAAAGTTCTATCATCACTCAAGTGCAGAGAGAGGATTCTCGCTTGTCTTCGAAAACAGACCAGGTGAATAAAAGCTCGCCTCAGAAACCCGGGAGCAGGAATATCTTCAAAAAGCTCATCTGTTGCCTTCGAGCTCAAGATGCCCAACTGCCAACATCACCTACCCATGATGCCTTGCTAGCGCCTGAGGACAATGGGACCATTGCCAAAATACCCGGAGAGTGTCTACTGCCAGCAGTGACCTCTCAGGACCAGGGGAAGATCTGTGTGGTCATAGATCTGGACGAAACACTGGTTCATAGCTCCTTTAAGCCAATAAGCAATGCAGATTTCATTGTGCCTGTGGAGATTGAGGGGACCACACACCAGGTGTATGTGTTGAAGAGGCCATACGTGGATGAGTTTCTCCAGAGGATGGGAGAACTGTTTGAATGTGTTCTGTTCACTGCCAGCCTTGCTAAGTATGCAGACCCCGTGACTGACCTGCTGGATCAATGTGGCGTGTTTCGCGCACGCCTCTTCCGTGAATCTTGCGTCTTCTATCAAGGCTGCTATGTTAAAGACCTGAGTCGCCTCGGCCGTGAGCTCCACAAAACCCTGATCCTGGACAACTCCCCCGCCTCCTACATCTTCCACCCCGAGAATGCTGTTCCTGTATTGTCCTGGTTTGATGATTCAGAGGACACCGAGCTGCTTCACCTCATCCCAGTATTTGAAGAGTTAAGTCAGGCTGACGATGTCTACAGCAGACTCGAACAACTCAGGGGTCCGTAATCCCTACACCACCAGACCAGGGCCAACCTCCATGTTGTGTAGCACTGACTGCCAATCACACGCGAGCAGCTCATATGACAGGAGACTCCGCCTTCTGACCTGAAAACAAACACGAAAGCTCATAATTCTGCTCAGCACGAAGTATATGCGGTTCTGCTACAAGGTTTGAGGACCTCAAACAGTTAGAACAGAAGCCAGCTTTGTCCTAGTCATTGAGCTTGAATTTTGCAATAACAATTTACAGATtttatattcctttttttacttgttttgttataagcatttttttttacatttaaagtgacatTATTTGGGAGATTAAAACCGTTCATAGGGCAGGTTATCCGTAATCTGCAATTACGTTATACAGCTCAGCAAGTAacataaagcacaataaactttCAGGCCAGTCTTTCTATGCAAAGTCCTACCTGAACTCAACCTCACATTTTTAATCTTCAACATTCATATTCATACTTTAAAGAAAGActagtgtttttaatgtattccaGATTCAGGCGAAAACTGCCGCAGGAATACACAGTCTTATCCAACATGCTATGCATACGTTTTccataaatgcaaatgtgacaCCAAGCACCCATTCGTCCTTGTTTCTGATCAGTCTTATTACTTTACAAAAGGCCTAGTTTATAaactgcaggttttttttttatatatatactgtcgCTGAGGTGCATTATCATGGCATTACTTAAAAAAGTACctgtttttaacactgttttATGTGAATTACAACTACATGCTTATCTCGACACTTCCTGTATTCAATCTTAAAGTGGCCTTATGTCTGCTTCAAGTGTACATGATGGGGTTTTATGATACGCGAGGAGCAGAATTAACACCACAGAATGAACCAAAGAGATTTATCTTGTTCGGTaattgtctttctctctgctgtatTTATGCAGACAATTACTAGTACTGTCATCTATGTGTATATTTGGTTGAACTTGAACTTGAATTGTCTTTGTATGATACTGTCTGTTTGACGCAGACCACACGCTCCACCTCTGTATTTCatcttatattatttaaacacgatcatgtttttatattataagttgtttttactgtagcacaaatattcaaaatggccatgttttataaaaaaagggcAGATTATTgtgttttggtttaaaaaaagatgccCTGATAAGGTCGGTGTTGCCACGTTTTTGACTTTTGTATTTGCAACAATAaattttttctgtggaacatta

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233774 lncRNA downstream 9649 14057837 ~ 14075937 (-) True G157863
TU233703 lncRNA downstream 259997 13823993 ~ 13825589 (-) True G157826
TU233679 lncRNA downstream 312278 13772775 ~ 13773308 (-) True G157813
TU233665 lncRNA downstream 338415 13742257 ~ 13747171 (-) True G157799
TU233620 lncRNA downstream 649725 13433755 ~ 13435861 (-) True G157765
TU233788 lncRNA upstream 47503 14141939 ~ 14142168 (-) True G157874
TU233789 lncRNA upstream 49226 14143662 ~ 14143930 (-) True G157875
TU233765 lncRNA upstream 128373 14222809 ~ 14225394 (-) False zbtb48
TU233794 lncRNA upstream 141916 14236352 ~ 14237014 (-) True G157880
TU233804 lncRNA upstream 148145 14242581 ~ 14243955 (-) True G157885
XM_043224173.1 mRNA downstream 45508 14031726 ~ 14040078 (-) True tmem240a
XM_043224172.1 mRNA downstream 45510 14031726 ~ 14040076 (-) False tmem240a
XM_043224171.1 mRNA downstream 56418 14025634 ~ 14029168 (-) True LOC122328469
XM_043224162.1 mRNA downstream 60060 14013247 ~ 14025526 (-) True atp13a2
XM_043224166.1 mRNA downstream 79927 14002436 ~ 14005659 (-) False sult1st5
XM_043224788.1 mRNA upstream 5961 14100397 ~ 14104226 (-) True sdf4
XM_043225302.1 mRNA upstream 56087 14150523 ~ 14196687 (-) True syt6a
XM_043225463.1 mRNA upstream 130152 14224588 ~ 14233051 (-) True zbtb48
XM_043225081.1 mRNA upstream 163414 14257850 ~ 14272460 (-) True avpr2aa
XM_043224951.1 mRNA upstream 192525 14286961 ~ 14293566 (-) True idh3g
TU233040 other downstream 803259 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 868178 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2160936 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2283954 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2340191 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 232530 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 486658 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1252981 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1604833 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1604833 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile