RNA id: XM_043224795.1


Basic Information

Item Value
RNA id XM_043224795.1
length 5054
RNA type mRNA
GC content 0.44
exon number 23
gene id pik3cd
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9099273 ~ 9118072 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGTGCTGAACGCGCAGTGCAGACGGCCACTTTAACACCTCCAATCATTAAAGGATTATCAACACTTCTGCTGTCATTTCAGACCGTTCAAATACTGGCGTCTTGATCGCTGACCGAAATTCACGCGCCAGGAAGATATCAATTTTCAATGTCAAAGTAAAGGAGCATCGCTGATTCTGAAGATGGAGAAATGAACCACCGGTGAGGCTCGAAGGAGTGGGGTCAGTTGTAGATGAGCTTCCTGCACCATGCCGCCGGGGGTCTACGGCATGCAGGATGTGTGGGAGAGGGAGGGTCGGCAACATATCAACATGGAGTTCCTCCTCCCCACGGGGATCTACCTCAACTTTACCGTAGCATACAGTGACACCATTAGTAATATCAAGAAGATGGTGTGGAAGAATGCCAGGAACGAGCCTCTGTTCAGCGCCCTGAGTGACCCGGATGCCTACGTTTTCACCTGCATCAACATGACCGCAGAGCGGGAGGAGCTGGAAGACGAGCAGCGCCGCCTCAGTGACGTTCGGCTATTCCTGCCAATCCTCAGGCTGGTGGCCCGGGAAGGCGACCGAGTCGAGAAGCTCATCACCACCCAGATCAGTCTGCTTATAGGAAAAGGTCATCATGAATTCGACTCCCAAAAGAACCACGAGGTGAATGAGTTCCGAACTAAAATGCGGACGTTTTGTGAAGATCGCGCTCAGGACCGTCAGATGTCGCCTTGGGATCAATGGATGGAGTTCAACTTCCCGTGCGACTTGGAGCCGTGCTCTGTAGTGGCGCAGTCCGGGAAATCGCGCGGCGTCAAAAAGATTTTGGTCAATGTGAAGTTTGAAGGCAGTGAGGAGACCTTCGTTCTTCAGCAAGATCCACAGGACCTGCCGATTTTTCTGAAACGGAACGCCTTGAGAAAGAAGTCCACCGTGTTCCGATCGGTGAAGCAGGAGAAGCCAGAGGACTACACCCTCCAGGTCAACGGGAGGTGGGAGTTCATCTATGGAAAATTtccactctgccagtttaaatatatttttacatgtttgcaTGGAGGCATTACCCCACACCTGACCATGGTGCATCATTCAGTCATCATGAAGTACCAGGAGGAACAGGGTGGGCTCAGTAACCAGGTGTCCAGGACCCGTGCTCAGTCTAAACCGCCACCCCTGCCTCTGAAAAGGcAAAACACATCTTCGCTGTGGTCTATCCACGAGCCTTTCTATATATACCTTCTACAGGGCAGCCGAGTGAATGCAGACGAAGGCATGAAGCTGGTGGTTCAGGCTGGCCTCTTCCATGGCAGTGAGCTCCTTTGCAAAGTGGTGACCAGCAACGAAGTCAGTGTTTGCTCTGAACCCGTATGGGACCAGAAACTAGTGTTTGACATCGGCGTGAGTGACCTGCCTCGAATGAGCCGCCTCTGCTTTGCCCTCTATGGCGTCATCGAGAAGACCAAAAAGCGCCCTaccaagaagaaaaacaaaagagcgGACTGCCCCTTGGCCTGGGTCAACACGATGGTGTTTGACTACAAGGACCAGCTTAAAACTGGAGAATTTTCCCTCTCCACATGGCCATCAGTCCCAGatgataAAGGGGATTTATTGAATCCTATGGGCACTGTGGAGAAAAATCCAAACATCGACAGCACGGCTGGTCTCCTGATTCGGTTTCCCAACATCAGACCACACCCCCTGTATTATCCTCTAATTGAAAAGCTAAATGAGTTGGGTATGAATGGCGAAAAAGTTGTTGCTACAAAAGAAGagCACCTGAAACTGAGAGAGATTGTGGACAATAAAAACTACACGGAGTTCTTTGAGGACGAGAAGGAGCTTCTGTGGAAGTTACGTGAAGAGGTGAGGCAGCGATACCCGGAGAGCCTACCCAAACTCCTCCTCATCACTAAGTGGAACAAACACGAGGACGTGGCTCAGATGGTTGGTCTGTTACGGAAATGGCCAGAATTGCCTGCCATACATGCTCTAGAACTTCTGGACTACAGTTTCCCTGACCCTCATGTCCGCTCCTTCACCATCCGCTGCCTCAGGAAGTTGCGTGATGATGAGCTCTTTCAGTACCTCTTGCAACTGGTTCAAGTTCTGAAGTATGAATCCTACCTGGACTGTGACTTGACCTGTTTCTTGCTTGACAGAGCTCTGACCAACAAGAAAATAGGTCACTTCTTGTTTTGGCACCTCAGGTCAGAAATGCATGTGCCCTCAGTCAGCTTGAGATTTGGACTTATTCTGGAGGCGTACTGTCGTGGGAGCATCTTCCACATCAAGAGCTTGATGAAGCAGAATGAGGCTCTGAATAAAATGAAGGCTCTCAATGACTTTGTGAAATCAGCCAGTCAGAAGGCAACCAGGATACAGACTACAGAGGACATGAAAGTGTGCATCAAACAGGATACTTACATGGAGGCGCTTTCGGATGTTGTTTCCCCTCTTAACCCAAGCATCGTGCTGTGTGAACTATGtgcAGACAAATGTAAGTTCATGGACTCCAAAATGAAACCTCTATGGCTgatgtataaaaacaaatgtgatcATGTGGGCATTATCTTCAAAAATGGAGACGatctGCGGCAGGATATGCTTACCCTTCAGATGATTCAGCTAATGGATGTTTTGTGGAAAACAGAAGGTCTTGACCTCAGAATGCTGCCCTATGGATGCTTGTCAACCGGAAACAAAACGGGTCTCATCGAGGTGGTAAAAAACTCAGACACTATCGCCAACATCCAGAGAAACAACAGCAACAGTGCAGCCACTGCTGCCTTCAACAAAGACGCTCTTCTCAACTGGCTCAAATCCAAAAACCCAGGggaTAAACTGGATCAAGCCATTGAGGAATTCACTCTCTCCTGCGCAGGCTACTGTGTAGCTACATATGTTCTGGGAATAGGGGACCGTCACAGTGACAATATTATGATCAGGGAAACGGGTCAGTTATTCCATATAGACTTCGGGCACTTTTTAGGGAACTTTAAGAGCAAATTTGGGATCAACAGAGAACGCGTGCCTTTCATTCTGACATACGACTTTGTCCATGTAATCCAGGAAGGACGGACCAACAACAGTGAGAAATTTGAACGGTTTCGTGAGTGCTGCGAACAAGCCTATAAAATCCTTTGCCGGAATGGGACTCTTTTTGTGAATCTTTTTGCCTTGATGAAAGCTGCAGGACTCCCTGAGCTCAGTTCCTCCAAAGACATCCAGTATCTCAAGGATTCTTTGGCACTGGGGAAATCTGAAGAGGAAGCACTGAAGAACTTTAAAGTGAAATTTAATGAAGCTCTAAGAGAGAGCTGGAAGACCAAGGTGAACTGGATGATGCACACTTTTGCCAAAGATAACAGATAAATGGCACTCGATCACAGGAGATCCACTGAAACCCTCTTGATGCTGAGATTTAAACCAATGCAGCTTTGAACACAATATATGTTGCACTGCTCTCTGGCATTTATGGCATTATACTTCCACGCAAAGGCAAAATGCGGTATCGGTTAAAATCGAGTTCATAGGTCAAGTGCATCTAGATTCTATGTTTAAAATCCAGAAATCCGGTCCAAAACGTTCCTGCGTTTTGCCTTTGCAGGGCAGCATAGACATCAGCAGCTGTTTAGCGAATGTTTACATCTGTGACGTAATGGTAAATACTTCtatacatttgttttagtgaGATCTACCGCTTGAAACGAGTGTAATTTCAGATACACGTTGTATTTGCAACACACCGCACTGGGAATTGAAGCTACTAATTTAACAAACTATTGGCGTTCCACTAATTTAACTAGCATCTCCGGTTTGTTTCTGCCACCCTTGTGCACCTGCACAGAGAACAGCTCAGAGCAAATGagattaatgtatttataatttctaACTGTACAGCTTTTATTCTGGAGAAGAAAGCACTAAGTGTGTTTTCATAcggtttacattttttgtttcaggatttttgtttctctgtttaCACGAATGGTTTGGTTGTACATATTCTTTAATGTATCATACTTATATTTGCATTccttaaaacagtattttttcattttgaatgatttgTATAATAGCTAAAATTGTTCATCAAGGAAGCCTTTGTATAGTGGTGTACATGAGAAGACATTTTGTATGTCTGTGTAGAAATGAGccttaaatattttgtatttgtggGGTATTCTGTGCCTTTGGGATAAGACACAAGCCATCTTGAAGTCGTGTCCAAAGAGTTTGCTTTTTGTTCAGTGAAATATGTGCAAAGGATGTATGCCTTGTACTACTGTACTATAAATCAGGGCAAAAGTGGAATATAATTGCTCTCTAGAACAATGCGCTGTTATTTTGTGCCTACTTGGAATATAGAGTCAGtcacgtttgtttttttttcctcttccgGTAACCTTTACACAGTTCTAGAATGTATCACCACAGTATTCTCTGACTGAATCCTCTGCTACCTGATTCATGAAGATACTTTTTCTCAAAtgcttaaatgctgtttatttagaATCTTTAAATGTCCTCCAgaatgtgaatttttaaaagAGATTTGAAGCTAAATCCATCTGATCTTTATCGTTTTAGTAATACAAGGAAGATTAGTGGGCAGAGGAACATCTTTCACATAATGAATGGATTTTAGCATTGGTGTAGGTAACTGCTGGACCGCTAACCGAGTACCACTCACCCTCTGGTCTTGTCCAAgccttcatttttttgtttttgattgtgTATTATGAACTTAAGTCACTTCACAGTGTGAAATGCCAATTTCTCGTTTTACTGatgtattcagttttttttttttttttaaatgacggCTTTGTTGTGAGTTGTGGAAATGTGCtattcattccttttttttttgccataaattATTGATTATGAAATTGATTTGTGggttatgtatttgttttggttAAATTAGTGTTTTCTGATGGCTAAACGAAGGCACTGGGAAAGAAGCCAGACCTTTagttgtatatgtatatgtatgaaaataataaatgggtgcattttttttctgacattaaaataatagttcatCCTCA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230977 lncRNA downstream 2010 9079533 ~ 9097263 (-) False ctnnbip1
XR_006247890.1 lncRNA downstream 26329 9070384 ~ 9072944 (-) False LOC122329247
XR_006247891.1 lncRNA downstream 26335 9070384 ~ 9072938 (-) True LOC122329247
TU230942 lncRNA downstream 470170 8628699 ~ 8629103 (-) True G155933
TU230786 lncRNA downstream 473631 8624926 ~ 8625642 (-) True G155825
TU230983 lncRNA upstream 35008 9153080 ~ 9153502 (-) True G155968
TU231000 lncRNA upstream 70441 9188513 ~ 9188897 (-) True G155979
TU231104 lncRNA upstream 483890 9601962 ~ 9602477 (-) True G156051
TU231107 lncRNA upstream 489416 9607488 ~ 9607948 (-) True G156054
TU231109 lncRNA upstream 494178 9612250 ~ 9612596 (-) True G156056
XM_043225456.1 mRNA downstream 1971 9079532 ~ 9097302 (-) True ctnnbip1
XM_043225457.1 mRNA downstream 1999 9079532 ~ 9097274 (-) False ctnnbip1
XM_043224217.1 mRNA downstream 36372 9029720 ~ 9062901 (-) False clstn1
XM_043224219.1 mRNA downstream 36373 9029720 ~ 9062900 (-) False clstn1
XM_043224215.1 mRNA downstream 36374 9029720 ~ 9062899 (-) True clstn1
XM_043224054.1 mRNA upstream 2800 9120872 ~ 9122731 (-) True foxl2l
XM_043224050.1 mRNA upstream 5928 9124000 ~ 9135259 (-) False tmem201
XM_043224049.1 mRNA upstream 5928 9124000 ~ 9135259 (-) True tmem201
XM_043224051.1 mRNA upstream 12585 9130657 ~ 9135259 (-) False tmem201
XM_043224052.1 mRNA upstream 17343 9135415 ~ 9142320 (-) True slc25a33
TU230970 other downstream 172663 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 179548 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 179548 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 470882 8625758 ~ 8628391 (-) True G155827
TU230763 other downstream 547296 8545394 ~ 8551977 (-) True G155807
XR_006247818.1 other upstream 78155 9196227 ~ 9209964 (-) False ccdc187
TU231373 other upstream 683713 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 683713 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 714056 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 714056 9832128 ~ 9833682 (-) False zgc:153284

Expression Profile