RNA id: XM_043224798.1


Basic Information

Item Value
RNA id XM_043224798.1
length 4642
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122328822
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13436542 ~ 13442457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACCGTGCTATTTATAACAAATCATAGGGCCTGTGCTGTACCTCTTTTACTCGGAAGGACACAGTTCAAAGGACATTTACTATACCCCAGGCTACTGAAGTGGTGTGACAGGCTGACTGCTCTGGGACTTTTGCACTTTCACGCCATTGAACAGAAGCACCTGTGTATCATCCATCACAATGGACGACTTTGAATACAGTGTGCACATCTCCGACCAAGATTGGGACTGTTTTTTTCAGGAGTGTGAGGACTGTGACCTGCTCTCTCCAGTGCTCGCCAGCCGAGAGGACTCAGGTATGAGTGACATTGATGAGATAGGCTGCCTTTTTCGAAGCAGGACCCCTGCCGTTGGCACAGCACCCACAGACCCGGATCCAGACCTTCAGATTGATGGTCCGCCAGACTGTGAGGGTTCACCTGTCTGTAATTACCTCAGCAAGTACGGAATACGTAGTCCAGAGCAGGTTCTCTCTGGCAGTGAGGAGGACCTGCACCTTCAGACTGTCAATCTATTCTTTGAGCAGTTAAAAATTGTCACTGAAAATCAGCAGCCCTTGGAACAAAGCCATGTTATCATCCATGCAAGTGAGAAGACAGGTCATCCGGAGGGTAACCAGGATATTCCATCTGGCCGAAATAAGTCCAATCTTAGGGGAGAAATCACTAAACAGGGTGCAGCTCATACCTGGGGTGATATAGTCTCAGAAAAATCATCTGTTTATGCACAAGAAAATGCATCAATGTCTGACACAGAACTAGTCATTGGAAAGAAGTTATTCACCACACCCCTAATTACAGTAAGAACGAAGCAAGAGAAACAGGGAAGATGTCTCAGCAAAGATCTACAGCTCATACCTGAAACAAAGCCACCTGAAAAAGAGAAGATGGTAATGGTTAATAGGAAAGAGGTGATTGACCCATATCCAGCAAGACAAATCATTGCTCAACTGGATGCTATAAGTAGTTCTGACTCAAAAGATTCACCAATCGGTCAGTTCCCAGTGTCACCTTCcagaagaaagaggaggaagaaaaagagaatgaatgTTGAACCACTAGAGCAAGGGCATGAGGACAAGAACTACCAGAAAAGTGAATCAGAGGAAGAGAGATTTATTCAGTGGGAAGAAATCAgcaaccttcctgcaaatgtctGGAAGACAGAGCAACTATCACTTCAAAGAATTAAAACACCTTTGATTGCACACAATACTGATTATTTACAGCTAAGGAACACATTTGACTTGGAGGCCTCCGCTGATTGTAAGTTTTCAAAAAGCTTGCCAGTATCTTTTACCAGTAATTTAGGCACCACACTTCCAAAGCCGGAGGTTGGACACATAAGCTTTAATACTCTTTCCAAAGGCATGCATGATACATCCCTTGTAAACAATGGACAATTGAAAGCAAAGATTTGTGAGCTGTCATTATTACCCCAGATAGATGAAGTTCTGAATGTAAAAGAAAGTGGATTAAATTTAACTGAATCCCTTCAATTTGATCCTGCTGTGCACTTAAGAGAGAGCCGAAACAGTATTACAGAGACCttatcagcacctctaagtgaTAATTCTGATCCAGGATGTCAGAGGAAATCCTTATTATCGCCTAGTGTTTCCATTGATGTTGATTTGACAGAGCCTCCTTCCTCTACATCATTTAAATTGTCTGAGGACAAAGATTTGTCTTGTTTAGGAAAGGAGACAGACTGCTCTCCATTAAAAAATTACGAACAAACAATTCCAAGCAATAGTAATATAGCAGAGATTCAAGCTACTGAGGAAAGAAGTTTGTCTTTAACTGAAAGCATTGATAGAGCAGAATCTTCTTCAGATAGAAACAGTCCAGAAACCTTTGCTTGTTCACAGGAGGCTtctcaaaaatgtaaagtatGTATTCATAACAACATTTCAGAACATCAAAGCCATTTGGTTTCTGAAACCattgaaataaacacaaatataccTTTAAGTGAGACAAGTGCAAAGACAGAGAGTCATTTGTCTGATAATATTAATGATGGAGCCGATGAAAGTATCACcgaaagcagaaataaaactagTGAGGTATTAATTGTGAATGCCTCATCCATAAAGCCATGGAATTCAGATGAATCAGAAGATAAGAGAGACATTAGTGATAATGAAGTTGCTGTTTCAGCCAGGAATAATAGTGAACAGCTATTTTGTGGAAAGTCCATCATATCTAGTGGTTCTACAGAAGGAATGCTCACTGAAAAACCTACTCAAGATGTTTCAGAGTTGCCTCAAAATACAGTTACTGAAGACACTTCCTCCATTGAATTGAAAAGTGAAACCAAAAATCTAAAGCGTGTTTCTCCTGAAGCTTCAAATCAACTTCAATGTCCTGTGTTTGCTATCTCCTCCTTTTGGAATGAAATGGAGAAGCTAACCATCAATGACATATTGCGTCTGCGGTTGATCAGTAATGCCCAACACCCAAGTATTCTGACCCAGCCAGAGGATGGTAGCATAGCAGACACTACAGATGCTGCAGACTCGGGCTACTTTACACAACCTGACGACTCTAAACCAGACCGCTCAAGTGGAGACATGTCTTACATATCTGATCTGGATGAAGACCTTGTACAGCTTCAAACCCCATCTCCTTCTAAGCAAGAGGATGAGTCGAGTGAGTTTCCCAGCTCTTGTGGTGTTATGTGGGAGAACGATCTAGATCCAGTGTTTGTGAGTGATGAAATGGTGCACACAAGTTCTGAAACTGCTCTTTCTGAACATCTCTACACAACAAATGCTCAGCAGTGCTTCAGAAGAATGTGTAAGAACATGTCTGTGCAGAATCTGCAAGATCTAGATactcaaccaatcagaaaaaTCCTAAGAAATGCCTCAATGCACTCAATCCATTCAGAGGTTGAAGATGATTTTATGGATCCTTTTTACCATGTGAACACATCCGGCTCAAAGATCTTTTCTGACGATGAAGAAGAAATAGAAAGCAGTGGTATAACGTTTTCTGAAGTAGTCCACTATTTCTTTGGTGAGGATGAACCTGAACGTTGTACGTCTCGTGCAGATAACATAGCTGCCTCGTACCTTGATGGTCCTGGCACCTCATTGCCTGAGACATACGACCATTTTTTTTCAGAGTTTGATTCTggaagttttgtttttccaattGTAGAAGAGTCAGGGGGTGATAAAATGGTTCCCATATTTTCCTGCTCGCGCTCAGCTAACAGGAACCTTCAGTTCCCAGAGGCTTACGACTATTTCTTCCCTGATTCCCCTGGAAGTtcagatgaagatgatgagaATGACAATGCGGCAATCAAGGTGGTGACACGGTTTGACTATAAGTCTCCCAACCACGATCCTGTTGACATGTACGAGCACTTCTTGTCTGAAGATGAGAGCGACTTCCTCTGGACGAACCCTCTTTCACTTAGAAAAGTTAGACGCACAGGTTTTACTGTCCCTAAAGGGAACACATGTTCTGGGGAACTTGTCCCTGTGAAAACATTTCCCAAAGGAATCGTTCAACCTATTAACGCCTTGAGCCCTGATGGGAGCCCTTTTCCAGACTCCTTGCTCTTCAACCTGGAGAACCGGATCTTCCAGCAGCTGGCTGAACAACAGAAGAAGTGTATGGAGATTCAGACAGTTGTTGCTGATCCTAGGTTGGATGCTCCATTTTTGCCTCTTAGACAGGCAGACATGTGCTTGGTTTGTATTGCTTTTGCCTCATGGGTGCTAAAATCAACTGGTTCAGGAGCAGACACGTGGAAAGCcgCTCTACTTGCGAACGTCAGTGCGCTCTCTGCCATACGATATCTGCGCAGACACAAGAGGGAGGAGGTCTCTGGAAAAACTCCTTTGCGTCAGATAGAGCCAGCATAACTGAATAGCACAGCACAGTCCTCAGATCTGATTTCAGTCACATCTACCTTTTTCCATGTAATCCAAAAAGGTCATTGCGAAGATCAGACATGTGCATGCGTGAGTTTTTCCATCATTCTCAGTacgtattattatgattaactCTCTGATGTGTGCATTTCTGATGAACTCAGTTGATATACAATAGATGAATATAAGAAAATGTGAGAAATAAACTGTGACTTCAGGCCAGtggcattttaataatctgcaTATCCAGATTGTAGTTGCAAATGACCAAAGATCTTTTCCTGATTCTGAGGTATAGTGGATTCGCTGCTTGCAGTGAATGCTGTTGTGTGTTGTGAGGAAAGCAGCAGTATGTTGATTAATATTTGATAATGAGATGCTTATGAAGGTGTTATGATGGAAGATGGACACGTGTGTCTAAATAAGTGTACTTTTGGAGAGATTTCAATGGAAGAGCTAATGTCTATGCACAAATAGACAGTGTTGTGAGACTGTTGGGATGCTGGAATTTTTGCTGGGCCAAATTATTTTGGTGTATTTATAGACCATCTAAATATCAAATCATAAACTCGTATGATTGTGGTGGTTGAGGAGAGATCCCCTCACATGATTGTAAAGTGCTTTGCTTTGAGTGTATAGCAATACACAATAGCGCTAGGCCTATAAAAATGcctcactcattcattcatggtgttcctttaaaaatcatgtaGGATAAATAAATCTTATGTTTATTTGGAAGAatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233620 lncRNA downstream 681 13433755 ~ 13435861 (-) True G157765
TU233023 lncRNA downstream 314516 13121813 ~ 13122026 (-) True G157365
TU233022 lncRNA downstream 316026 13119998 ~ 13120516 (-) True G157364
TU233021 lncRNA downstream 316989 13119183 ~ 13119553 (-) True G157363
TU233019 lncRNA downstream 318374 13117380 ~ 13118168 (-) True G157361
TU233665 lncRNA upstream 299800 13742257 ~ 13747171 (-) True G157799
TU233679 lncRNA upstream 330318 13772775 ~ 13773308 (-) True G157813
TU233703 lncRNA upstream 381536 13823993 ~ 13825589 (-) True G157826
TU233774 lncRNA upstream 615380 14057837 ~ 14075937 (-) True G157863
TU233788 lncRNA upstream 699482 14141939 ~ 14142168 (-) True G157874
XM_043224557.1 mRNA downstream 34872 13376444 ~ 13401670 (-) True noc2l
XM_043225300.1 mRNA downstream 307904 13123448 ~ 13128638 (-) False ca6
XM_043225299.1 mRNA downstream 307904 13123448 ~ 13128638 (-) True ca6
XM_043225087.1 mRNA downstream 356318 13067327 ~ 13080224 (-) True spsb1
XM_043224194.1 mRNA downstream 495657 12936321 ~ 12940885 (-) False LOC122328487
XM_043225556.1 mRNA upstream 51124 13493581 ~ 13495390 (-) True her9
XM_043224635.1 mRNA upstream 336568 13779025 ~ 13783742 (-) True LOC122328742
XM_043223983.1 mRNA upstream 392599 13835056 ~ 13851039 (-) True arhgef19
XM_043223984.1 mRNA upstream 410009 13852466 ~ 13868569 (-) True ano11
XM_043223985.1 mRNA upstream 411816 13854273 ~ 13867893 (-) False ano11
TU233040 other downstream 154215 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 219134 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 1511892 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 1634910 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 1691147 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 884509 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 1138637 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1904960 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 2256812 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 2256812 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile