RNA id: XM_043224799.1


Basic Information

Item Value
RNA id XM_043224799.1
length 2849
RNA type mRNA
GC content 0.48
exon number 16
gene id plekhn1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13422930 ~ 13435867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGCTTCAGTATCAGTCTCGCCTCTCTGctgaacagacacacacacacactcactccaggGAGGTTGGATTACAGCAGGGATCACTAAACTATATTGATCTTGCAGGCAGATACACCAGCACTTTCTCATCAAGGAGATACACGCACAGTCCCAGGATCGACATGGGGAGTAGTATGTCATGTGTCCCCCAACACAACTTCAGGTTCTCCAGCAAGAGCTTCATACGCAGGAACAGCAGCCGCTTGTTCCGGAAAAAGTACCCACAGGAGGGTCAGGAGAAGTCCAATAGCATCATCAACATTCTCTGTACCGTCACACCGAGAAAGGAAATGTCCCCGAAAGATCTCCAGGCGATCGAGAACATCAAATGGGACCCTCCGTTCCCCTATGACCCCGTTAGTGGATGGAAAAAGAGCAGCATCAACGTAAAGAACTACGGCAGAATGATCCACAGCTCCAAAGTTCGCTTCCGCTTCCTGCACTGCCAGGACGTGCATGACTGCTATCTGGACCTGTTCCAAACCCATCTTCACTTTGTCTCCAACAACACAACTGGACTCACATACCAGGGAACACTTCCTCTCAAAGAGCTCACAATTTGCAAGGTGCAGAACAGGAACAGCTTTGGTGATCCGCAGGAATTTGCATTCCAGATAAACGGGGTCAGCTTAAATCCTATCATCGTGTACTGCTCAACAGAAGAGGAGATGAACAACTGGTTTGGGCTTTTGAAAGAACAAATCGAGGCCAATGGTGGCAGTGCTATCGTACCAGAGACATACGCAAGAATTAAGGTACAGTGCTCAGAAGAGACTAAAGTGGAAAAGGAGGAGCTGAGGAACTCCATCAGTAAAGAACCCATTTATGAGTGGGAGGGCTCCCAACGAGAGAGTCTAGGGCCCATCACTTACGTCACGAAAGCCAGGCTGCAACACATGCCTTGTCAGGAGCAGTATGACCGTCTGCTGGTGCTGTATCCCAACTATCTCATAATTCTGTCAGAAGAGAGCGATGGCCTCTTTTACAAGGGCAAACTTCCTCTCAACATGATCACAGTTACAACTCCGTGCCAGGACATCAAGCCCAACACGTTTATGATCGAGGGGAAGTTGATAAACCCCATCATCGTGTCCTGTCTGGACAAGAGCGAATTCAATGACTGGATCCAGTATTTTAAAAGCGCTGACGTCCCCATTCTTAGCCCTCCTCCCCCTGTCTATGACATCATTTACACTCCAACACAGAAACAGGCTCCAGAGTTCGACAGGTGGAGCGGCAGCAGCCATGGAGCTACCAACCCGCTAAAACAGTCCCAGAACAAACGCAGATCCCATGAGCTCCAGCTGCCCAGTGCCGATGACAACCCTATTTCCCCTGGTTATGCTGAGCCTCTCTGTTTCATTTCCAGCAGGCCTAACTCCTCAGACACGCAGTACTCGGCTCACCTGGGCAGCAGGAGCAGCAGCTTCTCCTCTCGAGCCCGACCGGCCCCTGACCACCGTCCTGTTTCACTCCACTACTCCTCCTCTCCTCAAACGTCCTATCTCGCTTCAGAGGGGCTTATGTCACCGGTTTACAACACGCCGTACAGTTCGGTTCACAGCAACGGCCCCGTTCAACGCATCGAGAAGGCCCCTCTAGTAAAGTCAAACAGCTGGAGCACGCCACAGACAAATGTCAAACACCAGCTCTTAATACAACACCGCCACTCAGAATTGATCGGCCACCGCAAACCTCTCTCGCCACTTTACGACGACCCCAGCACCCCCGGCATGTACCCTCTGGAGGAGAGCTCTGCACATGCATCGcACTGTTCTCGGGGCTCCATGGAGCAGTCGTATCCTCCTCTCCTTCCTCCCTCCTTCCGGCTCTGCACACCTCCTCTTGGGCGGAAAATCAGACACGGCCAGGCCCCGGAGCCCGAGCTGGTCAGCGGTCAGTGGTCTGATGAGCTACGTGCCCAGGCCGTTTCCAAACTGAAGTTACTGCCCGCCCCAAACCGACAGCCAGAACACAAACCACTCTCTAAGAGAGGATTCTCAGGTCACACTGTCATGGAGTCGCAGCAGATATCTTACAGTTACTCACCAGACGACTCTTACCTTCAGCCAGTGGATCCAGATGACCAGGAAATGGACTATGATAACATATGGGAGTTTGACCCGGATAATGGGATGATTCAGCCCCTGCCTGGACCTTTACCACACCGGACACCGGCTTACTTTGGAGCTCAAGGCCTGGGCGCTATGACAACACAGCAGAGATGGTCATAAAAGAGAACAATGGGCTTATGCCCGTCCGGACTTGCACACATAGCAGACTAATCAAAGCCACACATGCACACTGGGCATGTTTTCACCGTGGGCCGGCATGCCCGAGCATCTGGATATGCACACTTTGTTTATTCAGTGGCTCTATGACATATTTTGCACAAGTAATACCCTTTATATGTGTGGTGATGGTTTCAGACTGCTGTATGCATTCGGTACAAACAATTGTATTACAATGATTTACTCATTTATGTATAGAagcaaaaaatacttaaaaggTAGCATTTGggagtttttacatttagtctagtTTGTGAGTCCTACAAACTAttgatttatatgcatatttttttaatgcaatgtaaatatgcaatttttttctatttaagttttaaatgtaagcatttattattgttgatttaatattatttttattttatttatacttcatTATGGTCTTCtactttttgttaaaaaagaaattgtcCTGTGGAGGTCAAagttattcattataaaatacatcTGTATTGTTTTCGCAttgtttttgacaaataaaCAGTGATGAAACGGTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232971 lncRNA upstream 307756 13114958 ~ 13115174 (+) True G157329
TU232968 lncRNA upstream 315973 13106460 ~ 13106957 (+) True G157326
TU232954 lncRNA upstream 382518 12989801 ~ 13040412 (+) True G157317
TU232925 lncRNA upstream 569098 12853241 ~ 12853832 (+) True G157294
TU232866 lncRNA upstream 635215 12729044 ~ 12787715 (+) True G157265
TU233091 lncRNA downstream 2408 13438275 ~ 13441951 (+) True G157410
TU233089 lncRNA downstream 57719 13493586 ~ 13495376 (+) True G157408
TU233111 lncRNA downstream 365553 13801420 ~ 13882959 (+) True G157417
TU233118 lncRNA downstream 423098 13858965 ~ 13862206 (+) True G157423
TU233174 lncRNA downstream 461964 13897831 ~ 13901092 (+) True G157459
XM_043225435.1 mRNA upstream 5676 13402017 ~ 13417254 (+) True klhl17
XM_043225436.1 mRNA upstream 5676 13403259 ~ 13417254 (+) False klhl17
XM_043224555.1 mRNA upstream 46629 13321531 ~ 13376301 (+) True samd11
XM_043224556.1 mRNA upstream 46629 13321531 ~ 13376301 (+) False samd11
XM_043224411.1 mRNA upstream 138056 13190793 ~ 13284874 (+) True rerea
XM_043224201.1 mRNA downstream 103086 13538953 ~ 13747172 (+) False agrn
XM_043224202.1 mRNA downstream 103086 13538953 ~ 13747172 (+) False agrn
XM_043224203.1 mRNA downstream 103086 13538953 ~ 13747172 (+) False agrn
XM_043224205.1 mRNA downstream 103086 13538953 ~ 13747172 (+) False agrn
XM_043224204.1 mRNA downstream 103086 13538953 ~ 13747172 (+) False agrn
unassigned_transcript_2622 other upstream 1904394 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 1907059 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 1909084 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 1910232 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2245897 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 618497 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 620818 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 863834 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 1248123 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 1276280 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile