RNA id: XM_043224812.1


Basic Information

Item Value
RNA id XM_043224812.1
length 3605
RNA type mRNA
GC content 0.44
exon number 21
gene id top1b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1982649 ~ 1996005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTGTTCCCGCGCATGCGCAGTAGCGTCGCAGTCAGACTTTGCTCGACGACCGTCACAGCGTTTAAAACGCCGGCAACTTTATCGTTCGTACAAGCCGATACCTTCCTCGTTAATCGCGTTCTTCGTCTTCAGAGTCTCGACATGAGCGCAGATCACGCACACAGACAGCACCAGATGCAGCCTGGGTCCGAGGACTACaaTTCGCACAAACACAAGGACAAACTTAAAGACCGAGAACACAACCACAAAGAACACAAGAGAGACAAGGAGCGAGAAAACTCGAAGAACAGTGAACACAGAAGCTCTTCTGAGAAGAAGCAtcgagagaaagaaaaagagcgaCATAAGcacaaagaaaagcaaaaagaagaaaagTTTCATAGTTCTGATGGGAAATATCGAGATAAAGAGAACGGCTTCGTGAGCTCTCTGTCAATTAAAGTGGAAGAGGACAACGGATATCATCACCCCATCAAACACGAGAAACCTCTCAAGAGATTGCGGGATGAAGACGACAGGTATGAACACAAACCTAAAAAGGTAAAAGTGGAGAATGAGAAGAAAGTGAAAAAACGCAAACAGGAGGACAGCGATTACGAGGAGAGGGAGgaaaagaaaccaaagaaGAAGACCAAAGAGCTAAAGAAGGACTCTGCTGGAGGGAAGAAGAAAGCCAAAACCGAGCCAGAGGAGAAGTGGAAATGGTGGGAAGAGGAGAAATACACAGATGGCTCCAAATGGAGGTTTCTGGAGCATAAAGGGCCCGTTTTTCCCCCTCCGTATGAACCCCTGCCAGACCATATCAGGATTTGTTATGATGGAAAGCCCATGAAACTGAGTCCTGGTGCAGAGGAAGTGGCCACgttttatgcaaaaatgctCGACCATGAGTACACAACTAAAGACATATTCAGAAAGAACTTCTTCAAAGATTGGAGGAAGGAAATGACGTCGGAGGAGAAGTCAAAGATCACGGAGCTGAAGAAATGCGACTTCACTGAGATGCACGAGTACTTTAAAGCACAATCCGAGGCCAGAAAACAGATGTCAAAAGAGGAGAAACAGAAAATCAAAGAAGAGAACGAGCGCATTCTGCAGGAGTATGGATACTGTGTCATGGACAATCACAGGGAGCGGATCGGGAACTTCCGGATCGAGCCGCCGGGTCTGTTTCGTGGTCGTGGAGATCATCCTAAGATGGGCAAGCTAAAGCGGCGCATCCGCCCCGAGGACATCATCATCAACTGCAGCAAAGATTCGGTTCACCCTAAAGCGCCTCCGGGCGCCAGGTGGAAGGAGGTTCGTCATGATAATAAAGTCACGTGGCTGGTGTCGTGGACGGAGAACATTCAGGGCTCCATCAAATACATCATGCTCAACCCCAGCTCCAGAATCAAGGGGGAGAAGGACTGGCAGAAGTACGAGACGGCGCGGCGGCTGAAGAAGAGCGTGGGCCACATCCGAGCGCAGTACCGTGAGGACTGGAGGAGTAAAGAGATGCGGATCAGGCAGAGAGCCGTCGCCCTCTACTTCATTGACAAGcTGGCTCTGAGGGCCGGTAATGAGAAGGACGAGGGGGAGACGGCAGACACGGTGGGCTGCTGCTCTCTGCGCGTGGAGCACATCAGACTGCACCCTCAGATGGACGGACAGGACTTCGTGGTGGAGCTGGACTTCCCGGGAAAAGACTCCATCCGTTACTACAACAAAGTCCCCGTGGAGAAAAGAgtATTTAAAAACCTTCAGTTGTTCCTTGATAACAAGCAGGGAAAAGATGATCTGTTTGACCGACTCAATACATCGATTCTAAATAAACACCTCCAGGAGTTGATGGATGGCTTGACGGCGAAAGTGTTTCGCACTTACAACGCATCCATTACCCTCCAGCAGCAGCTCAAAGAGCTGACCAGCCCTGAAGATAACATCCCCGAGAAGATCCTCTCGTATAACAGGGCGAACCGAGCTGTGGCTGTTCTCTGCAACCACCAGAGGGCGCCGCCAAAAACCTTTGAGAAATCCATGCACAATTTACAGACCAAGATAGATGAGAAGAAGAAACAGCTCTCTGCTGCCAAGAAGGAGCTTAAAGCGGCCAAAGCTGACGCCAAGACGCTCCGCGATgagaaaagtaaaaaGGCGGTGGAGACGAAGAAGAAGGCAGTGCAGAGGATATCCGAGCAGCTGATGAAGCTGGAGGTCCAGGCCACAGATCGTGAGGAGAATAAGCAGATTGCATTAGGAACATCTAAACTCAACTACCTGGACCCACGAATCTCAGTGGCTTGGTGCAAAAAATGGGGAGTTCCCATTGAGAAGATCTACAACAAAACGCAGCGGGAAAAGTTTGCCTGGGCTATCGACATGACAGAGGAGGACTTCGAGTTTtaaagcttttcattttattgttgttatttggATCAGATGCTTATCGAGAACATTAAGCGCGaggtaatgtaaaaaaaaaaataatacatacagaGCAAGCCAGTAGTTGCTTTCTGAAAACAGGAGAGGGCCTGAAACCGAGCCTTGGTGAACACCATGTCTTTATTTAAGAACGTTTTCGTTGTTTCATATCATTCTGTGATAGCATCCTTTGGTTTTAGCATTCAGATTAATTgatgaatttttatatttttaaaattatgaaataccGCAATccttaaataaaattaaaatgataaactgTGTATAAAATCGAGTTGAAGATATAAGGAAAGGCGATCAGAGGTACCAGTGTGTGAATATCTGTTTTTAGTTTGAATGTTTCTATCAGGGATGtacctttcattttttttaatgtatgcaaagaaaaaccgCTTCACCGAaagaatatgattttaaatttagCCAATATTACTGTGCGTCCTTTTAGAattagcctgtttttttttaattatgaaatgtCATTTCTGCGCATATTTACGGTGATATAAGTTCCTCATGAACACCACTGTAtatgaaagcttgtttattcCAGTTGGAAACTCCTTAAATCTATGAAtccatgaataaaaaaaagtccacTAAGACCTTTTAGAAATCTTATCAGCTGGCTAATGaactttttaatttgaagtCTCCTAAGGTTCTGCTTTTTAAGAGCGCAGGAACGAAAAGCAGCTAGGCTTCTTGACATTTTATCCATTTTTCATCGAATTCATAGcacgttttgttttataaaacataaaaaaaaaaagaaaaaatatttttataccatCGGAGGATGAGGCCCTTTCCGTGAGAcactatttgtatttttaactgGCTGTAAATGACACTGAAATGGTAACCGACTAGAGCACAGACATTGttgtaaatgttatattaaagatAGTTCTGTCTTTTATCATGCGCTGTAACAATGTAAGCTTCGGTGTTGGTTTTGCTCTGCATTAGTGTGCTAGGACGTTATCGGCTTACATAGTCCTTTTGTGAAGGTTATGTGTAATTATCCACGGTTTAGCTCTTGGTGTAAGTAAGCCACGTTTCGTTTAAGATCGATTTTTAAGGATTTATATAGACATTGTTAACGGTGACTGAGAAATGCACGTGTCGTTTTCATGATGTTGTACGCTGAAATCTATAAAAGCTTCATCTGAA

Function

GO: NA

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228138 lncRNA downstream 173644 1808555 ~ 1809005 (-) True G154077
TU228125 lncRNA downstream 266678 1715243 ~ 1715971 (-) True G154064
TU228122 lncRNA downstream 270607 1711732 ~ 1712042 (-) True G154061
TU228119 lncRNA downstream 275194 1707139 ~ 1707455 (-) True G154058
TU228118 lncRNA downstream 276054 1706275 ~ 1706595 (-) True G154057
TU228319 lncRNA upstream 50318 2046323 ~ 2046544 (-) True G154188
TU228325 lncRNA upstream 81559 2077564 ~ 2079496 (-) True G154194
TU228327 lncRNA upstream 96743 2092748 ~ 2095915 (-) True G154195
TU228334 lncRNA upstream 100779 2096784 ~ 2097008 (-) True G154200
XR_006247848.1 lncRNA upstream 103249 2099254 ~ 2102158 (-) False LOC122328884
XM_043224810.1 mRNA downstream 1684 1952150 ~ 1980965 (-) False plcg1
XM_043224809.1 mRNA downstream 1684 1952150 ~ 1980965 (-) True plcg1
XM_043224808.1 mRNA downstream 1686 1952150 ~ 1980963 (-) False plcg1
XM_043225481.1 mRNA downstream 43259 1936124 ~ 1939390 (-) True rab5if
XM_043225328.1 mRNA downstream 47811 1923187 ~ 1934838 (-) True dhx35
XM_043225363.1 mRNA upstream 2694 1998699 ~ 2003597 (-) True zgc:114123
XM_043224386.1 mRNA upstream 8326 2004331 ~ 2017858 (-) False ncoa6
XM_043224389.1 mRNA upstream 8326 2004331 ~ 2017858 (-) False ncoa6
XM_043224388.1 mRNA upstream 8326 2004331 ~ 2017858 (-) False ncoa6
XM_043224387.1 mRNA upstream 8326 2004331 ~ 2017858 (-) False ncoa6
TU228042 other downstream 470320 1507810 ~ 1512329 (-) False smim29
TU228038 other downstream 470358 1507698 ~ 1512291 (-) True smim29
TU228039 other downstream 470358 1507810 ~ 1512291 (-) False smim29
TU228037 other downstream 470358 1507885 ~ 1512291 (-) False smim29
TU228040 other downstream 470358 1507885 ~ 1512291 (-) False smim29
XR_006247837.1 other upstream 106705 2102710 ~ 2116883 (-) False LOC122328833
XR_006247839.1 other upstream 775402 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 791291 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 929043 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 929524 2925529 ~ 2951628 (-) True G154445

Expression Profile