RNA id: XR_006247837.1


Basic Information

Item Value
RNA id XR_006247837.1
length 3873
RNA type transcript
GC content 0.42
exon number 16
gene id LOC122328833
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2102710 ~ 2116883 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTGACTGACTGAACGATAACAAACCACCTTTAAGTAATTTGATACGATAAGCAGCTTCCAAATGCTCTTGTGACAAGTGAGAAGCACACAtgcTACAGTATGGCTGCCAAAAGAAGTTTCTTTGGGGAACACCTAAACACACCCGTTGTCAATAGACTAGTTCAGGGTGAATCTCCTGAGCCCAGTTGTGTGTCGATGAAGAGTGATGAGTCAAAGGGCACACCAATTAACTTTAGGGAATCGTCTGCTGATGTCAGTACTCAGGGTGAATCTCCTGAGCCCAGCTGTGTGTCCATGAAGAGTGATGAGTCAAAGGGCACACCAGTTAACTTTAGGGAATCTTCTGCTGATGTCAGTAACAAACAGGATGGGTCAGTTTTgcttgaaaagaaaaagttggACTCCATTTTTAAGGAGCTTAAGCCCAAAATGATCTCTCTGATGAAAAAAGAGCTGAAAATATTCAAGAAATTACTGAGTCCAGATTACCCAGTGTGCTCTGAGAAAGAGTGGGACAATGATGATAAAGGTCAGGACAGATTGAGAAGGGGGATTCTGAAAATAACACTGCACATCCTGAGGCAGATGAACCAGGCAGACCTCGCAAACACATTACAGACCAAATGTGCCCCTGTATGCCAACAAAAACTTAAATCCAAACTTAAAGACAAATTTCAGAGAATTAATGAAGGGATCTTCCATCAAATTAACTCAACACTTCTTAATGAGGTCTACACTGAGCTCTACATCACAGAAGGAGGGATTAGTGAAGTTAATAATGAGCATGAGGTGAGACAGATTGAGACAGCATTTAGGAGACCAGAGACACCAGAAACACTAATCAAATGCAATGACATCTTTAAAGCCTTACCTGGACAAGATAAATCTGTCAGAACCATGCTGACTCAAGGAGTTgctggaattggaaaaactGTGTCTGTGCATAAATTTATTCTGGATTGGGCAGAAGGAAAAGACAATCAGGATGTCCACTTcatatttccacttcctttcagGGAGCTCAATTTGATGAAGGAGAAATATATCAGTTTTATGGAGcttcttcatcttttttttaaagatgccaAAGAACTGACATCAACAGACTATGAGGATTACAAGattgtgttcatatttgatGGAATGGATGAATGTCGACTTCctttaaatttgacaaaaaaccCAAACCTATTTGATATAACAGAACCGGCCTCGGTGGATGTGCTGCTGACGAACCTGATCAAGGGGAATCTTCTTCCTTCAGCTCTCCTCTGGATCACCTCtcgaccagcagcagccaatcagatccctccTGAGTGTGTTGACCAGGTCACAGAAGTGCGAGGATTCAATGACCCTCAGAAAGATGAATATTTCATGAAGAGAATAAGTGATCAAAGTCTGGCCAGTAGAATCATCACACACATCAAATCATCAAGGAGTTTatacatcatgtgccacatcccagtcttctgctggatttCAGCCACTGTTCTACAGAGTATGTTATGTGAAGCAGAGAGTGCAGAGATCCCCAAGACACTCACTCAAATGTTCACACACTTCCTGATCTATCAGATCAAACTGAAGACacaaaagtatgaaaataaatatgaagtaaatCCTCAGCTAACTCTATCACTAGGAAAGTTAGCTTTTGAACAACTAGAAAAAGGGAACCTGATCTTCTATGAGGAGGATTTGAGAGACTGTGGAATTGACGCCAGAGAAGCATCAGTATACTCTGGAATTTGCACTCAAATCTTCAGAGAGGAGTTTGAATTTTACCTGGGAAAGGTGTACAGCTTTGTTCACCTGAGCGTTCAGGAGTTTCTTGCTGCTCTATTCAAGCTCATTTCCTGTATTGAGAACAAAGAACACAGCTCAAAAATTACTGAGTTTCTAAAGAGTGAAGTGAACCGGGCCTTACAGAGTGAGAGTGGACACCTGGATCTTTTCATCCGATTCCTTCTGGGTCTCTCATCTGTTTCCAGTAAGGTGCTTCTGCGGGGCTTGTTGGCACAAACAGACAGCATGTCCTCCAGCCAAGAGGAAATAGTTGAGTACATTAAGATGAAAATCAGGGAGAATTCCTCTCCAGAGAAATCCATCAATCTATTccactgtctgaatgaactgaatGATCATTCATTAGTGCAGGAAGTCCAGACATACTTGAGCAAAACAGGTGCAAGTCGTCTGACCGAAGCCAGACTCACGTCTTCTCAGTGGTCAGCTCTGGTGTTTGTATTGCTAAATTCAGATGATGACTTGGATGAGTTTAATCTAAGCAAATTTGATCCATCAGAGGAATGTCTTCTAAAGCTACTGCCAGTAGTGAAAACATCTAGAAAAGCAGATCTGAGTGGATGTGGTCTCACAGAAAAAAGCTGTTTGGCACTGGCCTCAGCTCTTAGCTCAAGCTCCACAAGTCTGAGAGAGCTGAACCTGAGTGACAACAACCTAGAAGATTCAGGACAGAAGCACCTTTCTACTGGACTAAAGAATCCTCAATGTAAACTGGAGACATTAAAGTTGTCTAGGTGCCTAATTAGAGAGGAAGGTTGTGCTGCCCTGGCCTTAGCTCTGAGATTAAACCCTTCTCATCTGAGAGAACTGGATCTGAACTGGAATAAACCAGGAGACTCAGGAGTTAAGCTTCTCTCCGTTGTACTGAAAGACCCACAATGTAAACTGGAGAGGCtaaaATTGAGGGACTGTAATATTGGAGAGGAAGGCTGTACTGCTTTGGCTTCAGCTTTAAGAttaaacccctcacacctgagggAACTCagtttaaactataataaaccAGGATGTTCAGGAATTAAGCAGCTTTCTGCTCTTCTAAGGGACCTTGATTGTAAATTGATGAAATTACAGCTGTTTGACTGCAGCATTGGAGAGGACGATTGTGCTGCTTTGATTTCAGCTCTAAGATCAAATccatcacacctgagagaactgacTCTAAACTACAATGAACTAGGGGAGTCAGGAGTAAAGATGCTCTCTAATCTACTGAAGGATCAGGGCTGTAAACTGGAGAAACTCAAGCTGTGCGATTGCAACATTACAGAGAAAGGATTTGctgctctggcttcagctctgaaatcaaacccatcacacaTGAAAAAGTTGGTTTTGAGCTGTAATAAACTAGGGGATTCAGGAATTAAGCTGCTCTCTGCTCTGCTGAGGAATCCTAACTGTAACCTCGAGAAGCTCAGGCTTTGGAAATGCAGACTTGGCGAGCAAGGCTGTGCCGCTCTGACTTCAGCTCTAAGaacaaacccctcacacctgagagaactgaatctaaataataatcatcTAGGAGATTTAGCAGTGAAGCAACTCTCTGGTCTATTGCAGGATCCACATTGTAAACTAGAGAAATTACTGCTGTCTGAATGCAGTATTGGAGAAAAAGCTTGTGTTACTCTGATTTCAGCTCTGATGTCAAACCCTTCACATATTAGAGCACTCAATTTGAGCAACAATGAACTAGGACACTCAGGAGTAAAGCAGATTTCTGATCTACTGCAGAATCCACAATGTAAACTGGAGAAACTGAGgTTTGTAATTGCAGTATCACAGAGGAAGACTGCAGTTCCCTTGCTTCAACTCTGAGATCGCACTTAAAACACCTCAATCTCAGTAAGAACAAACTAGGAGATTTTGGAGTGATGCAGCTCTATGCTCTACAAAATGATCCACAGTGTAAACTACAATGCTTCAACTGGTAGATAAACTTGGAGGTCGATGTCCTTGACAAATATGAAGTTATTCTAACTGCTTCAAACACAAGGATTAGGATTTACGGCTAAACTTTTTGTCTGCCCAGGATAGTCTTAGACAACCAggtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247848.1 lncRNA downstream 552 2099254 ~ 2102158 (-) False LOC122328884
XR_006247849.1 lncRNA downstream 581 2101524 ~ 2102129 (-) True LOC122328884
TU228334 lncRNA downstream 5702 2096784 ~ 2097008 (-) True G154200
TU228327 lncRNA downstream 6795 2092748 ~ 2095915 (-) True G154195
TU228325 lncRNA downstream 23214 2077564 ~ 2079496 (-) True G154194
TU228403 lncRNA upstream 171384 2288267 ~ 2288503 (-) True G154245
TU228405 lncRNA upstream 183372 2300255 ~ 2300566 (-) True G154246
TU228409 lncRNA upstream 184727 2301610 ~ 2304195 (-) False G154247
TU228410 lncRNA upstream 184727 2301610 ~ 2304408 (-) True G154247
TU228406 lncRNA upstream 184974 2301857 ~ 2304408 (-) False G154247
XM_043224082.1 mRNA downstream 64374 2029050 ~ 2038336 (-) False LOC122328403
XM_043224081.1 mRNA downstream 64376 2029050 ~ 2038334 (-) False LOC122328403
XM_043224080.1 mRNA downstream 64376 2029050 ~ 2038334 (-) True LOC122328403
XM_043224083.1 mRNA downstream 64379 2029050 ~ 2038331 (-) False LOC122328403
XM_043224079.1 mRNA downstream 74211 2018370 ~ 2028499 (-) False LOC122328402
XM_043224914.1 mRNA upstream 16153 2133036 ~ 2139275 (-) True tcp1
XM_043224826.1 mRNA upstream 23949 2140832 ~ 2182009 (-) False LOC122328830
XM_043224825.1 mRNA upstream 23949 2140832 ~ 2176802 (-) True LOC122328830
XM_043224822.1 mRNA upstream 97505 2214388 ~ 2233588 (-) False cc2d2a
XM_043224821.1 mRNA upstream 97505 2214388 ~ 2233588 (-) False cc2d2a
TU228042 other downstream 590381 1507810 ~ 1512329 (-) False smim29
TU228038 other downstream 590419 1507698 ~ 1512291 (-) True smim29
TU228039 other downstream 590419 1507810 ~ 1512291 (-) False smim29
TU228037 other downstream 590419 1507885 ~ 1512291 (-) False smim29
TU228040 other downstream 590419 1507885 ~ 1512291 (-) False smim29
XR_006247839.1 other upstream 654524 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 670413 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 808165 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 808646 2925529 ~ 2951628 (-) True G154445
TU228726 other upstream 808646 2925529 ~ 2942569 (-) False G154445

Expression Profile