RNA id: XM_043224842.1


Basic Information

Item Value
RNA id XM_043224842.1
length 4045
RNA type mRNA
GC content 0.58
exon number 25
gene id LOC122328834
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3352961 ~ 3430053 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAGCGTGCCCGTCGAGGAAGTGACGTGTCGATCCGTGCCAGAGGAAGTTTGCGCGGCGCAGGGAGAGAAGTTTCCCCGGAGCGGATGCGCTTGGAGCGGGAAGAACCCTGACACAGCCGCCGCCGCCGGACCGAGCGCACCGGAGCGGCAAGAGAGCGCGTCGTGCGGCGCGTGGATGCGTGTTGCGGCGTTGGAGAGGCGTGCAGTGGGTTCGTGTGGCCGTGTGATCGTCTCTCCGCCGCTCCTCCCGCTCGCTGCGAGATGGGGAAGGAGCAGGAACTGCTGGAGGCGGCGCGCACCGGGAATCTGGTCGCCGTTGAGAAGCTCCTGTCCGGGAAGAGACAGTCGGTCGGGTCGGCCGCCGCCGGAGGCTCCGGATCAACCGGGAATATTGGGAGCGGCGGGCACAGCTCTTCACACCCGCTCTCCAGTCTGCTCAGcatcTGGAGGGGCCCGAATGTGAACTGTGTGGACAGCACTGGATACACACCTCTACACCACGCTGCTTTAAATGGACACAGtGAGGTGGTGGAAGTACTTCTGCGGAACGAGGCTCTGACGAACATCGCCGATAACAAGGGCTGCTACCCTCTGCACCTGGCGGCGTGGAAGGGAGACCAGCGAATCGTCAAACTCCTCATCCATCAGGGTCCATCTCACCCCAAACTCAATGAACAGAACAACGACAACGAGACGCCGCTGCACTGTGCGGCTCAGTACGGACACACTCAGGTGGTGCAGCTGCTGCTGGAGGAGCTGACCGACCCCACCATGCGCAACAACAAGTTCGAGACGCCGCTGGACCTGGCAGCGCTCTACGGCCGGCTGGAGGTGGTCAAGCTCCTGCTCAGCGCCCATCCCAACCTGCTCAGCTCCAACACCAAGAAACACACCCCTCTCCACCTGGCCTCCCGAAACGGACACCTGCCCGTGGTGGAGGTGCTGCTGGCCGCCGGCGTGGACATCAACTACCAGACGGAGAAAGGCAGCGCCCTTCATGAAGCGGCTCTGTTCGGAAAGACGGAAGTAGTGCAAAAGCTACTCAACGCAGGTATCGACGTGAATATCGTGGACGGTAAGAATCTAACGGCGCTGGACACTGTTAGAGACATGCCCTCTCAGAAGAGCCGACAGATCGCCGCTCTCATACAAGCTCACATGAGCGGCCGGCCGTCAGACTCCGGCCTCCCTCCTCCGCCGGTGCCTCCACCTCAAGAGAGCCTGAGCCCCAAGAGAAAAGGAGACATGGAGCAGCAGGTCACTGAGCTCATATCTGGTTTGGCTGCGACGCCTGTGGAAGAGAGTCCGTATGAAGCCCTGTTCGAGGCGTCCTCCTGTGTGTCTCTGGACAGCCTGGCCAGCGGAAAGTCATCGGACAGAGACTCGGGACGACCCGACAGCGAAGCCgggaagAAAGAGCGACATCCTCCACAGAGTCAGGACGAGGATCTCAGCTCTGAGGCGGTTTACACCAACAGCAGCGTGGACGAGCGGCCCGAGCCTCTGGAAGAGGAAGACCACACGTACGAGCTCTTAGTCACCGCGCAGACCAAAATCCCCAACAACGCGCAAGGCAGAACGGATGCGGACGTCTCAGGCAAGTCTTCCAACAGTGTCCTACCTCAGcgaAAGACCACTGCACACATTGACCTACGACCTTCAGGGTCCAACACAAACAGTCTGCTGCCGCCTGCGCCTCATTTTAGCCCCGGACAGACGTCTGGAGAGAGCTCCTCACACGGTCAGGATACAGGCGCTGCCGTTCCTGAGCAGTTCACTGGTCTGCTTCACGGTTCCTCGCCGGTGGTCGACTGTCGGGAGGAAGCTTTCAGACTGCCGTCCTCTGGAGTGAAGTCCGGCGAGGCTTCCAACACTTCGACATCCGCCAGCTCCGCCCCCCTTGCCCACCCCAAATCGTCGGTCGCCATGGAAACCATTCTCCAGGACACTGACCCCAAAGCTATCTATGCCACGGTCCACAAAGAGCCGCGGGATTCATCAAAACACAGCTCACCGGCTCGTGATTCTCCGCTGACGAGAAGGATGCCTCCACCGGGCGATCTCAAGCTAGCGCGAAGCCTTTCGAAGTCCGACTCCGACCTGCTAGTGTCCCCACCCGGTGAGGAAGAGACGGGGCTGGGCGGCCGAAGTGAATCAGTGTCCAACTGTAGCACCACCAAGAGAAGACTGGAAAAATCACCTTCGTTCACTTCAGAATGGGACGAGATTGAGAAGATCATGACCCTAATTGGAGCAGGCATCGACTTCTCCAAAGACCAGGAGTGCCCTGCCACAGGTGGATCCGGGAGGCTCCTTGAACAGCCGGTCGGGGATTGGTTGGAGCATATAGGCCTTCCCCAGTATGAGAGCAAGCTGCTGCTCAATGGCTTCGACGACCTGCGCTTCATGGGAAATGACGTGATGGAAGAGCAGGACCTGAGAGAAATTGGCATCACGGACCCGGCGCATCGCAGGAAGATCCTCAGCGCCGCACGTTCTCTACCAAAGGTGAAAGCGCTAGGCTGCGACGGCAGCACGTCCCTCGCCGCGTGGCTGGATGTCCTGGGTCTCCAGGAATACCTGCAGAACTTCCTGTCCAGTGGCTATCGCACGCTCGAGTGTGTGAAGAACCTGTGGGAGCTGGAGATCGTCAACGTGTTGAAGATCACGTTGTTGGGCCACAGGAAAAGGATTATTGCGTCATTAGCTGAACGTCCGTACGAGGAGCCTCCGGTCAAACCACCCCGGCTCTCTCAGATCAGATGTCAGGATCTGATGTCCCAGACCTCATCTCCTCTCAGTCACTCAGACTCCTACACGCGCTCCATGGACCCCCTGTTACCTGCAGGCGATTCTGGGAGGAGGAGAGCTCCAGACTCTGAGTACGACGTGGCTATTCGACAGCGGCCCAACGAAAGACCACAAGAGAGATTTGAGGAGCGCCAGAGGGAACCCCGCTTGACCTTACGACCCCCGAGTCTGGCGGCACCGTACACACCGGTCCAGAACTGGCACCATCAGCCCGAGAAGCTCATCTTTGAGTCGTGCGGTTACGAGGCCAACTATCTGGGCTCAATGCTCATTAAAGAACTAAGAGGAACGGAGTCGACGCAGGACGCCTGTGCTAAAATGAGGaggTCGACGGAGCAGATGAGGAAGATCCCCACCATCATCCTCTCCATCACGTACAAGGGTGTGAAATTCATTGACGCTGCCAACAAGAACATCATCGCAGAACATGAGATCAGGAACATCTCCTGTGCAGCTCAGGACCCGGAGGACCTCTGCACGTTTGCTTACATCACTAAAGATCTTCAGAGCAGCCACCATTACTGCCATGTCTTCAGCACCGTAGATGTGAACCTGACCTATGAGATCATTCTGACGCTGGGACAGGCGTTTGAAGTGGCCTATCAGCTGGCACTACAGGCCCAGAGGACCAGACAGCAGCAGAGCACAGCGGGACCCACCGAGATCATCGAGACCAAGAGCAGCAGACCCGTCCCCAAACCACGAGGGAGCATGCGCAAGTCAGGGGTGGAGGCCATGGATGTGGAGGCTCACGCTCAGAGCAGCGCCACCTGGATCCTGGACTCCAAAGACCCCAAGCGCACCGTCAGCACCAAGTACGAGACCACCATATTCTGATCGGACGCCCCTCACACCTTTTCCTTTCGCTCTGTGCCTTCACTCTCTAGATAGACCTCCCCTCGCTCTCCGTTCACCTCTTTCTGTCCTGAAGCCTAGTTCCGCTCGGGCTGTCCAACAACCCTTTCCCCGAGGCCGAGACAAACACATTTCCCCTTTAAGTCGGTGCGGGTGTTTAGGAGCCCTGTAGTCGTATCATAACTGGCCTGAAACCAAAGTAAAGCTCTGCTGAGGACCAGAACATCTCGTCATTTAACCTTCCTGCTTCAAACGCGAAGAGACTAACATTTCCTTGTCATTCCACTCAAAGGACTCTCCCTCCATCGTCCACGCTGATGGGCTTTCTCTTAACTCtcttaactttctttcttttctccttctGTGGTGCTCGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228845 lncRNA downstream 344564 3011419 ~ 3013181 (-) True G154525
TU228839 lncRNA downstream 348267 3006483 ~ 3009478 (-) True G154519
TU228837 lncRNA downstream 348267 3007921 ~ 3009478 (-) False G154519
TU228838 lncRNA downstream 348267 3007921 ~ 3009478 (-) False G154519
TU228840 lncRNA downstream 359781 2996765 ~ 2997964 (-) True G154520
TU228997 lncRNA upstream 72225 3502275 ~ 3518117 (-) False tspan2b
TU229031 lncRNA upstream 202309 3632359 ~ 3633333 (-) True G154663
TU229039 lncRNA upstream 225236 3655286 ~ 3655596 (-) True G154671
TU229040 lncRNA upstream 226238 3656288 ~ 3656543 (-) True G154672
TU229056 lncRNA upstream 242629 3672679 ~ 3673581 (-) True G154684
XM_043225372.1 mRNA downstream 58790 3288123 ~ 3298955 (-) True LOC122329174
XM_043224859.1 mRNA downstream 151335 3142283 ~ 3206410 (-) False hdac7a
XM_043224844.1 mRNA upstream 4074 3434124 ~ 3445955 (-) False LOC122328836
XM_043224843.1 mRNA upstream 4074 3434124 ~ 3445954 (-) True LOC122328836
XM_043224847.1 mRNA upstream 4074 3434124 ~ 3445523 (-) False LOC122328836
XM_043224846.1 mRNA upstream 4074 3434124 ~ 3445502 (-) False LOC122328836
XM_043224848.1 mRNA upstream 6146 3436196 ~ 3445960 (-) False LOC122328836
TU228731 other downstream 400473 2925048 ~ 2957272 (-) True G154446
TU228725 other downstream 406117 2925529 ~ 2951628 (-) True G154445
TU228728 other downstream 406117 2942238 ~ 2951628 (-) False G154445
TU228726 other downstream 415176 2925529 ~ 2942569 (-) False G154445
XR_006247842.1 other downstream 559212 2787296 ~ 2798533 (-) True LOC122328849
XR_006247838.1 other upstream 6729 3436779 ~ 3445964 (-) False LOC122328836
XR_006247897.1 other upstream 464916 3894966 ~ 3905892 (-) False lad1
XR_006247892.1 other upstream 743864 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 743864 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 1401768 4831818 ~ 4834520 (-) False LOC122329181

Expression Profile