RNA id: XM_043224847.1


Basic Information

Item Value
RNA id XM_043224847.1
length 4416
RNA type mRNA
GC content 0.40
exon number 14
gene id LOC122328836
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3434124 ~ 3445964 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaagtaaaactGGTAAAGCAAGAAGAACTTCCTTTGGGGAATTACTCGAGAAGAAGATAAATACAGTGAGTATCACAGCTTGGACTTACACTCTGtctgaaaaaagagagaacgaAATCAGTTGAAGGGCCAGCTGTGTGTCCATGAAGAGTGAAGAATCAGTTGACAAACCaacaaacttttttgttgtCATGAGtaaatctAAACCCAGCTGTGTGTCAGTGAAGAGTGACCAGTCCGTGGATGAACCAACAAACTTTAGGTCAGGAGACTCTGCTCTGAGTCAGTTTCCAAAACCCAGCTGTGTGTCCATTAAGAGTGACCAGTCCGTGGATGAACCAACAAACTTCAGTTCAGGAGACTCCTCTGCTGTTGTGGGACATTTACCAGAAAATGTCCTTCCAACCACTAGAAAGCAGTTGGACTCTATTTTTAAGGAGCTTGAGCACAAAAGCATTTCTCTCATGAAGAAAGAACTAAAGATGTTCAAGAAACTGCTGAGTCCGGATTACCCAGAATGCTCTGCAagcgaggaggaggagcaggaggaggaggttgGTCAGAACCAAGTCAGAGAAGGGACTCTGAAGATCACACTGCATGTCCTGAGGAAGATGAACCAGACAGAACTTGCCAACAATCTACATATAAAACATGCCCCCTTTTGTATGAAAAAGCACAAATCCAGATTAAAAAGACAGTTTCAGAGAATCAGTGAAGGAATGTCAAATAAAGGAAACTCAAGACCTCTGCGTGAGATATATACAGAGCTGTATGTCACAGAGGGAGAGGGTGAAGAGGTCAATAATGAACATGAGGTGAGACAGATTGAGATGGAATCCAGGAGACCAGGGACACTGGAAACAAGAATCGAATGCAATGACATCTTTAGATCCTCACCTGGACAAAACAAGTCCATCAGAACTGTGATGACTAAAGGAATTGCTGGAATAGGAAAAACCGTCTCagtgcagaagttcattctggaTTGGGCTGAAGGAAGGGCAAATCGGGATGTTCATTTCATATTTCCACTTCCATTCAGAGAGCTCAATTTGATGATGGAGAATAATATTACCCTGATGGAGCTTCTTTATCAGTTTTTCAATTATACAAAAGAACTCAGCAAAAAAGATTTTGATGACTTCAAAGTCCTTTTTATCTTTGATGGTTTGGACGAGTGTCAACTTCCTCTAGATTTCTGGAACAATGATGTATTGTGTGATATGACAGAATCAGCCTCAGTGGATGTTCTCCTGACGAACCTGATCAAGGGGAATCTGCTTCCTTCAGCTCTCCTCTGGATCACCTCTcgaccagcagcagccagtcAGATCCCTCCTGAGTGTGTTGACCAGGTCACAGAAGTGCGAGGATTCAACGACCCTCAGAAAGATGAATATTTCATGAAGAGAATAAGTGATCAGAGTCTGGCCAGTAGAATCATCACACACATCAAATCATCAAGGAGTTTatacatcatgtgccacatcccagtcttctgctggatttCGGCCACCGTTTTAGAGAGAGTGTTGAGTGAAGCAGAGAATGCAGAGATTCCCAAGACTCTCACTCAAATGTTCACATACTTCCTGGCTTATCAGATCAAACTGAAGACCCAGAAATATGATGGGAAATATGAGGTGGATCTTCAGCAGGCCAAGAAGAACATCTTTTCACTGGGAAAACTGGCTTTTGAACAACTGGAAAAGGGGAACCTAATCTTCTATGAGGAGGATCTGAGGCAATGTGGCGTTGATGTCACAGAAGCATCCGTTTACTCAGGACTCTGCACCCAGATCTTTAGAGAGGAGCTTGGGCAGTACCTAGGGAAGGTGTACAGCTTTGTTCATCTGAGCTTTCAAGAGTTTCTTGCTGCTTTATTCAacctactttttatttttcaagataATGAAACTAAACGTAGCATCACAGATTTATTGAAGAGTGAAATAGACAAGGCCTTACAGAGTAAGAATGGGCACTGGGACCTTTACCTCCGCTTCCTTCTGGGTCTCTTACTGGAGTCAAGTCAGACTCCCTTACAAGTCCTCCTGACACAGACAGGAAGTAGATCTGACAGCAAACAGGAAATAGTTAATTACATTAAGATGAAGCTCAAGGAGGACCCATCTCCAGAGAAATCCATTAATCTGTTTTACTGtctgaatgaaatgaatgatcAATCACTAGTAAAGGAAGTTCAAAAATACCTGAGCAGAAGTGTCCATTGTCTCTCTGGAGCCAAACTCTGTCCTGCTCAATGGTCGGCTCTGGTGTTTGTGTTGCTAAACTCAGAAAACGATCATTTTAAACTGAGTAAATTTTGCAAATCAGAAGAAGGTCTTCTGAGGCTGATGCCAGTTGTCAAGGCATCCAGATATGCTGATCTAAGTGATTGTAATCTGACCGAGAAGAGCTGTTCAGCACTGGCCTTGGCTCTTAAATCAAGCTCGTCATGTCTAAGAGGTCTGGAACTGAATTACAACAACATGCAAGGTTCAAGACTGAATCTGCTCTCTGATGGTCTAAAGAATCCACATTGTAAACTGGAGACACTAAAGTTGTATAACTGTAATATCACAGGGGAAGGTTTTGCCACTCTGACtgcagctctgagatcaaacccctcacacctgagagagctgatTTTAAGCTGGAATACACTAGAAGACTCAGGAATGAAGTTGTTCTCTGATCTACTGCAGGATCCACACTGTAAATTGGAAAAACTACAATTGTCTCACTGCAATATTGGAGAGGAAGGTTGTGCTTCTCTGgtttcagctctgagatcaaacccctcacacctgagagaactgaatCTGAACAATAATACTCTTGGAGACTCAGGAGTGAATCTGCTTTCTAATCTACTGAAGGATCAGCATTGTAAACTAGCGAATCTGCAACTGGAATTTTGCAGCTTTGGAGAGGAAGGCAGTGCTTCTTTGGcatcagctctgagatcaaacccctcacacctgagagaactgaacCTGAGTGAGAATAAACTAGGAGATTCAGGAGTGGAATTGCTCTCCAATCTACTGAATGATCCACACTGTAAACTGGAAAGACTATATCTGTGTTGCTGCAGTATTAGTGAGAAGGGATGTGATGCTCTAATCGCAGCTCTGAGCTCAAATCcttcacacctgagagaactgaatCTGAGCAGAAACAATACAGGAGATTCAGCAGTGAATCTGCTCTCTGATCTACTGAAGGATCCAAACTGTAAACTGGAGAAACTGCAGCTGGAATTCTGCTGTATTGGAGAagaaggttgtgctgctctggTTTCAGCTAAGAGGTCTAAGAAAACACACCTGAAAGAACTAAATCTGAACTATAATAAAATAGGTGATTCTGGAATAAAGCTGAATTCTGGTCTACAAATGGATCCACACTGTAAGATAGAAAAACTACCtacTGACTCTCTCCTGAAGCTATCTACAAATGACAAACGAAAACCAAAACAACACTGCTATCTGTCATAAACAGGAAAAGCTAATGCTCCCTgatatttagttaatttattgGCCATTTAATGGGTGTAAGGAACATACACTTGTTACACTGTCTTAAGGTAGGAGGTGTATTTTCTAAAGGTCAGTCCCGAAGGCCAGGATCAGGAGAtgtaattcatatttacatGAAGTCATATTTAGAAAGTAATCATCAAGTGTGAACTTACATGATGGATGCTAAATACTTTTGATGATGAGGACTTGACAGGATAGGCTTCTCCTAAACCTCTTTTTAGAACCCATCAGGTCTTGGTAAATAATGTTGGTAAACAAATTTAGCTTGCTTTAGTACAAGTAAGGGACAGAGAGGTTTAAAAAATAgagatggaaaagaaaaaactacTGTGCAaggtgaaagagaaagagaaatagcGCCGCTGCAGTAATGGTAgtgatcacatttttttttattttaagcatttattaagTTAAATGATATGCATGTTACTTATCTAACTTATTATTTGAACCTGTGTAcagttaaaatacagaaatgtgcaATAGTAAATAGACTTGATAAAAACACTGTGTGTGATACTTAAATAGCTTAGTGACACCCAacactaaaatgatttaattaatcaaacaaGAGTTTTAACATAAAGCCCTAATGTACAGAACAGATGAGGGaaaaaatgttgtaaattatactgtaaattagttttatttttttttttactgccaaAACTACTTTAAGCTGTATGTTTGATATAAACAGAAACTGTACAATTACATCAATgcatgcaaatacatttaactaatacatttattttagaactGTATGCTCTTCTGGTACATCATTTCAGGTGTATGTAACcttgaaaatgttaataatctgtttaaaatgtaataaagcaaAGAAATTATAACATCACAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228845 lncRNA downstream 420943 3011419 ~ 3013181 (-) True G154525
TU228839 lncRNA downstream 424646 3006483 ~ 3009478 (-) True G154519
TU228837 lncRNA downstream 424646 3007921 ~ 3009478 (-) False G154519
TU228838 lncRNA downstream 424646 3007921 ~ 3009478 (-) False G154519
TU228840 lncRNA downstream 436160 2996765 ~ 2997964 (-) True G154520
TU228997 lncRNA upstream 56752 3502275 ~ 3518117 (-) False tspan2b
TU229031 lncRNA upstream 186836 3632359 ~ 3633333 (-) True G154663
TU229039 lncRNA upstream 209763 3655286 ~ 3655596 (-) True G154671
TU229040 lncRNA upstream 210765 3656288 ~ 3656543 (-) True G154672
TU229056 lncRNA upstream 227156 3672679 ~ 3673581 (-) True G154684
XM_043224838.1 mRNA downstream 4071 3354665 ~ 3430053 (-) True LOC122328834
XM_043224837.1 mRNA downstream 4071 3357745 ~ 3430053 (-) False LOC122328834
XM_043224839.1 mRNA downstream 4072 3352961 ~ 3430052 (-) False LOC122328834
XM_043224841.1 mRNA downstream 4072 3357745 ~ 3430052 (-) False LOC122328834
XM_043224840.1 mRNA downstream 4072 3357745 ~ 3430052 (-) False LOC122328834
XM_043224731.1 mRNA upstream 2036 3447559 ~ 3473454 (-) False uhrf1bp1
XM_043224732.1 mRNA upstream 2036 3447559 ~ 3473454 (-) False uhrf1bp1
XM_043224730.1 mRNA upstream 2036 3447559 ~ 3473454 (-) False uhrf1bp1
XM_043224729.1 mRNA upstream 2036 3447559 ~ 3473454 (-) True uhrf1bp1
XM_043225298.1 mRNA upstream 56742 3502265 ~ 3518142 (-) True tspan2b
TU228731 other downstream 476852 2925048 ~ 2957272 (-) True G154446
TU228725 other downstream 482496 2925529 ~ 2951628 (-) True G154445
TU228728 other downstream 482496 2942238 ~ 2951628 (-) False G154445
TU228726 other downstream 491555 2925529 ~ 2942569 (-) False G154445
XR_006247842.1 other downstream 635591 2787296 ~ 2798533 (-) True LOC122328849
XR_006247897.1 other upstream 449443 3894966 ~ 3905892 (-) False lad1
XR_006247892.1 other upstream 728391 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 728391 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 1386295 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 2008894 5454417 ~ 5455047 (-) True G155227

Expression Profile